Clone Sequence Records
BS13292.complete Sequence
1859 bp assembled on 2009-12-07
GenBank Submission: KX801229
> BS13292.complete
GAAGTTATCAGTCGACATGGAGAATGAAACCGAAGCTCTTGATCCGGAAG
TTTATGCCGATGAGACCTCTACAGATGATAGCTCTGGTGATGATGAGGTA
ATCCTCAATCCAGTTGAAGGTCTGCAGCCGGCGGTTGAGATTGATGAACA
ACGTGACCAGCCTGGTGAGAACGCGGAACCCGAGCAACCGAGAGTTCCGC
CTTTAATTCTGGTAGATCCTCCGCATTTGCCCAGTCCCCCGAGAAATTCC
CGCCGCAATCAAGGCGAAGAGCAGGAGGTGATCTCATTAGAAACGCCATC
ACCGCCCAAGAAACGTAAACGTCTCTCCGCTGCTGCCGATAAAAGCCTTA
AAAAGTCGCCCGAGGGCAAACCAATAGTTGTAGATGACGAGGACGATGGC
ATGACCTGTCCCATTTGTCTGGATTCCTGGGAGATGAGTGGCGAGCATCG
ACTGGTCTCGCTGCGATGTGGTCACCTCTTTGGGGAAAGCTGCATTCGGC
GGTGGTTAAACGAAAGCCATCGCCAATCTTCTGTGAAGGTGTGCCCGCAG
TGCAAGACGAAGGCCACATTTAGAGATATCCGTCATCTGTATGCGAAGCG
CATTCAGATGCTGGACACGGATATTAGGGAGCAGCTGGAGGCGGAGCGGC
GGCGTACACATACTCTAACAACAGAGCTGGCTACCGCGAAGCTGGCTAAC
ACACTCACCACTGAGAAGCTGATTCTCCTGCAGAAGGACTACGAACGGCT
TAAGGAGCTGGTGAGGGCAGGTGGTGGTCGGGGAGCCTTCGGAGGCGATG
CATCCGGCCAGAAGAGCATTCAACAACTAGCCACCTACCGATTGTACATG
GAGAAGAACTTCGAGATAACTCGAGATCCCGGCTGCCGTGTATTGCTCTA
TTCCGCCAAGCACTCCATGCTGGTGGCCTCGCAAAAGAGTGCCCAAAACC
TGTTCCCCGGCTACGGCGTACGCTTTATTGATCCACCTACCTTCAAGCCC
CTGCAATTCCTGCACACCTCGGCACTCCTAATCCGGGACATTGCTTTTAG
TGACTCACAGCACTTGCTCACTGTGGCCAGTCGGGAACTAAAGATCAAGA
TATTCGACATAAGAACACGGCTTTGCTCGTCTATGTTCACCGCTCATGAC
AAGATGCTGTGGTCTTGCGCCCTGGATCGCAACGAGCGCGAACACTTTCT
ATACGGCGGAGATCTGCGAGGTGGAGTTTATATCTACGACTTGCGGTTTC
CCGAGAACATTCTCTGCGAGTTCCAAGCCGAAGTGAACTTAAGTCCTGTG
ATACACATAGCTCCTGTGCAACCCAATAAGATTTTTACCAGCGGTGGCTT
CCTGGTCTGCCAACTTACGGCCCTTACATTCTACGAGTACGCTGCGGCCA
GTGATACGGCTGTGCCCACTCGGCTAAATGTGGAGGGACCCTTTCTGTCC
ATGCAATACGATGCCGTGCAGGACACGGTGCTCATATCGGCACGATCCAA
TCCGAATTTCCCCCAGTCTCGCTTCATACTTGGTCGAATGGACAAGATTG
ACGGAACGCCGGTGCTGAAGGTCAAGGCCACCATATATGGATCGAAGGCC
ACACCGGTTATGACGCGACCGACCCAACTGGCCGTCGAGGATAATACCTT
AGTGGTTGGCTATCTCCAGGATAGTAAGCAGCTGATGATGCATGATGTGC
GGCGGGAGGAGCGAGTGCAAACAATGCCGGTCAACGAGGTGATCTACGAC
ATCTGCCCTGTGGCTACCCAGGCCGGATCCTATTTGGCCGCCCTCACCGA
CAATAAGTGTAGAGTTTACAAAGTGAACAGTTCCATGCGATGAAAGCTTT
CTAGACCAT
BS13292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13025-RB | 1827 | CG13025-PB | 1..1827 | 17..1843 | 9135 | 100 | Plus |
| CG13025-RA | 1827 | CG13025-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13025-RB | 2227 | CG13025-RB | 256..2082 | 17..1843 | 9135 | 100 | Plus |
| CG13025-RA | 3145 | CG13025-RA | 256..2082 | 17..1843 | 9135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16778215..16779481 | 1283..17 | 6335 | 100 | Minus |
| 3L | 28110227 | 3L | 16777594..16778155 | 1843..1282 | 2810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:13:31 has no hits.
BS13292.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:07 Download gff for
BS13292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 235..2060 | 17..1842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:02 Download gff for
BS13292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 256..2081 | 17..1842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:30 Download gff for
BS13292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 235..2060 | 17..1842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:44 Download gff for
BS13292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 256..2081 | 17..1842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:44 Download gff for
BS13292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16777595..16778153 | 1284..1842 | 100 | <- | Minus |
| 3L | 16778215..16779481 | 17..1283 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:02 Download gff for
BS13292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16770695..16771253 | 1284..1842 | 100 | <- | Minus |
| arm_3L | 16771315..16772581 | 17..1283 | 100 | | Minus |
BS13292.3prime Sequence
728 bp (660 high quality bases) assembled on 2006-10-13
> BS13292.3prime
ATGGTCTAGAAAGCTTTCATCGCATGGAACTGTTCACTTTGTAAACTCTA
CACTTATTGTCGGTGAGGGCGGCCAAATAGGATCCGGCCTGGGTAGCCAC
AGGGCAGATGTCGTAGATCACCTCGTTGACCGGCATTGTTTGCACTCGCT
CCTCCCGCCGCACATCATGCATCATCAGCTGCTTACTATCCTGGAGATAG
CCAACCACTAAGGTATTATCCTCGACGGCCAGTTGGGTCGGTCGCGTCAT
AACCGGTGTGGCCTTCGATCCATATATGGTGGCCTTGACCTTCAGCACCG
GCGTTCCGTCAATCTTGTCCATTCGACCAAGTATGAAGCGAGACTGGGGG
AAATTCGGATTGGATCGTGCCGATATGAGCACCGTGTCCTGCACGGCATC
GTATTGCATGGACAGAAAGGGTCCCTCCACATTTAGCCGAGTGGGCACAG
CCGTATCACTGGCCGCAGCGTACTCGTAGAATGTAAGGGCCGTAAGTTGG
CAGACCAGGAAGCCACCGCTGGTAAAAATCTTATTGGGTTGCACAGGAGC
TATGTGTATCACAGGACTTAAGTTCACTTCGGCTTGGAACTCGCAGAGAA
TGTTCTCGGGAAACCGCAAGTCGTAGATATAAACTCCACCTCGCAGATCT
CCGCCGTATAGAAAGTGTTCGCGCTCGTTGCGATCCAGGGCGCAAGACCA
CAGCATCTTGTCATGAGCGGTGAACATA
BS13292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13025-PA | 1827 | CG13025-RA | 1116..1827 | 728..17 | 3560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13025-RB | 2227 | CG13025-RB | 1371..2082 | 728..17 | 3560 | 100 | Minus |
| CG13025-RA | 3145 | CG13025-RA | 1371..2082 | 728..17 | 3560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16777594..16778155 | 17..578 | 2810 | 100 | Plus |
| 3L | 28110227 | 3L | 16778215..16778366 | 577..728 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:52:08 has no hits.
BS13292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:27 Download gff for
BS13292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-PA | 1117..1827 | 17..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:33 Download gff for
BS13292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 1372..2082 | 17..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:27 Download gff for
BS13292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 1372..2082 | 17..727 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:27 Download gff for
BS13292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16777594..16778153 | 17..576 | 100 | <- | Plus |
| 3L | 16778215..16778365 | 577..727 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:33 Download gff for
BS13292.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16770694..16771253 | 17..576 | 100 | <- | Plus |
| arm_3L | 16771315..16771465 | 577..727 | 100 | | Plus |
BS13292.5prime Sequence
668 bp (667 high quality bases) assembled on 2006-10-13
> BS13292.5prime
GAAGTTATCAGTCGACATGGAGAATGAAACCGAAGCTCTTGATCCGGAAG
TTTATGCCGATGAGACCTCTACAGATGATAGCTCTGGTGATGATGAGGTA
ATCCTCAATCCAGTTGAAGGTCTGCAGCCGGCGGTTGAGATTGATGAACA
ACGTGACCAGCCTGGTGAGAACGCGGAACCCGAGCAACCGAGAGTTCCGC
CTTTAATTCTGGTAGATCCTCCGCATTTGCCCAGTCCCCCGAGAAATTCC
CGCCGCAATCAAGGCGAAGAGCAGGAGGTGATCTCATTAGAAACGCCATC
ACCGCCCAAGAAACGTAAACGTCTCTCCGCTGCTGCCGATAAAAGCCTTA
AAAAGTCGCCCGAGGGCAAACCAATAGTTGTAGATGACGAGGACGATGGC
ATGACCTGTCCCATTTGTCTGGATTCCTGGGAGATGAGTGGCGAGCATCG
ACTGGTCTCGCTGCGATGTGGTCACCTCTTTGGGGAAAGCTGCATTCGGC
GGTGGTTAAACGAAAGCCATCGCCAATCTTCTGTGAAGGTGTGCCCGCAG
TGCAAGACGAAGGCCACATTTAGAGATATCCGTCATCTGTATGCGAAGCG
CATTCAGATGCTGGACACGGATATTAGGGAGCAGCTGGAGGCGGAGCGGC
GGCGTACACATACTCTAA
BS13292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13025-PA | 1827 | CG13025-RA | 1..652 | 17..668 | 3260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13025-RB | 2227 | CG13025-RB | 256..907 | 17..668 | 3260 | 100 | Plus |
| CG13025-RA | 3145 | CG13025-RA | 256..907 | 17..668 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16778830..16779481 | 668..17 | 3260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:17:38 has no hits.
BS13292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:27 Download gff for
BS13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-PA | 1..650 | 17..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:24 Download gff for
BS13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 252..907 | 10..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:28 Download gff for
BS13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13025-RA | 252..907 | 10..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:28 Download gff for
BS13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16778830..16779485 | 10..668 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:24 Download gff for
BS13292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16771930..16772585 | 10..668 | 99 | | Minus |
BS13292.pep Sequence
Translation from 16 to 1842
> BS13292.pep
MENETEALDPEVYADETSTDDSSGDDEVILNPVEGLQPAVEIDEQRDQPG
ENAEPEQPRVPPLILVDPPHLPSPPRNSRRNQGEEQEVISLETPSPPKKR
KRLSAAADKSLKKSPEGKPIVVDDEDDGMTCPICLDSWEMSGEHRLVSLR
CGHLFGESCIRRWLNESHRQSSVKVCPQCKTKATFRDIRHLYAKRIQMLD
TDIREQLEAERRRTHTLTTELATAKLANTLTTEKLILLQKDYERLKELVR
AGGGRGAFGGDASGQKSIQQLATYRLYMEKNFEITRDPGCRVLLYSAKHS
MLVASQKSAQNLFPGYGVRFIDPPTFKPLQFLHTSALLIRDIAFSDSQHL
LTVASRELKIKIFDIRTRLCSSMFTAHDKMLWSCALDRNEREHFLYGGDL
RGGVYIYDLRFPENILCEFQAEVNLSPVIHIAPVQPNKIFTSGGFLVCQL
TALTFYEYAAASDTAVPTRLNVEGPFLSMQYDAVQDTVLISARSNPNFPQ
SRFILGRMDKIDGTPVLKVKATIYGSKATPVMTRPTQLAVEDNTLVVGYL
QDSKQLMMHDVRREERVQTMPVNEVIYDICPVATQAGSYLAALTDNKCRV
YKVNSSMR*
BS13292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13025-PB | 608 | CG13025-PB | 1..608 | 1..608 | 3158 | 100 | Plus |
| CG13025-PA | 608 | CG13025-PA | 1..608 | 1..608 | 3158 | 100 | Plus |
| CG13481-PC | 176 | CG13481-PC | 95..174 | 111..196 | 199 | 41.9 | Plus |
| CG13481-PB | 176 | CG13481-PB | 95..174 | 111..196 | 199 | 41.9 | Plus |
| CG17329-PA | 162 | CG17329-PA | 96..156 | 127..193 | 163 | 46.3 | Plus |
