Clone BS13294 Report

Search the DGRC for BS13294

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG4753-RA
Protein status:BS13294.pep: full length peptide match
Sequenced Size:1175

Clone Sequence Records

BS13294.complete Sequence

1175 bp assembled on 2009-12-07

GenBank Submission: KX800724

> BS13294.complete
GAAGTTATCAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGA
TCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTC
CTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCT
GGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGG
AATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAG
CAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTA
CGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATC
TGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTC
CTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTT
CGAGAAGGACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGTCTTCTCCT
ATCCGGATCCCGTGTGGCTACTGCTGAACGCGGAGGGCACCCGTTTCACA
CCCGCCAAACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGAGGTCTTCC
CCTCCTCAAGCACCATCTGATTCCGCGCACTAAGGGATTCACGACCAGTC
TGCCCACCATGCGTGGCATCTGTCCTGCCATCTACGACATCAATCTGGCC
TTCAAGAAGAATGCCGAGCCAAAGCCCACCATGCTGTCCCAGTTGAACGG
AGAGCCCGTGGAACCGTACATGTACATTCGCCGAGTGCCACTGGACGTGG
TTCCCGATGACGAGAAGGAGGCCGCCGCCTGGATGCAGGACTTCTTTGCG
GAAAAGGACAAGATCATCGACAGCTTCCACGAGACCGGCAGCTTCTTTAA
GAATTCCGGAGTCAAGGAGGTGCCCGAGAAAATCTACAAGCCGCGCCTGA
GCACGCTCCTCAACTTCTTGGGCTGGGCCACCTTTGCCGTCCTGTGCATT
CTGCACTACTTGGTCACCTCGCTGGTTGCCGGCAACTGGTTTGGCTTCAT
CACGGTTCTTTCCATTTTGGGAGGATTCTATAGCCTCATGGAATACGCTG
TGAATGCTTCGAAGATCAGCAAAGCCTCTGCGTATGGAGCAGCTGCTGCC
AAGAAATAGAAGCTTTCTAGACCAT

BS13294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1143 CG4753-PC 1..1143 17..1159 5715 100 Plus
CG4753-RA 1143 CG4753-PA 1..1143 17..1159 5715 100 Plus
CG4753-RB 1143 CG4753-PB 1..1143 17..1159 5715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1575 CG4753-RC 280..1423 17..1160 5720 100 Plus
CG4753-RA 1355 CG4753-RA 60..1203 17..1160 5720 100 Plus
CG4753-RB 1570 CG4753-RB 275..1418 17..1160 5720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16379700..16380235 718..183 2680 100 Minus
3L 28110227 3L 16379270..16379629 1076..717 1800 100 Minus
3L 28110227 3L 16380471..16380636 182..17 830 100 Minus
3L 28110227 3L 16383353..16383787 696..262 540 74.9 Minus
3L 28110227 3L 16379126..16379209 1160..1077 420 100 Minus
3L 28110227 3L 16382537..16382670 921..788 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-28 01:37:45 has no hits.

BS13294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:42 Download gff for BS13294.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 1..1143 17..1159 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:59 Download gff for BS13294.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 55..1191 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:09 Download gff for BS13294.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 275..1411 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:15 Download gff for BS13294.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 55..1191 17..1153 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:07 Download gff for BS13294.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 275..1411 17..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:07 Download gff for BS13294.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16379270..16379627 719..1076 100 <- Minus
3L 16380471..16380636 17..182 100   Minus
3L 16379133..16379209 1077..1153 100 <- Minus
3L 16379700..16380235 183..718 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:09 Download gff for BS13294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16372233..16372309 1077..1153 100 <- Minus
arm_3L 16372370..16372727 719..1076 100 <- Minus
arm_3L 16372800..16373335 183..718 100 <- Minus
arm_3L 16373571..16373736 17..182 100   Minus

BS13294.3prime Sequence

556 bp (496 high quality bases) assembled on 2006-10-13

> BS13294.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGGCAGCAGCTGCTCCATACGCAGAG
GCTTTGCTGATCTTCGAAGCATTCACAGCGTATTCCATGAGGCTATAGAA
TCCTCCCAAAATGGAAAGAACCGTGATGAAGCCAAACCAGTTGCCGGCAA
CCAGCGAGGTGACCAAGTAGTGCAGAATGCACAGGACGGCAAAGGTGGCC
CAGCCCAAGAAGTTGAGGAGCGTGCTCAGGCGCGGCTTGTAGATTTTCTC
GGGCACCTCCTTGACTCCGGAATTCTTAAAGAAGCTGCCGGTCTCGTGGA
AGCTGTCGATGATCTTGTCCTTTTCCGCAAAGAAGTCCTGCATCCAGGCG
GCGGCCTCCTTCTCGTCATCGGGAACCACGTCCAGTGGCACTCGGCGAAT
GTACATGTACGGTTCCACGGGCTCTCCGTTCAACTGGGACAGCATGGTGG
GCTTTGGCTCGGCATTCTTCTTGAAGGCCAGATTGATGTCGTAGATGGCA
GGACAGATGCCACGCATGGTGGGCAGACTGGTCGTGAATCCCTTAGTGCG
CGGAAT

BS13294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-PB 1143 CG4753-RB 604..1143 556..17 2700 100 Minus
CG4753-PA 1143 CG4753-RA 604..1143 556..17 2700 100 Minus
CG4729-PD 432 CG4729-RD 124..172 322..274 145 91.8 Minus
CG4729-PA 1161 CG4729-RA 853..901 322..274 145 91.8 Minus
CG4729-PC 1161 CG4729-RC 853..901 322..274 145 91.8 Minus
CG4729-PB 1161 CG4729-RB 853..901 322..274 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1575 CG4753-RC 883..1423 556..16 2705 100 Minus
CG4753-RA 1355 CG4753-RA 663..1203 556..16 2705 100 Minus
CG4753-RB 1570 CG4753-RB 878..1418 556..16 2705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16379270..16379629 100..459 1800 100 Plus
3L 28110227 3L 16379700..16379798 458..556 495 100 Plus
3L 28110227 3L 16379126..16379209 16..99 420 100 Plus
3L 28110227 3L 16382537..16382670 255..388 325 82.8 Plus
Blast to na_te.dros performed on 2015-02-10 18:22:18 has no hits.

BS13294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:28 Download gff for BS13294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-PA 604..1143 17..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:27 Download gff for BS13294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 878..1428 3..556 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:10 Download gff for BS13294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 878..1428 3..556 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:10 Download gff for BS13294.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16379116..16379209 3..99 94 <- Plus
3L 16379270..16379627 100..457 100 <- Plus
3L 16379700..16379798 458..556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:27 Download gff for BS13294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16372216..16372309 3..99 94 <- Plus
arm_3L 16372370..16372727 100..457 100 <- Plus
arm_3L 16372800..16372898 458..556 100   Plus

BS13294.5prime Sequence

482 bp (469 high quality bases) assembled on 2006-10-13

> BS13294.5prime
GAAGTTATCAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGA
TCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTC
CTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCT
GGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGG
AATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAG
CAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTA
CGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATC
TGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTC
CTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTT
CGAGAAGGACAAGGTGGTGATCAAGACGCAGC

BS13294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-PB 1143 CG4753-RB 1..466 17..482 2330 100 Plus
CG4753-PA 1143 CG4753-RA 1..466 17..482 2330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1575 CG4753-RC 280..745 17..482 2330 100 Plus
CG4753-RA 1355 CG4753-RA 60..525 17..482 2330 100 Plus
CG4753-RB 1570 CG4753-RB 275..740 17..482 2330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16379936..16380235 482..183 1500 100 Minus
3L 28110227 3L 16380471..16380636 182..17 830 100 Minus
3L 28110227 3L 16383586..16383787 463..262 260 75.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:49:28 has no hits.

BS13294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:29 Download gff for BS13294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-PA 1..466 17..482 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:25 Download gff for BS13294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 271..740 9..482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:16 Download gff for BS13294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 271..740 9..482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:16 Download gff for BS13294.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16380471..16380636 17..182 100   Minus
3L 16379936..16380235 183..482 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:25 Download gff for BS13294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16373036..16373335 183..482 100 <- Minus
arm_3L 16373571..16373736 17..182 100   Minus

BS13294.pep Sequence

Translation from 16 to 1158

> BS13294.pep
MSHLRGLGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLH
YSFYCILVCVAEWYAGSKLRVYIDPQDEQKFFGKEHGLLLMNHTYEIDWL
TAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWWMAEFIFLDRNFEKDKV
VIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKHH
LIPRTKGFTTSLPTMRGICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEP
YMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVK
EVPEKIYKPRLSTLLNFLGWATFAVLCILHYLVTSLVAGNWFGFITVLSI
LGGFYSLMEYAVNASKISKASAYGAAAAKK*

BS13294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-PC 380 CG4753-PC 1..380 1..380 2014 100 Plus
CG4753-PA 380 CG4753-PA 1..380 1..380 2014 100 Plus
CG4753-PB 380 CG4753-PB 1..380 1..380 2014 100 Plus
CG4729-PB 386 CG4729-PB 15..381 10..376 1268 62.7 Plus
CG4729-PC 386 CG4729-PC 15..381 10..376 1268 62.7 Plus