Clone Sequence Records
BS13294.complete Sequence
1175 bp assembled on 2009-12-07
GenBank Submission: KX800724
> BS13294.complete
GAAGTTATCAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGA
TCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTC
CTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCT
GGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGG
AATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAG
CAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTA
CGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATC
TGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTC
CTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTT
CGAGAAGGACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGTCTTCTCCT
ATCCGGATCCCGTGTGGCTACTGCTGAACGCGGAGGGCACCCGTTTCACA
CCCGCCAAACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGAGGTCTTCC
CCTCCTCAAGCACCATCTGATTCCGCGCACTAAGGGATTCACGACCAGTC
TGCCCACCATGCGTGGCATCTGTCCTGCCATCTACGACATCAATCTGGCC
TTCAAGAAGAATGCCGAGCCAAAGCCCACCATGCTGTCCCAGTTGAACGG
AGAGCCCGTGGAACCGTACATGTACATTCGCCGAGTGCCACTGGACGTGG
TTCCCGATGACGAGAAGGAGGCCGCCGCCTGGATGCAGGACTTCTTTGCG
GAAAAGGACAAGATCATCGACAGCTTCCACGAGACCGGCAGCTTCTTTAA
GAATTCCGGAGTCAAGGAGGTGCCCGAGAAAATCTACAAGCCGCGCCTGA
GCACGCTCCTCAACTTCTTGGGCTGGGCCACCTTTGCCGTCCTGTGCATT
CTGCACTACTTGGTCACCTCGCTGGTTGCCGGCAACTGGTTTGGCTTCAT
CACGGTTCTTTCCATTTTGGGAGGATTCTATAGCCTCATGGAATACGCTG
TGAATGCTTCGAAGATCAGCAAAGCCTCTGCGTATGGAGCAGCTGCTGCC
AAGAAATAGAAGCTTTCTAGACCAT
BS13294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4753-RC | 1143 | CG4753-PC | 1..1143 | 17..1159 | 5715 | 100 | Plus |
CG4753-RA | 1143 | CG4753-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
CG4753-RB | 1143 | CG4753-PB | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4753-RC | 1575 | CG4753-RC | 280..1423 | 17..1160 | 5720 | 100 | Plus |
CG4753-RA | 1355 | CG4753-RA | 60..1203 | 17..1160 | 5720 | 100 | Plus |
CG4753-RB | 1570 | CG4753-RB | 275..1418 | 17..1160 | 5720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16379700..16380235 | 718..183 | 2680 | 100 | Minus |
3L | 28110227 | 3L | 16379270..16379629 | 1076..717 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 16380471..16380636 | 182..17 | 830 | 100 | Minus |
3L | 28110227 | 3L | 16383353..16383787 | 696..262 | 540 | 74.9 | Minus |
3L | 28110227 | 3L | 16379126..16379209 | 1160..1077 | 420 | 100 | Minus |
3L | 28110227 | 3L | 16382537..16382670 | 921..788 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:37:45 has no hits.
BS13294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:42 Download gff for
BS13294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RA | 1..1143 | 17..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:59 Download gff for
BS13294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RA | 55..1191 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:09 Download gff for
BS13294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RB | 275..1411 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:15 Download gff for
BS13294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RA | 55..1191 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:07 Download gff for
BS13294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RB | 275..1411 | 17..1153 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:07 Download gff for
BS13294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16379270..16379627 | 719..1076 | 100 | <- | Minus |
3L | 16380471..16380636 | 17..182 | 100 | | Minus |
3L | 16379133..16379209 | 1077..1153 | 100 | <- | Minus |
3L | 16379700..16380235 | 183..718 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:09 Download gff for
BS13294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16372233..16372309 | 1077..1153 | 100 | <- | Minus |
arm_3L | 16372370..16372727 | 719..1076 | 100 | <- | Minus |
arm_3L | 16372800..16373335 | 183..718 | 100 | <- | Minus |
arm_3L | 16373571..16373736 | 17..182 | 100 | | Minus |
BS13294.3prime Sequence
556 bp (496 high quality bases) assembled on 2006-10-13
> BS13294.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGGCAGCAGCTGCTCCATACGCAGAG
GCTTTGCTGATCTTCGAAGCATTCACAGCGTATTCCATGAGGCTATAGAA
TCCTCCCAAAATGGAAAGAACCGTGATGAAGCCAAACCAGTTGCCGGCAA
CCAGCGAGGTGACCAAGTAGTGCAGAATGCACAGGACGGCAAAGGTGGCC
CAGCCCAAGAAGTTGAGGAGCGTGCTCAGGCGCGGCTTGTAGATTTTCTC
GGGCACCTCCTTGACTCCGGAATTCTTAAAGAAGCTGCCGGTCTCGTGGA
AGCTGTCGATGATCTTGTCCTTTTCCGCAAAGAAGTCCTGCATCCAGGCG
GCGGCCTCCTTCTCGTCATCGGGAACCACGTCCAGTGGCACTCGGCGAAT
GTACATGTACGGTTCCACGGGCTCTCCGTTCAACTGGGACAGCATGGTGG
GCTTTGGCTCGGCATTCTTCTTGAAGGCCAGATTGATGTCGTAGATGGCA
GGACAGATGCCACGCATGGTGGGCAGACTGGTCGTGAATCCCTTAGTGCG
CGGAAT
BS13294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4753-PB | 1143 | CG4753-RB | 604..1143 | 556..17 | 2700 | 100 | Minus |
CG4753-PA | 1143 | CG4753-RA | 604..1143 | 556..17 | 2700 | 100 | Minus |
CG4729-PD | 432 | CG4729-RD | 124..172 | 322..274 | 145 | 91.8 | Minus |
CG4729-PA | 1161 | CG4729-RA | 853..901 | 322..274 | 145 | 91.8 | Minus |
CG4729-PC | 1161 | CG4729-RC | 853..901 | 322..274 | 145 | 91.8 | Minus |
CG4729-PB | 1161 | CG4729-RB | 853..901 | 322..274 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4753-RC | 1575 | CG4753-RC | 883..1423 | 556..16 | 2705 | 100 | Minus |
CG4753-RA | 1355 | CG4753-RA | 663..1203 | 556..16 | 2705 | 100 | Minus |
CG4753-RB | 1570 | CG4753-RB | 878..1418 | 556..16 | 2705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16379270..16379629 | 100..459 | 1800 | 100 | Plus |
3L | 28110227 | 3L | 16379700..16379798 | 458..556 | 495 | 100 | Plus |
3L | 28110227 | 3L | 16379126..16379209 | 16..99 | 420 | 100 | Plus |
3L | 28110227 | 3L | 16382537..16382670 | 255..388 | 325 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:22:18 has no hits.
BS13294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:28 Download gff for
BS13294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-PA | 604..1143 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:27 Download gff for
BS13294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RB | 878..1428 | 3..556 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:10 Download gff for
BS13294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RB | 878..1428 | 3..556 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:10 Download gff for
BS13294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16379116..16379209 | 3..99 | 94 | <- | Plus |
3L | 16379270..16379627 | 100..457 | 100 | <- | Plus |
3L | 16379700..16379798 | 458..556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:27 Download gff for
BS13294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16372216..16372309 | 3..99 | 94 | <- | Plus |
arm_3L | 16372370..16372727 | 100..457 | 100 | <- | Plus |
arm_3L | 16372800..16372898 | 458..556 | 100 | | Plus |
BS13294.5prime Sequence
482 bp (469 high quality bases) assembled on 2006-10-13
> BS13294.5prime
GAAGTTATCAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGA
TCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTC
CTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCT
GGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGG
AATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAG
CAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTA
CGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATC
TGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTC
CTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTT
CGAGAAGGACAAGGTGGTGATCAAGACGCAGC
BS13294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4753-PB | 1143 | CG4753-RB | 1..466 | 17..482 | 2330 | 100 | Plus |
CG4753-PA | 1143 | CG4753-RA | 1..466 | 17..482 | 2330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4753-RC | 1575 | CG4753-RC | 280..745 | 17..482 | 2330 | 100 | Plus |
CG4753-RA | 1355 | CG4753-RA | 60..525 | 17..482 | 2330 | 100 | Plus |
CG4753-RB | 1570 | CG4753-RB | 275..740 | 17..482 | 2330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16379936..16380235 | 482..183 | 1500 | 100 | Minus |
3L | 28110227 | 3L | 16380471..16380636 | 182..17 | 830 | 100 | Minus |
3L | 28110227 | 3L | 16383586..16383787 | 463..262 | 260 | 75.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:49:28 has no hits.
BS13294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:29 Download gff for
BS13294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-PA | 1..466 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:25 Download gff for
BS13294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RB | 271..740 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:16 Download gff for
BS13294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4753-RB | 271..740 | 9..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:16 Download gff for
BS13294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16380471..16380636 | 17..182 | 100 | | Minus |
3L | 16379936..16380235 | 183..482 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:25 Download gff for
BS13294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16373036..16373335 | 183..482 | 100 | <- | Minus |
arm_3L | 16373571..16373736 | 17..182 | 100 | | Minus |
BS13294.pep Sequence
Translation from 16 to 1158
> BS13294.pep
MSHLRGLGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLH
YSFYCILVCVAEWYAGSKLRVYIDPQDEQKFFGKEHGLLLMNHTYEIDWL
TAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWWMAEFIFLDRNFEKDKV
VIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKHH
LIPRTKGFTTSLPTMRGICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEP
YMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVK
EVPEKIYKPRLSTLLNFLGWATFAVLCILHYLVTSLVAGNWFGFITVLSI
LGGFYSLMEYAVNASKISKASAYGAAAAKK*
BS13294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4753-PC | 380 | CG4753-PC | 1..380 | 1..380 | 2014 | 100 | Plus |
CG4753-PA | 380 | CG4753-PA | 1..380 | 1..380 | 2014 | 100 | Plus |
CG4753-PB | 380 | CG4753-PB | 1..380 | 1..380 | 2014 | 100 | Plus |
CG4729-PB | 386 | CG4729-PB | 15..381 | 10..376 | 1268 | 62.7 | Plus |
CG4729-PC | 386 | CG4729-PC | 15..381 | 10..376 | 1268 | 62.7 | Plus |