Clone Sequence Records
BS13295.3prime Sequence
477 bp (477 high quality bases) assembled on 2006-10-13
> BS13295.3prime
ATGGTCTAGAAAGCTTCTAATGCCTGAGCATGCTGGCCAGTGCCAGACTG
ACGACAGATCCAACCAGACTGTAGCCCAACTGGCGGACACCCAGCAGGGA
GCTGGCTCCATTGCATCCCTCGTCGGGACAGGTGCAAATGATCTGCTTGT
AGCCCTCGTTGTCGGCGGTGAAGCAAGCGTTTTGGATCTTCTCCGGAATG
AAACCACAGCTTCTCTCGATTCTGCGCTCGTCGTTCTGCTCGAAATTGAT
CACCGTCTTGCGGCAGAAGGCCACCTCACCGCTGGGCGGGACGCAGTCCG
TCAGGTACTGGTTGTCCCTCTGGGCACGAGGAGTGTTCACCACCAGGCCA
CCGCAATCCTCGTTGTCATGCGAATTACACTGATGGCACCGAATGGCATT
CACTGTTAACAAATTGGCGGCCAAAACAAGGCACATGGCATAGACGTAGG
TTGTGATTGCCATGTCGACTGATAACT
BS13295.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14275-PA | 447 | CG14275-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
CG14275-PB | 447 | CG14275-RB | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14275-RB | 848 | CG14275-RB | 184..630 | 463..17 | 2235 | 100 | Minus |
CG14275-RA | 849 | CG14275-RA | 185..631 | 463..17 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8332305..8332693 | 405..17 | 1945 | 100 | Minus |
2L | 23513712 | 2L | 8329704..8329764 | 463..403 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:40:57 has no hits.
BS13295.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:29 Download gff for
BS13295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-PB | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:01 Download gff for
BS13295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 179..631 | 17..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:08 Download gff for
BS13295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 179..631 | 17..471 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:08 Download gff for
BS13295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8329698..8329764 | 403..471 | 94 | -> | Minus |
2L | 8332308..8332693 | 17..402 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:01 Download gff for
BS13295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8329698..8329764 | 403..471 | 94 | -> | Minus |
arm_2L | 8332308..8332693 | 17..402 | 100 | | Minus |
BS13295.5prime Sequence
477 bp (477 high quality bases) assembled on 2006-10-13
> BS13295.5prime
GAAGTTATCACTCGACATGGCAATCACAACCTACGTCTATGCCATGTGCC
TTGTTTTGGCCGCCAATTTGTTAACAGTGAATGCCATTCGGTGCCATCAG
TGTAATTCGCATGACAACGAGGATTGCGGTGGCCTGGTGGTGAACACTCC
TCGTGCCCAGAGGGACAACCAGTACCTGACGGACTGCGTCCCGCCCAGCG
GTGAGGTGGCCTTCTGCCGCAAGACGGTGATCAATTTCGAGCAGAACGAC
GAGCGCAGAATCGAGAGAAGCTGTGGTTTCATTCCGGAGAAGATCCAAAA
CGCTTGCTTCACCGCCGACAACGAGGGCTACAAGCAGATCATTTGCACCT
GTCCCGACGAGGGATGCAATGGAGCCAGCTCCCTGCTGGGTGTCCGCCAG
TTGGGCTACAGTCTGGTTGGATCTGTCGTCAGTCTGGCACTGGCCAGCAT
GCTCAGGCATTAGAAGCTTTCTAGACC
BS13295.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14275-PA | 447 | CG14275-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
CG14275-PB | 447 | CG14275-RB | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14275-RB | 848 | CG14275-RB | 184..630 | 17..463 | 2235 | 100 | Plus |
CG14275-RA | 849 | CG14275-RA | 185..631 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8332305..8332693 | 75..463 | 1945 | 100 | Plus |
2L | 23513712 | 2L | 8329704..8329764 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:54:50 has no hits.
BS13295.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:30 Download gff for
BS13295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-PB | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:04 Download gff for
BS13295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 185..631 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:04 Download gff for
BS13295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 185..631 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:04 Download gff for
BS13295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8329704..8329764 | 17..77 | 100 | -> | Plus |
2L | 8332308..8332693 | 78..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:04 Download gff for
BS13295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8329704..8329764 | 17..77 | 100 | -> | Plus |
arm_2L | 8332308..8332693 | 78..463 | 100 | | Plus |
BS13295.complete Sequence
479 bp assembled on 2006-11-01
GenBank Submission: FJ637419
> BS13295.complete
GAAGTTATCAGTCGACATGGCAATCACAACCTACGTCTATGCCATGTGCC
TTGTTTTGGCCGCCAATTTGTTAACAGTGAATGCCATTCGGTGCCATCAG
TGTAATTCGCATGACAACGAGGATTGCGGTGGCCTGGTGGTGAACACTCC
TCGTGCCCAGAGGGACAACCAGTACCTGACGGACTGCGTCCCGCCCAGCG
GTGAGGTGGCCTTCTGCCGCAAGACGGTGATCAATTTCGAGCAGAACGAC
GAGCGCAGAATCGAGAGAAGCTGTGGTTTCATTCCGGAGAAGATCCAAAA
CGCTTGCTTCACCGCCGACAACGAGGGCTACAAGCAGATCATTTGCACCT
GTCCCGACGAGGGATGCAATGGAGCCAGCTCCCTGCTGGGTGTCCGCCAG
TTGGGCTACAGTCTGGTTGGATCTGTCGTCAGTCTGGCACTGGCCAGCAT
GCTCAGGCATTAGAAGCTTTCTAGACCAT
BS13295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14275-RB | 447 | CG14275-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
CG14275-RA | 447 | CG14275-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14275-RB | 848 | CG14275-RB | 184..630 | 17..463 | 2235 | 100 | Plus |
CG14275-RA | 849 | CG14275-RA | 185..631 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8332305..8332693 | 75..463 | 1945 | 100 | Plus |
2L | 23513712 | 2L | 8329704..8329764 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:43:56 has no hits.
BS13295.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:31 Download gff for
BS13295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RB | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:14 Download gff for
BS13295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 177..629 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:35 Download gff for
BS13295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 185..631 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:31 Download gff for
BS13295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 177..629 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:36 Download gff for
BS13295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14275-RA | 185..631 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:36 Download gff for
BS13295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8329704..8329764 | 17..77 | 100 | -> | Plus |
2L | 8332308..8332693 | 78..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:35 Download gff for
BS13295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8329704..8329764 | 17..77 | 100 | -> | Plus |
arm_2L | 8332308..8332693 | 78..463 | 100 | | Plus |
BS13295.pep Sequence
Translation from 16 to 462
> BS13295.pep
MAITTYVYAMCLVLAANLLTVNAIRCHQCNSHDNEDCGGLVVNTPRAQRD
NQYLTDCVPPSGEVAFCRKTVINFEQNDERRIERSCGFIPEKIQNACFTA
DNEGYKQIICTCPDEGCNGASSLLGVRQLGYSLVGSVVSLALASMLRH*
BS13295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14275-PB | 148 | CG14275-PB | 1..148 | 1..148 | 791 | 100 | Plus |
CG14275-PA | 148 | CG14275-PA | 1..148 | 1..148 | 791 | 100 | Plus |
CG7781-PB | 147 | CG7781-PB | 3..141 | 6..144 | 147 | 29.5 | Plus |
CG7781-PA | 147 | CG7781-PA | 3..141 | 6..144 | 147 | 29.5 | Plus |