Clone BS13295 Report

Search the DGRC for BS13295

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG14275-RA
Protein status:BS13295.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13295.3prime Sequence

477 bp (477 high quality bases) assembled on 2006-10-13

> BS13295.3prime
ATGGTCTAGAAAGCTTCTAATGCCTGAGCATGCTGGCCAGTGCCAGACTG
ACGACAGATCCAACCAGACTGTAGCCCAACTGGCGGACACCCAGCAGGGA
GCTGGCTCCATTGCATCCCTCGTCGGGACAGGTGCAAATGATCTGCTTGT
AGCCCTCGTTGTCGGCGGTGAAGCAAGCGTTTTGGATCTTCTCCGGAATG
AAACCACAGCTTCTCTCGATTCTGCGCTCGTCGTTCTGCTCGAAATTGAT
CACCGTCTTGCGGCAGAAGGCCACCTCACCGCTGGGCGGGACGCAGTCCG
TCAGGTACTGGTTGTCCCTCTGGGCACGAGGAGTGTTCACCACCAGGCCA
CCGCAATCCTCGTTGTCATGCGAATTACACTGATGGCACCGAATGGCATT
CACTGTTAACAAATTGGCGGCCAAAACAAGGCACATGGCATAGACGTAGG
TTGTGATTGCCATGTCGACTGATAACT

BS13295.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-PA 447 CG14275-RA 1..447 463..17 2235 100 Minus
CG14275-PB 447 CG14275-RB 1..447 463..17 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 848 CG14275-RB 184..630 463..17 2235 100 Minus
CG14275-RA 849 CG14275-RA 185..631 463..17 2235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8332305..8332693 405..17 1945 100 Minus
2L 23513712 2L 8329704..8329764 463..403 305 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:40:57 has no hits.

BS13295.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:29 Download gff for BS13295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-PB 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:01 Download gff for BS13295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 179..631 17..471 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:08 Download gff for BS13295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 179..631 17..471 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:08 Download gff for BS13295.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8329698..8329764 403..471 94 -> Minus
2L 8332308..8332693 17..402 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:01 Download gff for BS13295.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8329698..8329764 403..471 94 -> Minus
arm_2L 8332308..8332693 17..402 100   Minus

BS13295.5prime Sequence

477 bp (477 high quality bases) assembled on 2006-10-13

> BS13295.5prime
GAAGTTATCACTCGACATGGCAATCACAACCTACGTCTATGCCATGTGCC
TTGTTTTGGCCGCCAATTTGTTAACAGTGAATGCCATTCGGTGCCATCAG
TGTAATTCGCATGACAACGAGGATTGCGGTGGCCTGGTGGTGAACACTCC
TCGTGCCCAGAGGGACAACCAGTACCTGACGGACTGCGTCCCGCCCAGCG
GTGAGGTGGCCTTCTGCCGCAAGACGGTGATCAATTTCGAGCAGAACGAC
GAGCGCAGAATCGAGAGAAGCTGTGGTTTCATTCCGGAGAAGATCCAAAA
CGCTTGCTTCACCGCCGACAACGAGGGCTACAAGCAGATCATTTGCACCT
GTCCCGACGAGGGATGCAATGGAGCCAGCTCCCTGCTGGGTGTCCGCCAG
TTGGGCTACAGTCTGGTTGGATCTGTCGTCAGTCTGGCACTGGCCAGCAT
GCTCAGGCATTAGAAGCTTTCTAGACC

BS13295.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-PA 447 CG14275-RA 1..447 17..463 2235 100 Plus
CG14275-PB 447 CG14275-RB 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 848 CG14275-RB 184..630 17..463 2235 100 Plus
CG14275-RA 849 CG14275-RA 185..631 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8332305..8332693 75..463 1945 100 Plus
2L 23513712 2L 8329704..8329764 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:54:50 has no hits.

BS13295.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:30 Download gff for BS13295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-PB 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:04 Download gff for BS13295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 185..631 17..463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:04 Download gff for BS13295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 185..631 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:04 Download gff for BS13295.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8329704..8329764 17..77 100 -> Plus
2L 8332308..8332693 78..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:04 Download gff for BS13295.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8329704..8329764 17..77 100 -> Plus
arm_2L 8332308..8332693 78..463 100   Plus

BS13295.complete Sequence

479 bp assembled on 2006-11-01

GenBank Submission: FJ637419

> BS13295.complete
GAAGTTATCAGTCGACATGGCAATCACAACCTACGTCTATGCCATGTGCC
TTGTTTTGGCCGCCAATTTGTTAACAGTGAATGCCATTCGGTGCCATCAG
TGTAATTCGCATGACAACGAGGATTGCGGTGGCCTGGTGGTGAACACTCC
TCGTGCCCAGAGGGACAACCAGTACCTGACGGACTGCGTCCCGCCCAGCG
GTGAGGTGGCCTTCTGCCGCAAGACGGTGATCAATTTCGAGCAGAACGAC
GAGCGCAGAATCGAGAGAAGCTGTGGTTTCATTCCGGAGAAGATCCAAAA
CGCTTGCTTCACCGCCGACAACGAGGGCTACAAGCAGATCATTTGCACCT
GTCCCGACGAGGGATGCAATGGAGCCAGCTCCCTGCTGGGTGTCCGCCAG
TTGGGCTACAGTCTGGTTGGATCTGTCGTCAGTCTGGCACTGGCCAGCAT
GCTCAGGCATTAGAAGCTTTCTAGACCAT

BS13295.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 447 CG14275-PB 1..447 17..463 2235 100 Plus
CG14275-RA 447 CG14275-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 848 CG14275-RB 184..630 17..463 2235 100 Plus
CG14275-RA 849 CG14275-RA 185..631 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8332305..8332693 75..463 1945 100 Plus
2L 23513712 2L 8329704..8329764 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:43:56 has no hits.

BS13295.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:31 Download gff for BS13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RB 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:14 Download gff for BS13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 177..629 9..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:35 Download gff for BS13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 185..631 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:31 Download gff for BS13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 177..629 9..463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:36 Download gff for BS13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 185..631 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:36 Download gff for BS13295.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8329704..8329764 17..77 100 -> Plus
2L 8332308..8332693 78..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:35 Download gff for BS13295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8329704..8329764 17..77 100 -> Plus
arm_2L 8332308..8332693 78..463 100   Plus

BS13295.pep Sequence

Translation from 16 to 462

> BS13295.pep
MAITTYVYAMCLVLAANLLTVNAIRCHQCNSHDNEDCGGLVVNTPRAQRD
NQYLTDCVPPSGEVAFCRKTVINFEQNDERRIERSCGFIPEKIQNACFTA
DNEGYKQIICTCPDEGCNGASSLLGVRQLGYSLVGSVVSLALASMLRH*

BS13295.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-PB 148 CG14275-PB 1..148 1..148 791 100 Plus
CG14275-PA 148 CG14275-PA 1..148 1..148 791 100 Plus
CG7781-PB 147 CG7781-PB 3..141 6..144 147 29.5 Plus
CG7781-PA 147 CG7781-PA 3..141 6..144 147 29.5 Plus