Clone Sequence Records
BS13309.3prime Sequence
598 bp (521 high quality bases) assembled on 2006-10-13
> BS13309.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAAGCAATGCCGGTGTGGTCACGGATC
CAGTCCAAGTGGTAGGTCACACGCTGGAAGCCAGCGGGGTGGCCAGCCTG
GCAACCGGCTCCCGACACCCAGTTGGTGACTCCCACAAGCTTGCTGCCGT
CATGGGTGACCAGAGGACCGCCGGAGTCGCCACCGCAGGTGCCCTTGCCA
TCGACCACGCGCACGCAGATGATGTTGTCGCCGACGGTGCCGGTTCCGTA
GTAGCTGGCGCACTCGGAGTTGTGGATGATCTGGAGATCGACACACTGCA
GGTAGTCGGGCAGTGGGCTGCCGTCATAGGTGCCTCCCCAGCCGCAGGCA
ACAGCCCACCATTCGTTGTAGTCGTTGTAGCGATCGTTGTAGCTGGGCAG
CTCCACCTTGTTCACCATGTGCCAGAAGTCCACGTGGGGAATGCGGATGA
GGGCGATGTCAGCAGATCCGTGAGTGATGAAGTTGCCGCTTCCAACCCAG
TGGGTGAACTGGGCGTTTGGTGCGCCAGGTTGCTCCGAAATAGACAGTCA
CTGCATCACCTCCGATGCAGTGCTCCGCGGTGAGGACCCCCTCGTTGG
BS13309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7118-PA | 783 | Jon66Ci-RA | 283..783 | 517..17 | 2480 | 99.8 | Minus |
CG7170-PA | 789 | Jon66Cii-RA | 358..552 | 454..260 | 975 | 100 | Minus |
CG8871-PA | 777 | Jon25Biii-RA | 340..534 | 463..269 | 525 | 90.7 | Minus |
CG7118-PA | 783 | Jon66Ci-RA | 203..284 | 598..517 | 335 | 96.3 | Minus |
CG8867-PA | 801 | Jon25Bi-RA | 367..453 | 460..374 | 285 | 93.1 | Minus |
CG8867-PB | 801 | Jon25Bi-RB | 367..453 | 460..374 | 285 | 93.1 | Minus |
CG7170-PA | 789 | Jon66Cii-RA | 718..789 | 88..17 | 210 | 91.6 | Minus |
CG7170-PA | 789 | Jon66Cii-RA | 615..685 | 191..121 | 205 | 91.5 | Minus |
CG18030-PA | 804 | Jon99Fi-RA | 397..456 | 436..377 | 200 | 93.3 | Minus |
CG8871-PA | 777 | Jon25Biii-RA | 712..767 | 85..30 | 180 | 92.8 | Minus |
CG2229-PA | 804 | Jon99Fii-RA | 397..456 | 436..377 | 175 | 91.6 | Minus |
CG8579-PA | 816 | Jon44E-RA | 424..462 | 412..374 | 170 | 97.4 | Minus |
CG6580-PA | 780 | Jon65Aii-RA | 340..378 | 460..422 | 145 | 94.8 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 415..456 | 436..395 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Ci-RA | 838 | CG7118-RA | 221..801 | 598..17 | 2825 | 99.1 | Minus |
Jon66Cii-RA | 830 | CG7170-RA | 224..792 | 589..17 | 1715 | 87.2 | Minus |
Jon25Biii-RA | 827 | CG8871-RA | 231..795 | 589..21 | 1150 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8391760..8392340 | 598..17 | 2800 | 99.1 | Minus |
3L | 28110227 | 3L | 8392858..8393426 | 17..589 | 1635 | 86.8 | Plus |
2L | 23513712 | 2L | 4949973..4950537 | 21..589 | 1075 | 80.4 | Plus |
3R | 32079331 | 3R | 30487347..30487531 | 276..460 | 505 | 84.9 | Plus |
2L | 23513712 | 2L | 4954632..4954757 | 335..460 | 375 | 86.5 | Plus |
3L | 28110227 | 3L | 6053938..6054113 | 336..511 | 370 | 80.7 | Plus |
3L | 28110227 | 3L | 6052751..6052857 | 460..354 | 295 | 85 | Minus |
2L | 23513712 | 2L | 4954323..4954497 | 17..191 | 215 | 74.9 | Plus |
Blast to na_te.dros performed 2015-01-30 17:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5554..5592 | 275..313 | 105 | 74.4 | Plus |
BS13309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:34 Download gff for
BS13309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7118-PA | 203..783 | 17..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:13 Download gff for
BS13309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 221..803 | 13..598 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:15 Download gff for
BS13309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 221..803 | 13..598 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:15 Download gff for
BS13309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8391760..8392342 | 13..598 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:13 Download gff for
BS13309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8384860..8385442 | 13..598 | 98 | | Minus |
BS13309.5prime Sequence
587 bp (531 high quality bases) assembled on 2006-10-13
> BS13309.5prime
GAAGTTATCAGTCGACATGAAGGTGTTCCTAACTATTCTGGCTTTGGCCG
TGGCCTCCGCCTCGGCGTACGAGAGCGTCGTGCACCCCAAGGATCTGTCC
AAGGTGGCCAAGATCGAGGGTCGCATCACCAACGGCTATCCGGCTGAGGA
GGGCAAGGCTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGT
GCGGTGGCTCCATCATCTCCAACGAGTGGGTCCTCACCGCCGAGCACTGC
ATCGGAGGTGATGCAGTGACTGTCTACTTCGGAGCAACCTGGCGCACCAA
CGCCCAGTTCACCCACTGGGTTGGAAGCGGCAACTTCATCACCCACGGAT
CTGCTGACATCGCCCTCATCCGCATTCCCCACGTGGACTTCTGGCACATG
GTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTACAACGACTACAA
CGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCTATGACGGCAGCC
CACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCC
GAGTGCGCCAGCTACTACGGAACCGGCACCGTCGGCG
BS13309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7118-PA | 783 | Jon66Ci-RA | 1..571 | 17..587 | 2855 | 100 | Plus |
CG7170-PA | 789 | Jon66Cii-RA | 358..552 | 362..556 | 975 | 100 | Plus |
CG8871-PA | 777 | Jon25Biii-RA | 340..534 | 353..547 | 525 | 90.7 | Plus |
CG7170-PA | 789 | Jon66Cii-RA | 110..200 | 117..207 | 430 | 98.9 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 367..453 | 356..442 | 285 | 93.1 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 367..453 | 356..442 | 285 | 93.1 | Plus |
CG8871-PA | 777 | Jon25Biii-RA | 133..241 | 149..257 | 270 | 89.9 | Plus |
CG7170-PA | 789 | Jon66Cii-RA | 265..320 | 269..324 | 255 | 98.2 | Plus |
CG18030-PA | 804 | Jon99Fi-RA | 397..456 | 380..439 | 200 | 93.3 | Plus |
CG2229-PA | 804 | Jon99Fii-RA | 397..456 | 380..439 | 175 | 91.6 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 266..309 | 273..316 | 170 | 95.4 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 266..309 | 273..316 | 170 | 95.4 | Plus |
CG8579-PA | 816 | Jon44E-RA | 424..462 | 404..442 | 170 | 97.4 | Plus |
CG8871-PA | 777 | Jon25Biii-RA | 262..303 | 275..316 | 160 | 95.2 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 133..174 | 149..190 | 160 | 95.2 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 133..174 | 149..190 | 160 | 95.2 | Plus |
CG6580-PA | 780 | Jon65Aii-RA | 340..378 | 356..394 | 145 | 94.8 | Plus |
CG8869-PA | 831 | Jon25Bii-RA | 415..456 | 380..421 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Ci-RA | 838 | CG7118-RA | 17..589 | 15..587 | 2865 | 100 | Plus |
Jon66Cii-RA | 830 | CG7170-RA | 113..571 | 117..572 | 1805 | 93 | Plus |
Jon25Biii-RA | 827 | CG8871-RA | 19..563 | 16..557 | 1330 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8391556..8392128 | 15..587 | 2865 | 100 | Plus |
3L | 28110227 | 3L | 8393079..8393537 | 572..117 | 1780 | 93 | Minus |
2L | 23513712 | 2L | 4950205..4950749 | 557..16 | 1280 | 82.8 | Minus |
3R | 32079331 | 3R | 30487347..30487531 | 540..356 | 505 | 84.9 | Minus |
2L | 23513712 | 2L | 4954791..4955054 | 340..86 | 395 | 78.4 | Minus |
3L | 28110227 | 3L | 6053938..6054152 | 480..266 | 385 | 78.6 | Minus |
2L | 23513712 | 2L | 4954632..4954757 | 481..356 | 375 | 86.5 | Minus |
3L | 28110227 | 3L | 6052751..6052857 | 356..462 | 295 | 85 | Plus |
2L | 23513712 | 2L | 4952922..4953001 | 191..112 | 235 | 86.2 | Minus |
Blast to na_te.dros performed 2015-02-10 17:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5554..5592 | 541..503 | 105 | 74.4 | Minus |
BS13309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:35 Download gff for
BS13309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7118-PA | 1..571 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:51 Download gff for
BS13309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 8..589 | 4..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:04 Download gff for
BS13309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 8..589 | 4..587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:04 Download gff for
BS13309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8391547..8392128 | 4..587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:51 Download gff for
BS13309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8384647..8385228 | 4..587 | 99 | | Plus |
BS13309.complete Sequence
815 bp assembled on 2006-11-01
GenBank Submission: FJ637420
> BS13309.complete
GAAGTTATCAGTCGACATGAAGGTGTTCCTAACTATTCTGGCTTTGGCCG
TGGCCTCCGCCTCGGCGTACGAGAGCGTCGTGCACCCCAAGGATCTGTCC
AAGGTGGCCAAGATCGAGGGTCGCATCACCAACGGCTATCCGGCTGAGGA
GGGCAAGGCTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGT
GCGGTGGCTCCATCATCTCCAACGAGTGGGTCCTCACCGCCGAGCACTGC
ATCGGAGGTGATGCAGTGACTGTCTACTTCGGAGCAACCTGGCGCACCAA
CGCCCAGTTCACCCACTGGGTTGGAAGCGGCAACTTCATCACCCACGGAT
CTGCTGACATCGCCCTCATCCGCATTCCCCACGTGGACTTCTGGCACATG
GTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTACAACGACTACAA
CGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCTATGACGGCAGCC
CACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCC
GAGTGCGCCAGCTACTACGGAACCGGCACCGTCGGCGACAACATCATCTG
CGTGCGCGTGGTCGATGGCAAGGGCACCTGCGGTGGCGACTCCGGCGGTC
CTCTGGTCACCCATGACGGCAGCAAGCTTGTGGGAGTCACCAACTGGGTG
TCGGGAGCCGGTTGCCAGGCTGGCCACCCCGCTGGCTTCCAGCGTGTGAC
CTACCACTTGGACTGGATCCGTGACCACACCGGCATTGCTTACTACTAAA
AGCTTTCTAGACCAT
BS13309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Ci-RA | 783 | CG7118-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Jon66Cii-RA | 789 | CG7170-PA | 110..789 | 117..799 | 2160 | 88.3 | Plus |
Jon25Biii-RA | 777 | CG8871-PA | 1..776 | 17..795 | 1530 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Ci-RA | 838 | CG7118-RA | 17..801 | 15..799 | 3925 | 100 | Plus |
Jon66Cii-RA | 830 | CG7170-RA | 113..792 | 117..799 | 2160 | 88.3 | Plus |
Jon25Biii-RA | 827 | CG8871-RA | 19..795 | 16..795 | 1535 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8391556..8392340 | 15..799 | 3925 | 100 | Plus |
3L | 28110227 | 3L | 8392858..8393537 | 799..117 | 2160 | 88.3 | Minus |
2L | 23513712 | 2L | 4949973..4950749 | 795..16 | 1535 | 80.3 | Minus |
3R | 32079331 | 3R | 30489360..30489544 | 356..540 | 505 | 84.9 | Plus |
3R | 32079331 | 3R | 30487347..30487531 | 540..356 | 505 | 84.9 | Minus |
3R | 32079331 | 3R | 29922608..29922792 | 356..540 | 460 | 83.2 | Plus |
3R | 32079331 | 3R | 29924037..29924221 | 540..356 | 460 | 83.2 | Minus |
2L | 23513712 | 2L | 4954791..4955054 | 340..86 | 395 | 78.4 | Minus |
3L | 28110227 | 3L | 6053938..6054152 | 480..266 | 385 | 78.6 | Minus |
2L | 23513712 | 2L | 4954632..4954757 | 481..356 | 375 | 86.5 | Minus |
2R | 25286936 | 2R | 8691844..8692089 | 356..601 | 360 | 76.4 | Plus |
3L | 28110227 | 3L | 6052751..6052857 | 356..462 | 295 | 85 | Plus |
3R | 32079331 | 3R | 30489083..30489320 | 109..337 | 295 | 76.9 | Plus |
3R | 32079331 | 3R | 30487571..30487808 | 337..109 | 280 | 76.5 | Minus |
3R | 32079331 | 3R | 29924258..29924490 | 340..117 | 255 | 76 | Minus |
2L | 23513712 | 2L | 4952922..4953001 | 191..112 | 235 | 86.2 | Minus |
2L | 23513712 | 2L | 4954323..4954497 | 799..625 | 215 | 74.9 | Minus |
2R | 25286936 | 2R | 8691573..8691718 | 109..251 | 215 | 78.1 | Plus |
3R | 32079331 | 3R | 30487110..30487271 | 786..625 | 210 | 75.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:20:15 has no hits.
BS13309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:03 Download gff for
BS13309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:45 Download gff for
BS13309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 6..801 | 4..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:15 Download gff for
BS13309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 19..799 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:03 Download gff for
BS13309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 6..801 | 4..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:42 Download gff for
BS13309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon66Ci-RA | 19..799 | 17..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:42 Download gff for
BS13309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8391558..8392338 | 17..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:15 Download gff for
BS13309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8384658..8385438 | 17..797 | 100 | | Plus |
BS13309.pep Sequence
Translation from 16 to 798
> BS13309.pep
MKVFLTILALAVASASAYESVVHPKDLSKVAKIEGRITNGYPAEEGKAPY
TVGLGFSGGWWCGGSIISNEWVLTAEHCIGGDAVTVYFGATWRTNAQFTH
WVGSGNFITHGSADIALIRIPHVDFWHMVNKVELPSYNDRYNDYNEWWAV
ACGWGGTYDGSPLPDYLQCVDLQIIHNSECASYYGTGTVGDNIICVRVVD
GKGTCGGDSGGPLVTHDGSKLVGVTNWVSGAGCQAGHPAGFQRVTYHLDW
IRDHTGIAYY*
BS13309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon66Ci-PA | 260 | CG7118-PA | 1..260 | 1..260 | 1454 | 100 | Plus |
Jon66Cii-PA | 262 | CG7170-PA | 1..262 | 1..260 | 1198 | 82.2 | Plus |
Jon25Biii-PA | 258 | CG8871-PA | 1..258 | 1..259 | 1179 | 82.3 | Plus |
Jon25Bi-PB | 266 | CG8867-PB | 1..266 | 1..260 | 940 | 68.3 | Plus |
Jon99Fi-PA | 267 | CG18030-PA | 4..267 | 5..259 | 871 | 63.1 | Plus |