Clone BS13309 Report

Search the DGRC for BS13309

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptJon66Ci-RA
Protein status:BS13309.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13309.3prime Sequence

598 bp (521 high quality bases) assembled on 2006-10-13

> BS13309.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAAGCAATGCCGGTGTGGTCACGGATC
CAGTCCAAGTGGTAGGTCACACGCTGGAAGCCAGCGGGGTGGCCAGCCTG
GCAACCGGCTCCCGACACCCAGTTGGTGACTCCCACAAGCTTGCTGCCGT
CATGGGTGACCAGAGGACCGCCGGAGTCGCCACCGCAGGTGCCCTTGCCA
TCGACCACGCGCACGCAGATGATGTTGTCGCCGACGGTGCCGGTTCCGTA
GTAGCTGGCGCACTCGGAGTTGTGGATGATCTGGAGATCGACACACTGCA
GGTAGTCGGGCAGTGGGCTGCCGTCATAGGTGCCTCCCCAGCCGCAGGCA
ACAGCCCACCATTCGTTGTAGTCGTTGTAGCGATCGTTGTAGCTGGGCAG
CTCCACCTTGTTCACCATGTGCCAGAAGTCCACGTGGGGAATGCGGATGA
GGGCGATGTCAGCAGATCCGTGAGTGATGAAGTTGCCGCTTCCAACCCAG
TGGGTGAACTGGGCGTTTGGTGCGCCAGGTTGCTCCGAAATAGACAGTCA
CTGCATCACCTCCGATGCAGTGCTCCGCGGTGAGGACCCCCTCGTTGG

BS13309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7118-PA 783 Jon66Ci-RA 283..783 517..17 2480 99.8 Minus
CG7170-PA 789 Jon66Cii-RA 358..552 454..260 975 100 Minus
CG8871-PA 777 Jon25Biii-RA 340..534 463..269 525 90.7 Minus
CG7118-PA 783 Jon66Ci-RA 203..284 598..517 335 96.3 Minus
CG8867-PA 801 Jon25Bi-RA 367..453 460..374 285 93.1 Minus
CG8867-PB 801 Jon25Bi-RB 367..453 460..374 285 93.1 Minus
CG7170-PA 789 Jon66Cii-RA 718..789 88..17 210 91.6 Minus
CG7170-PA 789 Jon66Cii-RA 615..685 191..121 205 91.5 Minus
CG18030-PA 804 Jon99Fi-RA 397..456 436..377 200 93.3 Minus
CG8871-PA 777 Jon25Biii-RA 712..767 85..30 180 92.8 Minus
CG2229-PA 804 Jon99Fii-RA 397..456 436..377 175 91.6 Minus
CG8579-PA 816 Jon44E-RA 424..462 412..374 170 97.4 Minus
CG6580-PA 780 Jon65Aii-RA 340..378 460..422 145 94.8 Minus
CG8869-PA 831 Jon25Bii-RA 415..456 436..395 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Jon66Ci-RA 838 CG7118-RA 221..801 598..17 2825 99.1 Minus
Jon66Cii-RA 830 CG7170-RA 224..792 589..17 1715 87.2 Minus
Jon25Biii-RA 827 CG8871-RA 231..795 589..21 1150 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8391760..8392340 598..17 2800 99.1 Minus
3L 28110227 3L 8392858..8393426 17..589 1635 86.8 Plus
2L 23513712 2L 4949973..4950537 21..589 1075 80.4 Plus
3R 32079331 3R 30487347..30487531 276..460 505 84.9 Plus
2L 23513712 2L 4954632..4954757 335..460 375 86.5 Plus
3L 28110227 3L 6053938..6054113 336..511 370 80.7 Plus
3L 28110227 3L 6052751..6052857 460..354 295 85 Minus
2L 23513712 2L 4954323..4954497 17..191 215 74.9 Plus
Blast to na_te.dros performed 2015-01-30 17:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 5554..5592 275..313 105 74.4 Plus

BS13309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:34 Download gff for BS13309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7118-PA 203..783 17..598 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:13 Download gff for BS13309.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 221..803 13..598 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:15 Download gff for BS13309.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 221..803 13..598 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:15 Download gff for BS13309.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8391760..8392342 13..598 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:13 Download gff for BS13309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8384860..8385442 13..598 98   Minus

BS13309.5prime Sequence

587 bp (531 high quality bases) assembled on 2006-10-13

> BS13309.5prime
GAAGTTATCAGTCGACATGAAGGTGTTCCTAACTATTCTGGCTTTGGCCG
TGGCCTCCGCCTCGGCGTACGAGAGCGTCGTGCACCCCAAGGATCTGTCC
AAGGTGGCCAAGATCGAGGGTCGCATCACCAACGGCTATCCGGCTGAGGA
GGGCAAGGCTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGT
GCGGTGGCTCCATCATCTCCAACGAGTGGGTCCTCACCGCCGAGCACTGC
ATCGGAGGTGATGCAGTGACTGTCTACTTCGGAGCAACCTGGCGCACCAA
CGCCCAGTTCACCCACTGGGTTGGAAGCGGCAACTTCATCACCCACGGAT
CTGCTGACATCGCCCTCATCCGCATTCCCCACGTGGACTTCTGGCACATG
GTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTACAACGACTACAA
CGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCTATGACGGCAGCC
CACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCC
GAGTGCGCCAGCTACTACGGAACCGGCACCGTCGGCG

BS13309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7118-PA 783 Jon66Ci-RA 1..571 17..587 2855 100 Plus
CG7170-PA 789 Jon66Cii-RA 358..552 362..556 975 100 Plus
CG8871-PA 777 Jon25Biii-RA 340..534 353..547 525 90.7 Plus
CG7170-PA 789 Jon66Cii-RA 110..200 117..207 430 98.9 Plus
CG8867-PA 801 Jon25Bi-RA 367..453 356..442 285 93.1 Plus
CG8867-PB 801 Jon25Bi-RB 367..453 356..442 285 93.1 Plus
CG8871-PA 777 Jon25Biii-RA 133..241 149..257 270 89.9 Plus
CG7170-PA 789 Jon66Cii-RA 265..320 269..324 255 98.2 Plus
CG18030-PA 804 Jon99Fi-RA 397..456 380..439 200 93.3 Plus
CG2229-PA 804 Jon99Fii-RA 397..456 380..439 175 91.6 Plus
CG8867-PA 801 Jon25Bi-RA 266..309 273..316 170 95.4 Plus
CG8867-PB 801 Jon25Bi-RB 266..309 273..316 170 95.4 Plus
CG8579-PA 816 Jon44E-RA 424..462 404..442 170 97.4 Plus
CG8871-PA 777 Jon25Biii-RA 262..303 275..316 160 95.2 Plus
CG8867-PA 801 Jon25Bi-RA 133..174 149..190 160 95.2 Plus
CG8867-PB 801 Jon25Bi-RB 133..174 149..190 160 95.2 Plus
CG6580-PA 780 Jon65Aii-RA 340..378 356..394 145 94.8 Plus
CG8869-PA 831 Jon25Bii-RA 415..456 380..421 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
Jon66Ci-RA 838 CG7118-RA 17..589 15..587 2865 100 Plus
Jon66Cii-RA 830 CG7170-RA 113..571 117..572 1805 93 Plus
Jon25Biii-RA 827 CG8871-RA 19..563 16..557 1330 83.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8391556..8392128 15..587 2865 100 Plus
3L 28110227 3L 8393079..8393537 572..117 1780 93 Minus
2L 23513712 2L 4950205..4950749 557..16 1280 82.8 Minus
3R 32079331 3R 30487347..30487531 540..356 505 84.9 Minus
2L 23513712 2L 4954791..4955054 340..86 395 78.4 Minus
3L 28110227 3L 6053938..6054152 480..266 385 78.6 Minus
2L 23513712 2L 4954632..4954757 481..356 375 86.5 Minus
3L 28110227 3L 6052751..6052857 356..462 295 85 Plus
2L 23513712 2L 4952922..4953001 191..112 235 86.2 Minus
Blast to na_te.dros performed 2015-02-10 17:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 5554..5592 541..503 105 74.4 Minus

BS13309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:35 Download gff for BS13309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7118-PA 1..571 17..587 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:51 Download gff for BS13309.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 8..589 4..587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:04 Download gff for BS13309.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 8..589 4..587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:04 Download gff for BS13309.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8391547..8392128 4..587 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:51 Download gff for BS13309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8384647..8385228 4..587 99   Plus

BS13309.complete Sequence

815 bp assembled on 2006-11-01

GenBank Submission: FJ637420

> BS13309.complete
GAAGTTATCAGTCGACATGAAGGTGTTCCTAACTATTCTGGCTTTGGCCG
TGGCCTCCGCCTCGGCGTACGAGAGCGTCGTGCACCCCAAGGATCTGTCC
AAGGTGGCCAAGATCGAGGGTCGCATCACCAACGGCTATCCGGCTGAGGA
GGGCAAGGCTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGT
GCGGTGGCTCCATCATCTCCAACGAGTGGGTCCTCACCGCCGAGCACTGC
ATCGGAGGTGATGCAGTGACTGTCTACTTCGGAGCAACCTGGCGCACCAA
CGCCCAGTTCACCCACTGGGTTGGAAGCGGCAACTTCATCACCCACGGAT
CTGCTGACATCGCCCTCATCCGCATTCCCCACGTGGACTTCTGGCACATG
GTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTACAACGACTACAA
CGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCTATGACGGCAGCC
CACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCC
GAGTGCGCCAGCTACTACGGAACCGGCACCGTCGGCGACAACATCATCTG
CGTGCGCGTGGTCGATGGCAAGGGCACCTGCGGTGGCGACTCCGGCGGTC
CTCTGGTCACCCATGACGGCAGCAAGCTTGTGGGAGTCACCAACTGGGTG
TCGGGAGCCGGTTGCCAGGCTGGCCACCCCGCTGGCTTCCAGCGTGTGAC
CTACCACTTGGACTGGATCCGTGACCACACCGGCATTGCTTACTACTAAA
AGCTTTCTAGACCAT

BS13309.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Jon66Ci-RA 783 CG7118-PA 1..783 17..799 3915 100 Plus
Jon66Cii-RA 789 CG7170-PA 110..789 117..799 2160 88.3 Plus
Jon25Biii-RA 777 CG8871-PA 1..776 17..795 1530 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Jon66Ci-RA 838 CG7118-RA 17..801 15..799 3925 100 Plus
Jon66Cii-RA 830 CG7170-RA 113..792 117..799 2160 88.3 Plus
Jon25Biii-RA 827 CG8871-RA 19..795 16..795 1535 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8391556..8392340 15..799 3925 100 Plus
3L 28110227 3L 8392858..8393537 799..117 2160 88.3 Minus
2L 23513712 2L 4949973..4950749 795..16 1535 80.3 Minus
3R 32079331 3R 30489360..30489544 356..540 505 84.9 Plus
3R 32079331 3R 30487347..30487531 540..356 505 84.9 Minus
3R 32079331 3R 29922608..29922792 356..540 460 83.2 Plus
3R 32079331 3R 29924037..29924221 540..356 460 83.2 Minus
2L 23513712 2L 4954791..4955054 340..86 395 78.4 Minus
3L 28110227 3L 6053938..6054152 480..266 385 78.6 Minus
2L 23513712 2L 4954632..4954757 481..356 375 86.5 Minus
2R 25286936 2R 8691844..8692089 356..601 360 76.4 Plus
3L 28110227 3L 6052751..6052857 356..462 295 85 Plus
3R 32079331 3R 30489083..30489320 109..337 295 76.9 Plus
3R 32079331 3R 30487571..30487808 337..109 280 76.5 Minus
3R 32079331 3R 29924258..29924490 340..117 255 76 Minus
2L 23513712 2L 4952922..4953001 191..112 235 86.2 Minus
2L 23513712 2L 4954323..4954497 799..625 215 74.9 Minus
2R 25286936 2R 8691573..8691718 109..251 215 78.1 Plus
3R 32079331 3R 30487110..30487271 786..625 210 75.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:20:15 has no hits.

BS13309.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:03 Download gff for BS13309.complete
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:45 Download gff for BS13309.complete
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 6..801 4..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:15 Download gff for BS13309.complete
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 19..799 17..797 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:03 Download gff for BS13309.complete
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 6..801 4..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:42 Download gff for BS13309.complete
Subject Subject Range Query Range Percent Splice Strand
Jon66Ci-RA 19..799 17..797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:42 Download gff for BS13309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8391558..8392338 17..797 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:15 Download gff for BS13309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8384658..8385438 17..797 100   Plus

BS13309.pep Sequence

Translation from 16 to 798

> BS13309.pep
MKVFLTILALAVASASAYESVVHPKDLSKVAKIEGRITNGYPAEEGKAPY
TVGLGFSGGWWCGGSIISNEWVLTAEHCIGGDAVTVYFGATWRTNAQFTH
WVGSGNFITHGSADIALIRIPHVDFWHMVNKVELPSYNDRYNDYNEWWAV
ACGWGGTYDGSPLPDYLQCVDLQIIHNSECASYYGTGTVGDNIICVRVVD
GKGTCGGDSGGPLVTHDGSKLVGVTNWVSGAGCQAGHPAGFQRVTYHLDW
IRDHTGIAYY*

BS13309.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Jon66Ci-PA 260 CG7118-PA 1..260 1..260 1454 100 Plus
Jon66Cii-PA 262 CG7170-PA 1..262 1..260 1198 82.2 Plus
Jon25Biii-PA 258 CG8871-PA 1..258 1..259 1179 82.3 Plus
Jon25Bi-PB 266 CG8867-PB 1..266 1..260 940 68.3 Plus
Jon99Fi-PA 267 CG18030-PA 4..267 5..259 871 63.1 Plus