Clone BS13311 Report

Search the DGRC for BS13311

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:11
Vector:pDNR-Dual
Associated Gene/Transcriptqm-RA
Protein status:BS13311.pep: full length peptide match
Sequenced Size:1049

Clone Sequence Records

BS13311.5prime Sequence

496 bp (372 high quality bases) assembled on 2006-10-13

> BS13311.5prime
GAAGTTATCACTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACT

BS13311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8593-PA 1017 qm-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
qm-RB 2543 CG8593-RB 298..777 17..496 2400 100 Plus
qm-RA 1934 CG8593-RA 298..777 17..496 2400 100 Plus
qm-RC 2507 CG8593-RC 519..741 274..496 1115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7348861..7349017 81..237 785 100 Plus
3L 28110227 3L 7351269..7351414 238..383 730 100 Plus
3L 28110227 3L 7351465..7351580 381..496 580 100 Plus
3L 28110227 3L 7348610..7348675 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:22:25 has no hits.

BS13311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:36 Download gff for BS13311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8593-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:28 Download gff for BS13311.5prime
Subject Subject Range Query Range Percent Splice Strand
qm-RA 293..777 9..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:24 Download gff for BS13311.5prime
Subject Subject Range Query Range Percent Splice Strand
qm-RA 293..777 9..496 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:24 Download gff for BS13311.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7348605..7348675 9..82 94 -> Plus
3L 7348863..7349017 83..237 100 -> Plus
3L 7351269..7351413 238..382 100 -> Plus
3L 7351467..7351580 383..496 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:28 Download gff for BS13311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7341705..7341775 9..82 94 -> Plus
arm_3L 7341963..7342117 83..237 100 -> Plus
arm_3L 7344369..7344513 238..382 100 -> Plus
arm_3L 7344567..7344680 383..496 100   Plus

BS13311.complete Sequence

1049 bp assembled on 2009-08-24

GenBank Submission: KX801977

> BS13311.complete
GAAGTTATCACTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGC
GCAAAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTC
AGCTCCAACAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTA
CTTTCAGATACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGG
AGAACAAGAGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCG
GTAATCCATGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACAT
ATTACGCCAGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCT
TGTTGGAAAAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCG
CTCGACGCAGAGGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTA
CATGGACCGCCTGCTCAACAAGCTGCTGTCGTGGAAGACGAGCGATAGCG
CCAGCATCACGCAGTCGAACCAGATCAATCACAACAACGTCTCACGCAGC
AGCCCCAACCAGAACACGCTCAATTGCAATTAGAAGCTTTCTAGACCAT

BS13311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
qm-RB 1017 CG8593-PB 1..1017 17..1033 5085 100 Plus
qm-RA 1017 CG8593-PA 1..1017 17..1033 5085 100 Plus
qm-RC 981 CG8593-PC 222..981 274..1033 3800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
qm-RB 2543 CG8593-RB 298..1318 17..1037 5090 99.9 Plus
qm-RA 1934 CG8593-RA 298..1318 17..1037 5090 99.9 Plus
qm-RC 2507 CG8593-RC 519..1282 274..1037 3805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7351465..7351727 381..643 1315 100 Plus
3L 28110227 3L 7352233..7352397 873..1037 810 99.4 Plus
3L 28110227 3L 7348861..7349017 81..237 785 100 Plus
3L 28110227 3L 7351269..7351414 238..383 730 100 Plus
3L 28110227 3L 7351971..7352100 747..876 650 100 Plus
3L 28110227 3L 7351793..7351897 642..746 525 100 Plus
3L 28110227 3L 7348610..7348675 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:29:02 has no hits.

BS13311.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:56 Download gff for BS13311.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 296..1312 17..1033 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:56 Download gff for BS13311.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 298..1314 17..1033 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:38 Download gff for BS13311.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 298..1314 17..1033 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:38 Download gff for BS13311.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7348610..7348675 17..82 100 -> Plus
3L 7348863..7349017 83..237 100 -> Plus
3L 7351269..7351413 238..382 100 -> Plus
3L 7351467..7351727 383..643 100 -> Plus
3L 7351795..7351897 644..746 100 -> Plus
3L 7351971..7352098 747..874 100 -> Plus
3L 7352235..7352393 875..1033 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:56 Download gff for BS13311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7341963..7342117 83..237 100 -> Plus
arm_3L 7344369..7344513 238..382 100 -> Plus
arm_3L 7345071..7345198 747..874 100 -> Plus
arm_3L 7345335..7345493 875..1033 100   Plus
arm_3L 7341710..7341775 17..82 100 -> Plus
arm_3L 7344567..7344827 383..643 100 -> Plus
arm_3L 7344895..7344997 644..746 100 -> Plus

BS13311.pep Sequence

Translation from 16 to 1032

> BS13311.pep
MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW
LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST
INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC
PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD
DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT
HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL
NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCN*

BS13311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
qm-PB 338 CG8593-PB 1..338 1..338 1732 100 Plus
qm-PA 338 CG8593-PA 1..338 1..338 1732 100 Plus
qm-PC 326 CG8593-PC 1..326 1..338 1650 96.4 Plus
qless-PB 436 CG31005-PB 182..424 57..299 158 24.7 Plus
qless-PA 436 CG31005-PA 182..424 57..299 158 24.7 Plus