Clone Sequence Records
BS13311.5prime Sequence
496 bp (372 high quality bases) assembled on 2006-10-13
> BS13311.5prime
GAAGTTATCACTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACT
BS13311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8593-PA | 1017 | qm-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-RB | 2543 | CG8593-RB | 298..777 | 17..496 | 2400 | 100 | Plus |
qm-RA | 1934 | CG8593-RA | 298..777 | 17..496 | 2400 | 100 | Plus |
qm-RC | 2507 | CG8593-RC | 519..741 | 274..496 | 1115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7348861..7349017 | 81..237 | 785 | 100 | Plus |
3L | 28110227 | 3L | 7351269..7351414 | 238..383 | 730 | 100 | Plus |
3L | 28110227 | 3L | 7351465..7351580 | 381..496 | 580 | 100 | Plus |
3L | 28110227 | 3L | 7348610..7348675 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:22:25 has no hits.
BS13311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:36 Download gff for
BS13311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8593-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:28 Download gff for
BS13311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 293..777 | 9..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:24 Download gff for
BS13311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 293..777 | 9..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:24 Download gff for
BS13311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7348605..7348675 | 9..82 | 94 | -> | Plus |
3L | 7348863..7349017 | 83..237 | 100 | -> | Plus |
3L | 7351269..7351413 | 238..382 | 100 | -> | Plus |
3L | 7351467..7351580 | 383..496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:28 Download gff for
BS13311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7341705..7341775 | 9..82 | 94 | -> | Plus |
arm_3L | 7341963..7342117 | 83..237 | 100 | -> | Plus |
arm_3L | 7344369..7344513 | 238..382 | 100 | -> | Plus |
arm_3L | 7344567..7344680 | 383..496 | 100 | | Plus |
BS13311.complete Sequence
1049 bp assembled on 2009-08-24
GenBank Submission: KX801977
> BS13311.complete
GAAGTTATCACTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGC
GCAAAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTC
AGCTCCAACAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTA
CTTTCAGATACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGG
AGAACAAGAGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCG
GTAATCCATGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACAT
ATTACGCCAGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCT
TGTTGGAAAAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCG
CTCGACGCAGAGGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTA
CATGGACCGCCTGCTCAACAAGCTGCTGTCGTGGAAGACGAGCGATAGCG
CCAGCATCACGCAGTCGAACCAGATCAATCACAACAACGTCTCACGCAGC
AGCCCCAACCAGAACACGCTCAATTGCAATTAGAAGCTTTCTAGACCAT
BS13311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-RB | 1017 | CG8593-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
qm-RA | 1017 | CG8593-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
qm-RC | 981 | CG8593-PC | 222..981 | 274..1033 | 3800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-RB | 2543 | CG8593-RB | 298..1318 | 17..1037 | 5090 | 99.9 | Plus |
qm-RA | 1934 | CG8593-RA | 298..1318 | 17..1037 | 5090 | 99.9 | Plus |
qm-RC | 2507 | CG8593-RC | 519..1282 | 274..1037 | 3805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7351465..7351727 | 381..643 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 7352233..7352397 | 873..1037 | 810 | 99.4 | Plus |
3L | 28110227 | 3L | 7348861..7349017 | 81..237 | 785 | 100 | Plus |
3L | 28110227 | 3L | 7351269..7351414 | 238..383 | 730 | 100 | Plus |
3L | 28110227 | 3L | 7351971..7352100 | 747..876 | 650 | 100 | Plus |
3L | 28110227 | 3L | 7351793..7351897 | 642..746 | 525 | 100 | Plus |
3L | 28110227 | 3L | 7348610..7348675 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:29:02 has no hits.
BS13311.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:56 Download gff for
BS13311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 296..1312 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:56 Download gff for
BS13311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 298..1314 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:38 Download gff for
BS13311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 298..1314 | 17..1033 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:38 Download gff for
BS13311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7348610..7348675 | 17..82 | 100 | -> | Plus |
3L | 7348863..7349017 | 83..237 | 100 | -> | Plus |
3L | 7351269..7351413 | 238..382 | 100 | -> | Plus |
3L | 7351467..7351727 | 383..643 | 100 | -> | Plus |
3L | 7351795..7351897 | 644..746 | 100 | -> | Plus |
3L | 7351971..7352098 | 747..874 | 100 | -> | Plus |
3L | 7352235..7352393 | 875..1033 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:56 Download gff for
BS13311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7341963..7342117 | 83..237 | 100 | -> | Plus |
arm_3L | 7344369..7344513 | 238..382 | 100 | -> | Plus |
arm_3L | 7345071..7345198 | 747..874 | 100 | -> | Plus |
arm_3L | 7345335..7345493 | 875..1033 | 100 | | Plus |
arm_3L | 7341710..7341775 | 17..82 | 100 | -> | Plus |
arm_3L | 7344567..7344827 | 383..643 | 100 | -> | Plus |
arm_3L | 7344895..7344997 | 644..746 | 100 | -> | Plus |
BS13311.pep Sequence
Translation from 16 to 1032
> BS13311.pep
MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW
LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST
INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC
PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD
DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT
HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL
NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCN*
BS13311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-PB | 338 | CG8593-PB | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PA | 338 | CG8593-PA | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PC | 326 | CG8593-PC | 1..326 | 1..338 | 1650 | 96.4 | Plus |
qless-PB | 436 | CG31005-PB | 182..424 | 57..299 | 158 | 24.7 | Plus |
qless-PA | 436 | CG31005-PA | 182..424 | 57..299 | 158 | 24.7 | Plus |