Clone BS13313 Report

Search the DGRC for BS13313

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG43386-RC
Protein status:BS13313.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13313.3prime Sequence

531 bp (519 high quality bases) assembled on 2006-10-13

> BS13313.3prime
ATGGTCTAGAAAGCTTCTAGTAGCCCGCCTCATCGGAATCGGGAGCTGGT
GTCGTCACGCCGGCGATTCCATTAACTCCGCCAGATGATCCCTGCAGGAT
GGGTCCCGAGAAGCTGAGGAACTTGGAAACCACATTGCCCAATCCGGCGT
TCGCATTTCCGCCGCCCGAGGAGGAGCCACTAAAGGCGGTAATCGTGGTC
AGCACACCGGTGGTCAGGTCATTAGCAATGTTGCCAATCGAACGGATCTT
TGGCGACACCACGGCGGTAATCAGAGTCTGGAAGTCCTTGATGGGCACCG
GCGACTTGATGTCCCACTGCTTGTTCTTTTCGATATTCGATCGGTCCAGC
TGCTCGATCACCCGCGTCTTTGTATCCAGGAAGTTGTCGATTTTGCCAAA
CACAAAACCGAGCACTGCGTTCTTAGCCTCGAATGTGGCATCGGGCAGTT
TTCTTTTGTTGCGCTCCTGGACACTTAACACCTCCTCTGCGTTGATAGGA
TTCAGGTCGGGATCGCCTGCTATCCTGGGAA

BS13313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15251-PA 627 CG15251-RA 128..627 516..17 2475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 1134 CG43386-RD 373..883 528..17 2520 99.6 Minus
CG43386-RC 1036 CG43386-RC 275..785 528..17 2520 99.6 Minus
CG43386-RB 716 CG43386-RB 275..317 528..485 180 95.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9967574..9967951 17..394 1890 100 Plus
X 23542271 X 9968019..9968110 395..486 460 100 Plus
Blast to na_te.dros performed 2015-01-31 10:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 888..932 79..35 108 71.1 Minus

BS13313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:37 Download gff for BS13313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15251-PA 116..627 17..529 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:17 Download gff for BS13313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 272..785 17..531 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:51 Download gff for BS13313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 272..785 17..531 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:51 Download gff for BS13313.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9967574..9967951 17..394 100 <- Plus
X 9968019..9968108 395..484 100 <- Plus
X 9970353..9970397 485..531 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:17 Download gff for BS13313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9861607..9861984 17..394 100 <- Plus
arm_X 9862052..9862141 395..484 100 <- Plus
arm_X 9864386..9864430 485..531 93   Plus

BS13313.5prime Sequence

558 bp (496 high quality bases) assembled on 2006-10-13

> BS13313.5prime
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCCGACCAC
CCGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGC
GGAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGGTCCTCAGCTT
CTCGGGAC

BS13313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15251-PA 627 CG15251-RA 1..435 17..451 2150 99.7 Plus
CG15251-PA 627 CG15251-RA 434..541 451..558 515 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 1134 CG43386-RD 257..797 17..558 2655 99.4 Plus
CG43386-RC 1036 CG43386-RC 159..699 17..558 2655 99.4 Plus
CG43386-RB 716 CG43386-RB 159..317 17..175 795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9967660..9967951 558..266 1385 99 Minus
X 23542271 X 9970352..9970511 176..17 800 100 Minus
X 23542271 X 9968019..9968110 265..174 460 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:12 has no hits.

BS13313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:38 Download gff for BS13313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15251-PA 1..541 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:22 Download gff for BS13313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..699 17..558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:51 Download gff for BS13313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..699 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:51 Download gff for BS13313.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9970353..9970511 17..175 100   Minus
X 9967660..9967951 266..558 98 <- Minus
X 9968019..9968108 176..265 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:22 Download gff for BS13313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9861693..9861984 266..558 98 <- Minus
arm_X 9862052..9862141 176..265 100 <- Minus
arm_X 9864386..9864544 17..175 100   Minus

BS13313.complete Sequence

659 bp assembled on 2006-11-01

GenBank Submission: FJ637422

> BS13313.complete
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCTGACCAC
CGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCG
GAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTC
TCGGGACCCATCCTGCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGG
CGTGACGACACCAGCTCCCGATTCCGATGAGGCGGGCTACTAGAAGCTTT
CTAGACCAT

BS13313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 627 CG43386-PD 1..627 17..643 3135 100 Plus
CG43386-RC 627 CG43386-PC 1..627 17..643 3135 100 Plus
CG43386-RB 462 CG43386-PB 1..159 17..175 795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 1134 CG43386-RD 257..883 17..643 3135 100 Plus
CG43386-RC 1036 CG43386-RC 159..785 17..643 3135 100 Plus
CG43386-RB 716 CG43386-RB 159..317 17..175 795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9967574..9967951 643..266 1890 100 Minus
X 23542271 X 9970352..9970511 176..17 800 100 Minus
X 23542271 X 9968019..9968110 265..174 460 100 Minus
Blast to na_te.dros performed 2014-11-27 15:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 888..932 581..625 108 71.1 Plus

BS13313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:40 Download gff for BS13313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:46 Download gff for BS13313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 153..779 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:52 Download gff for BS13313.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..785 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:41 Download gff for BS13313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 153..779 17..643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:21 Download gff for BS13313.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..785 17..643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:21 Download gff for BS13313.complete
Subject Subject Range Query Range Percent Splice Strand
X 9967574..9967951 266..643 100 <- Minus
X 9968019..9968108 176..265 100 <- Minus
X 9970353..9970511 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:52 Download gff for BS13313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9861607..9861984 266..643 100 <- Minus
arm_X 9862052..9862141 176..265 100 <- Minus
arm_X 9864386..9864544 17..175 100   Minus

BS13313.pep Sequence

Translation from 16 to 642

> BS13313.pep
MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI
NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD
RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT
ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA
PDSDEAGY*

BS13313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-PD 208 CG43386-PD 1..208 1..208 1039 100 Plus
CG43386-PC 208 CG15251-PA 1..208 1..208 1039 100 Plus
CG43386-PB 153 CG15250-PA 1..100 1..101 268 62.4 Plus