Clone Sequence Records
BS13313.3prime Sequence
531 bp (519 high quality bases) assembled on 2006-10-13
> BS13313.3prime
ATGGTCTAGAAAGCTTCTAGTAGCCCGCCTCATCGGAATCGGGAGCTGGT
GTCGTCACGCCGGCGATTCCATTAACTCCGCCAGATGATCCCTGCAGGAT
GGGTCCCGAGAAGCTGAGGAACTTGGAAACCACATTGCCCAATCCGGCGT
TCGCATTTCCGCCGCCCGAGGAGGAGCCACTAAAGGCGGTAATCGTGGTC
AGCACACCGGTGGTCAGGTCATTAGCAATGTTGCCAATCGAACGGATCTT
TGGCGACACCACGGCGGTAATCAGAGTCTGGAAGTCCTTGATGGGCACCG
GCGACTTGATGTCCCACTGCTTGTTCTTTTCGATATTCGATCGGTCCAGC
TGCTCGATCACCCGCGTCTTTGTATCCAGGAAGTTGTCGATTTTGCCAAA
CACAAAACCGAGCACTGCGTTCTTAGCCTCGAATGTGGCATCGGGCAGTT
TTCTTTTGTTGCGCTCCTGGACACTTAACACCTCCTCTGCGTTGATAGGA
TTCAGGTCGGGATCGCCTGCTATCCTGGGAA
BS13313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15251-PA | 627 | CG15251-RA | 128..627 | 516..17 | 2475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 1134 | CG43386-RD | 373..883 | 528..17 | 2520 | 99.6 | Minus |
CG43386-RC | 1036 | CG43386-RC | 275..785 | 528..17 | 2520 | 99.6 | Minus |
CG43386-RB | 716 | CG43386-RB | 275..317 | 528..485 | 180 | 95.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9967574..9967951 | 17..394 | 1890 | 100 | Plus |
X | 23542271 | X | 9968019..9968110 | 395..486 | 460 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 10:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osvaldo | 1543 | Osvaldo OSV 1543bp | 888..932 | 79..35 | 108 | 71.1 | Minus |
BS13313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:37 Download gff for
BS13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-PA | 116..627 | 17..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:17 Download gff for
BS13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 272..785 | 17..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:51 Download gff for
BS13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 272..785 | 17..531 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:51 Download gff for
BS13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9967574..9967951 | 17..394 | 100 | <- | Plus |
X | 9968019..9968108 | 395..484 | 100 | <- | Plus |
X | 9970353..9970397 | 485..531 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:17 Download gff for
BS13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9861607..9861984 | 17..394 | 100 | <- | Plus |
arm_X | 9862052..9862141 | 395..484 | 100 | <- | Plus |
arm_X | 9864386..9864430 | 485..531 | 93 | | Plus |
BS13313.5prime Sequence
558 bp (496 high quality bases) assembled on 2006-10-13
> BS13313.5prime
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCCGACCAC
CCGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGC
GGAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGGTCCTCAGCTT
CTCGGGAC
BS13313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15251-PA | 627 | CG15251-RA | 1..435 | 17..451 | 2150 | 99.7 | Plus |
CG15251-PA | 627 | CG15251-RA | 434..541 | 451..558 | 515 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 1134 | CG43386-RD | 257..797 | 17..558 | 2655 | 99.4 | Plus |
CG43386-RC | 1036 | CG43386-RC | 159..699 | 17..558 | 2655 | 99.4 | Plus |
CG43386-RB | 716 | CG43386-RB | 159..317 | 17..175 | 795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9967660..9967951 | 558..266 | 1385 | 99 | Minus |
X | 23542271 | X | 9970352..9970511 | 176..17 | 800 | 100 | Minus |
X | 23542271 | X | 9968019..9968110 | 265..174 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:12 has no hits.
BS13313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:38 Download gff for
BS13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-PA | 1..541 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:22 Download gff for
BS13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..699 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:51 Download gff for
BS13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..699 | 17..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:51 Download gff for
BS13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9970353..9970511 | 17..175 | 100 | | Minus |
X | 9967660..9967951 | 266..558 | 98 | <- | Minus |
X | 9968019..9968108 | 176..265 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:22 Download gff for
BS13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9861693..9861984 | 266..558 | 98 | <- | Minus |
arm_X | 9862052..9862141 | 176..265 | 100 | <- | Minus |
arm_X | 9864386..9864544 | 17..175 | 100 | | Minus |
BS13313.complete Sequence
659 bp assembled on 2006-11-01
GenBank Submission: FJ637422
> BS13313.complete
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCTGACCAC
CGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCG
GAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTC
TCGGGACCCATCCTGCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGG
CGTGACGACACCAGCTCCCGATTCCGATGAGGCGGGCTACTAGAAGCTTT
CTAGACCAT
BS13313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 627 | CG43386-PD | 1..627 | 17..643 | 3135 | 100 | Plus |
CG43386-RC | 627 | CG43386-PC | 1..627 | 17..643 | 3135 | 100 | Plus |
CG43386-RB | 462 | CG43386-PB | 1..159 | 17..175 | 795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 1134 | CG43386-RD | 257..883 | 17..643 | 3135 | 100 | Plus |
CG43386-RC | 1036 | CG43386-RC | 159..785 | 17..643 | 3135 | 100 | Plus |
CG43386-RB | 716 | CG43386-RB | 159..317 | 17..175 | 795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9967574..9967951 | 643..266 | 1890 | 100 | Minus |
X | 23542271 | X | 9970352..9970511 | 176..17 | 800 | 100 | Minus |
X | 23542271 | X | 9968019..9968110 | 265..174 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osvaldo | 1543 | Osvaldo OSV 1543bp | 888..932 | 581..625 | 108 | 71.1 | Plus |
BS13313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:40 Download gff for
BS13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-RA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:46 Download gff for
BS13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-RA | 153..779 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:52 Download gff for
BS13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..785 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:41 Download gff for
BS13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-RA | 153..779 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:21 Download gff for
BS13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..785 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:21 Download gff for
BS13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9967574..9967951 | 266..643 | 100 | <- | Minus |
X | 9968019..9968108 | 176..265 | 100 | <- | Minus |
X | 9970353..9970511 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:52 Download gff for
BS13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9861607..9861984 | 266..643 | 100 | <- | Minus |
arm_X | 9862052..9862141 | 176..265 | 100 | <- | Minus |
arm_X | 9864386..9864544 | 17..175 | 100 | | Minus |
BS13313.pep Sequence
Translation from 16 to 642
> BS13313.pep
MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI
NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD
RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT
ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA
PDSDEAGY*
BS13313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-PD | 208 | CG43386-PD | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PC | 208 | CG15251-PA | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PB | 153 | CG15250-PA | 1..100 | 1..101 | 268 | 62.4 | Plus |