Clone BS13314 Report

Search the DGRC for BS13314

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG13362-RA
Protein status:BS13314.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13314.3prime Sequence

634 bp (603 high quality bases) assembled on 2006-10-13

> BS13314.3prime
ATGGTCTAGAAAGCTTCTAGACAGGACTGTCTGAAGTTATATCCTGTCTT
TCTGTCTGGGCCTTGATGGCAATGCCTTCCAGACTGTGACTCTGGCTCTG
GCCCTGATCCTGTTCCTGCCCCTGCCCCTGTTCCTCATCCTCGTCCTCTT
CCTCTCCCTCGTTATCTGTCTCGCCATCAACTTCCGCTTCCAATTCCTGT
CCCTCGATGTGACGAGCCGCCGGCTGGGACACGAACGATGTGGAGGAAGT
GGACAGCTGCGAAGGCAATGTGGCCGCTGTCGAGGATGAGACGAAACTGG
GCATACTGACCGGGCACATGCAGGGAACAAATTGAATGCGACTGTTACTG
GAGACCCCTTGCTCCGATACTACGGTCTGCTGCTGCGGCTGATAGTTGAA
GTAATCCGGATATGGATACTGAGGCCTGGCGTTATAGAGGTTGTTTACCC
GGCGATTGTACGCGGGATATTCACCAAAGCGCAGCAAGCTAGAAGTGGGT
CCTTCGGAGAAACTACTACTGGTGGACTGGGGCGGAGGTGGTACTGGTGG
TGGGGTTGTACTGGTGGTAGTAGTACTAGGTCTTGTTGTTGGTGCCGGAG
TGGTGGTTGTGGTGGTGGTAGTTGTTGTCGTTGG

BS13314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 969 CG13362-RA 352..969 634..17 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 1686 CG13362-RA 484..1101 634..17 3090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 749826..750443 17..634 3090 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:41:36 has no hits.

BS13314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:38 Download gff for BS13314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-PA 352..969 17..634 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:28 Download gff for BS13314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 484..1101 17..634 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:02 Download gff for BS13314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 484..1101 17..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:02 Download gff for BS13314.3prime
Subject Subject Range Query Range Percent Splice Strand
X 749826..750443 17..634 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:28 Download gff for BS13314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 643859..644476 17..634 100   Plus

BS13314.5prime Sequence

653 bp (651 high quality bases) assembled on 2006-10-13

> BS13314.5prime
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTTCACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCA

BS13314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 969 CG13362-RA 1..637 17..653 3135 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 1686 CG13362-RA 133..769 17..653 3155 99.7 Plus
CG5254-RB 1362 CG5254-RB 1..427 464..34 1940 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 750158..750714 653..97 2755 99.6 Minus
X 23542271 X 750772..750835 97..34 320 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:42:22 has no hits.

BS13314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:38 Download gff for BS13314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-PA 1..636 17..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:37 Download gff for BS13314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 126..768 9..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:30 Download gff for BS13314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 126..768 9..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:30 Download gff for BS13314.5prime
Subject Subject Range Query Range Percent Splice Strand
X 750159..750714 97..652 99 <- Minus
X 750773..750834 35..96 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:37 Download gff for BS13314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 644192..644747 97..652 99 <- Minus
arm_X 644806..644867 35..96 100 <- Minus

BS13314.complete Sequence

1001 bp assembled on 2006-11-01

GenBank Submission: FJ637423

> BS13314.complete
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGCCCGGTCAGTATG
CCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCCTTCGCAGCTGTC
CACTTCCTCCACATCGTTCGTGTCCCAGCCGGCGGCTCGTCACATCGAGG
GACAGGAATTGGAAGCGGAAGTTGATGGCGAGACAGATAACGAGGGAGAG
GAAGAGGACGAGGATGAGGAACAGGGGCAGGGGCAGGAACAGGATCAGGG
CCAGAGCCAGAGTCACAGTCTGGAAGGCATTGCCATCAAGGCCCAGACAG
AAAGACAGGATATAACTTCAGACAGTCCTGTCTAGAAGCTTTCTAGACCA
T

BS13314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 969 CG13362-PA 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 1686 CG13362-RA 133..1101 17..985 4845 100 Plus
CG5254-RB 1362 CG5254-RB 1..427 464..34 1890 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 749826..750714 985..97 4445 100 Minus
X 23542271 X 750772..750835 97..34 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:09:39 has no hits.

BS13314.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:42 Download gff for BS13314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:27 Download gff for BS13314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 122..1097 9..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:45 Download gff for BS13314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 133..1101 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:42 Download gff for BS13314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 122..1097 9..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:08 Download gff for BS13314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 133..1101 17..985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:08 Download gff for BS13314.complete
Subject Subject Range Query Range Percent Splice Strand
X 749826..750714 97..985 100 <- Minus
X 750773..750834 35..96 100 <- Minus
X 751152..751169 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:45 Download gff for BS13314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 643859..644747 97..985 100 <- Minus
arm_X 644806..644867 35..96 100 <- Minus
arm_X 645185..645202 17..34 100   Minus

BS13314.pep Sequence

Translation from 16 to 984

> BS13314.pep
MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT
YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT
DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP
PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP
QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS
FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH
SLEGIAIKAQTERQDITSDSPV*

BS13314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 322 CG13362-PA 1..322 1..322 1684 100 Plus
Sgs1-PA 1286 CG3047-PA 327..489 90..250 159 30.7 Plus
CG43798-PA 213 CG43798-PA 128..197 105..166 152 48.6 Plus