Clone Sequence Records
BS13314.3prime Sequence
634 bp (603 high quality bases) assembled on 2006-10-13
> BS13314.3prime
ATGGTCTAGAAAGCTTCTAGACAGGACTGTCTGAAGTTATATCCTGTCTT
TCTGTCTGGGCCTTGATGGCAATGCCTTCCAGACTGTGACTCTGGCTCTG
GCCCTGATCCTGTTCCTGCCCCTGCCCCTGTTCCTCATCCTCGTCCTCTT
CCTCTCCCTCGTTATCTGTCTCGCCATCAACTTCCGCTTCCAATTCCTGT
CCCTCGATGTGACGAGCCGCCGGCTGGGACACGAACGATGTGGAGGAAGT
GGACAGCTGCGAAGGCAATGTGGCCGCTGTCGAGGATGAGACGAAACTGG
GCATACTGACCGGGCACATGCAGGGAACAAATTGAATGCGACTGTTACTG
GAGACCCCTTGCTCCGATACTACGGTCTGCTGCTGCGGCTGATAGTTGAA
GTAATCCGGATATGGATACTGAGGCCTGGCGTTATAGAGGTTGTTTACCC
GGCGATTGTACGCGGGATATTCACCAAAGCGCAGCAAGCTAGAAGTGGGT
CCTTCGGAGAAACTACTACTGGTGGACTGGGGCGGAGGTGGTACTGGTGG
TGGGGTTGTACTGGTGGTAGTAGTACTAGGTCTTGTTGTTGGTGCCGGAG
TGGTGGTTGTGGTGGTGGTAGTTGTTGTCGTTGG
BS13314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-PA | 969 | CG13362-RA | 352..969 | 634..17 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 1686 | CG13362-RA | 484..1101 | 634..17 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 749826..750443 | 17..634 | 3090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:41:36 has no hits.
BS13314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:38 Download gff for
BS13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-PA | 352..969 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:28 Download gff for
BS13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 484..1101 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:02 Download gff for
BS13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 484..1101 | 17..634 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:02 Download gff for
BS13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 749826..750443 | 17..634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:28 Download gff for
BS13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 643859..644476 | 17..634 | 100 | | Plus |
BS13314.5prime Sequence
653 bp (651 high quality bases) assembled on 2006-10-13
> BS13314.5prime
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTTCACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCA
BS13314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-PA | 969 | CG13362-RA | 1..637 | 17..653 | 3135 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 1686 | CG13362-RA | 133..769 | 17..653 | 3155 | 99.7 | Plus |
CG5254-RB | 1362 | CG5254-RB | 1..427 | 464..34 | 1940 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 750158..750714 | 653..97 | 2755 | 99.6 | Minus |
X | 23542271 | X | 750772..750835 | 97..34 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:42:22 has no hits.
BS13314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:38 Download gff for
BS13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-PA | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:37 Download gff for
BS13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 126..768 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:30 Download gff for
BS13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 126..768 | 9..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:30 Download gff for
BS13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 750159..750714 | 97..652 | 99 | <- | Minus |
X | 750773..750834 | 35..96 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:37 Download gff for
BS13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 644192..644747 | 97..652 | 99 | <- | Minus |
arm_X | 644806..644867 | 35..96 | 100 | <- | Minus |
BS13314.complete Sequence
1001 bp assembled on 2006-11-01
GenBank Submission: FJ637423
> BS13314.complete
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGCCCGGTCAGTATG
CCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCCTTCGCAGCTGTC
CACTTCCTCCACATCGTTCGTGTCCCAGCCGGCGGCTCGTCACATCGAGG
GACAGGAATTGGAAGCGGAAGTTGATGGCGAGACAGATAACGAGGGAGAG
GAAGAGGACGAGGATGAGGAACAGGGGCAGGGGCAGGAACAGGATCAGGG
CCAGAGCCAGAGTCACAGTCTGGAAGGCATTGCCATCAAGGCCCAGACAG
AAAGACAGGATATAACTTCAGACAGTCCTGTCTAGAAGCTTTCTAGACCA
T
BS13314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 969 | CG13362-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 1686 | CG13362-RA | 133..1101 | 17..985 | 4845 | 100 | Plus |
CG5254-RB | 1362 | CG5254-RB | 1..427 | 464..34 | 1890 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 749826..750714 | 985..97 | 4445 | 100 | Minus |
X | 23542271 | X | 750772..750835 | 97..34 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:09:39 has no hits.
BS13314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:42 Download gff for
BS13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:27 Download gff for
BS13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 122..1097 | 9..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:45 Download gff for
BS13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 133..1101 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:42 Download gff for
BS13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 122..1097 | 9..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:08 Download gff for
BS13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 133..1101 | 17..985 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:08 Download gff for
BS13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 749826..750714 | 97..985 | 100 | <- | Minus |
X | 750773..750834 | 35..96 | 100 | <- | Minus |
X | 751152..751169 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:45 Download gff for
BS13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 643859..644747 | 97..985 | 100 | <- | Minus |
arm_X | 644806..644867 | 35..96 | 100 | <- | Minus |
arm_X | 645185..645202 | 17..34 | 100 | | Minus |
BS13314.pep Sequence
Translation from 16 to 984
> BS13314.pep
MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT
YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT
DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP
PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP
QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS
FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH
SLEGIAIKAQTERQDITSDSPV*
BS13314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-PA | 322 | CG13362-PA | 1..322 | 1..322 | 1684 | 100 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 327..489 | 90..250 | 159 | 30.7 | Plus |
CG43798-PA | 213 | CG43798-PA | 128..197 | 105..166 | 152 | 48.6 | Plus |