Clone BS13319 Report

Search the DGRC for BS13319

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptNca-RA
Protein status:BS13319.pep: full length peptide match
Sequenced Size:605

Clone Sequence Records

BS13319.complete Sequence

605 bp assembled on 2010-07-02

GenBank Submission: KX803642

> BS13319.complete
GAAGTTATCAGTCGACATGGGAAAGCAAAATAGTAAACTAAAACCAGAAG
TTTTGGAGGATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAA
GAATGGTATAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGT
AGAAGAGTTTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTA
GCAAGTTTGCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGC
ACTATAGACTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGG
CAAACTCGAGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATG
GGAACGGATACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATA
TATAAAATGGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCC
TGAGAAACGAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATG
GGAAATTAAGCTTGGAAGAGTTCATAGAAGGAGCCAAAAGTGATCCATCA
ATAGTACGATTATTACAGTGTGATCCACAGTCTCATTAAAAGCTTTCTAG
ACCAT

BS13319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-RA 573 CG7641-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-RA 899 CG7641-RA 245..817 17..589 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19997292..19997486 395..589 975 100 Plus
3L 28110227 3L 19997029..19997220 204..395 960 100 Plus
3L 28110227 3L 19996848..19996968 85..205 605 100 Plus
3L 28110227 3L 19996711..19996780 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:19:30 has no hits.

BS13319.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:41 Download gff for BS13319.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 209..779 17..587 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:37 Download gff for BS13319.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 245..815 17..587 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:49 Download gff for BS13319.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 245..815 17..587 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:49 Download gff for BS13319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19997292..19997484 395..587 100   Plus
3L 19997031..19997219 206..394 100 -> Plus
3L 19996711..19996780 17..86 100 -> Plus
3L 19996850..19996968 87..205 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:37 Download gff for BS13319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19990131..19990319 206..394 100 -> Plus
arm_3L 19989811..19989880 17..86 100 -> Plus
arm_3L 19989950..19990068 87..205 100 -> Plus
arm_3L 19990392..19990584 395..587 100   Plus

BS13319.pep Sequence

Translation from 16 to 588

> BS13319.pep
MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKK
IYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK
LKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTD
KIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQSH*

BS13319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-PA 190 CG7641-PA 1..190 1..190 1002 100 Plus
Frq1-PE 187 CG5744-PE 1..182 1..183 582 60.1 Plus
Frq1-PD 187 CG5744-PD 1..182 1..183 582 60.1 Plus
Frq1-PC 187 CG5744-PC 1..182 1..183 582 60.1 Plus
Frq1-PB 187 CG5744-PB 1..182 1..183 582 60.1 Plus