BS13319.complete Sequence
605 bp assembled on 2010-07-02
GenBank Submission: KX803642
> BS13319.complete
GAAGTTATCAGTCGACATGGGAAAGCAAAATAGTAAACTAAAACCAGAAG
TTTTGGAGGATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAA
GAATGGTATAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGT
AGAAGAGTTTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTA
GCAAGTTTGCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGC
ACTATAGACTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGG
CAAACTCGAGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATG
GGAACGGATACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATA
TATAAAATGGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCC
TGAGAAACGAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATG
GGAAATTAAGCTTGGAAGAGTTCATAGAAGGAGCCAAAAGTGATCCATCA
ATAGTACGATTATTACAGTGTGATCCACAGTCTCATTAAAAGCTTTCTAG
ACCAT
BS13319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-RA | 573 | CG7641-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-RA | 899 | CG7641-RA | 245..817 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19997292..19997486 | 395..589 | 975 | 100 | Plus |
3L | 28110227 | 3L | 19997029..19997220 | 204..395 | 960 | 100 | Plus |
3L | 28110227 | 3L | 19996848..19996968 | 85..205 | 605 | 100 | Plus |
3L | 28110227 | 3L | 19996711..19996780 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:19:30 has no hits.
BS13319.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:41 Download gff for
BS13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 209..779 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:37 Download gff for
BS13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 245..815 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:49 Download gff for
BS13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 245..815 | 17..587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:49 Download gff for
BS13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19997292..19997484 | 395..587 | 100 | | Plus |
3L | 19997031..19997219 | 206..394 | 100 | -> | Plus |
3L | 19996711..19996780 | 17..86 | 100 | -> | Plus |
3L | 19996850..19996968 | 87..205 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:37 Download gff for
BS13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19990131..19990319 | 206..394 | 100 | -> | Plus |
arm_3L | 19989811..19989880 | 17..86 | 100 | -> | Plus |
arm_3L | 19989950..19990068 | 87..205 | 100 | -> | Plus |
arm_3L | 19990392..19990584 | 395..587 | 100 | | Plus |
BS13319.pep Sequence
Translation from 16 to 588
> BS13319.pep
MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKK
IYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK
LKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTD
KIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQSH*
BS13319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-PA | 190 | CG7641-PA | 1..190 | 1..190 | 1002 | 100 | Plus |
Frq1-PE | 187 | CG5744-PE | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PD | 187 | CG5744-PD | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PC | 187 | CG5744-PC | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PB | 187 | CG5744-PB | 1..182 | 1..183 | 582 | 60.1 | Plus |