Clone BS13322 Report

Search the DGRC for BS13322

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG7427-RA
Protein status:BS13322.pep: full length peptide match
Sequenced Size:899

Clone Sequence Records

BS13322.complete Sequence

899 bp assembled on 2010-02-09

GenBank Submission: KX803018

> BS13322.complete
GAAGTTATCAGTCGACATGAACAAACTGAAATCCAGCACGCACCGCGATA
AGGTGAAGAAGTTCATATCGCTGACACACACGGGGGAACAGACGGCAATA
TTCTGTTTGCAACAGAACGACTGGAAATTCGAGTTGGCCAGCGACAATTA
CTTCCAGAATCCGGAGTACTATTACCGGGAGTTGGATCGCAAGCGCATCG
AGCAGCTATTCATGCGCTATCGGGATCCCAGTGATCCCCTAAAGATCGGA
TCCCAGGGCGTAATCCACTTCCTGGAGGACTTGGACCTGAAGCCAGACTC
AAAACTGGTGCTGATCATAGCGTGGAAATTCCACGCCGAGGTGCAGTGCG
AGTTCTCGCGTGATGAGTTTATCAATGGCATGTGCGACCTGGGCATCGAT
AGCATCGACAAGCTAAAGACCAAGCTGCCCATCCTTGAGCAGGAGCTGAA
CGACGCCGGCAAGTTCAAGGACTTTTACCACTTTACCTTCAACTACGCCA
AGGATCCGGGGCAAAAGGGCATTGACCTGGAAATGGCAATCGCCTACTGG
TGCATCGTTCTTAGTGGGCGCTTCAAGTTCTTGGACATCTGGTGCCAGTT
CCTCGAGGAGAAACACAAGCGGGCCATCTCGCGAGATACGTGGAACCTGC
TGCTCGACTTTGCCACCAACATCGACGACCGGATGAGCAACTACGATTCG
GAGGGCGCCTGGCCGGTTCTAATAGACGACTTTGTGGAGTGGTGCCAGGA
GAACGATCATCTCAAGGAGGACTCCTCGCCGGCATCCGGCTACCAGCAGC
AGTCCAGTGCTAGCTCCAGCTCCCAAAAGAACATATCCAGCGCCTACCAG
ACCTCGCACAGTACAAACATGAACTATGGCTAAAAGCTTTCTAGACCAT

BS13322.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RE 867 CG7427-PE 1..867 17..883 4335 100 Plus
CG7427-RA 867 CG7427-PA 1..867 17..883 4335 100 Plus
CG7427-RD 876 CG7427-PD 12..876 19..883 4325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RE 1226 CG7427-RE 213..1079 17..883 4335 100 Plus
CG7427-RA 1601 CG7427-RA 301..1167 17..883 4335 100 Plus
CG7427-RD 1472 CG7427-RD 461..1325 19..883 4325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15564261..15565125 19..883 4325 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:30:39 has no hits.

BS13322.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:51 Download gff for BS13322.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 290..1154 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:45 Download gff for BS13322.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 301..1165 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:01 Download gff for BS13322.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 290..1154 17..881 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:37 Download gff for BS13322.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 301..1165 17..881 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:37 Download gff for BS13322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15564260..15565123 17..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:45 Download gff for BS13322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15557360..15558223 17..881 99   Plus

BS13322.5prime Sequence

476 bp (465 high quality bases) assembled on 2006-10-13

> BS13322.5prime
GAAGTTATCAGTCGACATGAACAAACTGAAATCCAGCACGCACCGCGATA
AGGTGAAGAAGTTCATATCGCTGACACACACGGGGGAACAGACGGCAATA
TTCTGTTTGCAACAGAACGACTGGAAATTCGAGTTGGCCAGCGACAATTA
CTTCCAGAATCCGGAGTACTATTACCGGGAGTTGGATCGCAAGCGCATCG
AGCAGCTATTCATGCGCTATCGGGATCCCAGTGATCCCCTAAAGATCGGA
TCCCAGGGCGTAATCCACTTCCTGGAGGACTTGGACCTGAAGCCAGACTC
AAAACTGGTGCTGATCATAGCGTGGAAATTCCACGCCGAGGTGCAGTGCG
AGTTCTCGCGTGATGAGTTTATCAATGGCATGTGCGACCTGTGCATCGAT
AGCATCGACAAGCTAAAGACCAAGCTGCCCATCCTTGAGCAGGAGCTGAA
CGACCCCGGCAAGTTCAAGGACTTTT

BS13322.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-PA 867 CG7427-RA 1..460 17..476 2250 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RE 1226 CG7427-RE 213..672 17..476 2270 99.6 Plus
CG7427-RA 1601 CG7427-RA 301..760 17..476 2270 99.6 Plus
CG7427-RD 1472 CG7427-RD 461..918 19..476 2260 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15564261..15564718 19..476 2260 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 22:50:57 has no hits.

BS13322.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:41 Download gff for BS13322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-PA 1..460 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:36 Download gff for BS13322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 294..760 9..476 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:13 Download gff for BS13322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 294..760 9..476 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:13 Download gff for BS13322.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15564262..15564718 20..476 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:36 Download gff for BS13322.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15557362..15557818 20..476 99   Plus

BS13322.pep Sequence

Translation from 16 to 882

> BS13322.pep
MNKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPE
YYYRELDRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLI
IAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKF
KDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFLDIWCQFLEEKH
KRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLK
EDSSPASGYQQQSSASSSSQKNISSAYQTSHSTNMNYG*

BS13322.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-PE 288 CG7427-PE 1..288 1..288 1549 100 Plus
CG7427-PA 288 CG7427-PA 1..288 1..288 1549 100 Plus
CG7427-PC 297 CG7427-PC 10..297 1..288 1545 99.7 Plus
CG7427-PD 291 CG7427-PD 5..291 2..288 1544 100 Plus
CG7427-PB 291 CG7427-PB 5..291 2..288 1544 100 Plus