Clone Sequence Records
BS13325.3prime Sequence
750 bp (727 high quality bases) assembled on 2006-10-13
> BS13325.3prime
ATGGTCTAGAAAGCTTTTAGACATCAGAGTGCTTTTTGATCCAGTCCTTA
AAGTAAAAGACCCTGGCATATCCGTCCGGGTAGGTGGACCCACATCCGTC
CACGACGAATCCGGCCACGCCCACCAGTTGGTTGTTATATACGGCCGGGC
CACCGGAATCGCCATTGCAAGCACCATTGTCCACCTGGTGGAGCAGGCAC
AGCTCGCCCTCAAATCCGAAATCGATCAGCTCCTCACACTGCTGCCTGGT
TATCGACTTTAGGGTGTTGTACTGCAGATAGCGTGGCAAGTCTCCCTGGT
GTTTGATCCTTCCCCATCCGGAAATTACGACATCTACATCCGCTGGCGTA
TCCACAGTGGGTAGATCGATGGGCTGAATGCTCGCGGACAGAATCAGTGG
GCTCTCTAGTCGCAGCAGAGCAACGTCGTTAAGGAAGTTACCATACTCCT
CGTGGACAATTACCTCGGCCACCTGGACAAGGACTCCACCGCTGAATCGA
TCGTTTGAGCCCGCTCGAATGGTGAAACGCTCCGCAGCGATTGGCGTAAT
CACATGATTCACGTCCTCGTTGGAGACACAATGGGCGGCGGTTAAGATGT
AGGTTCTGGTCAGAATTGAACCTCCACAGCTGTGGGAACCGGCGTTCCTC
AGGGAGACCTGGTGGGGAAACTGATTTTTTCACCGCATCCTCACCGCCCA
CCACTCGACCGTTCAGTTTACCAGGCGCCGACTGTACGGGCAGCACCAAG
BS13325.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2071-PA | 780 | Ser6-RA | 118..780 | 679..17 | 3315 | 100 | Minus |
CG1304-PA | 783 | CG1304-RA | 253..542 | 544..255 | 1150 | 95.8 | Minus |
CG2071-PA | 780 | Ser6-RA | 48..122 | 750..676 | 375 | 100 | Minus |
CG1304-PA | 783 | CG1304-RA | 118..221 | 679..576 | 320 | 92.3 | Minus |
CG1304-PA | 783 | CG1304-RA | 628..692 | 169..105 | 200 | 92.3 | Minus |
CG1304-PA | 783 | CG1304-RA | 85..122 | 713..676 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 901 | CG2071-RA | 66..798 | 750..17 | 3645 | 99.9 | Minus |
CG1304-RA | 893 | CG1304-RA | 72..753 | 742..60 | 2075 | 87.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20962708..20963440 | 17..750 | 3620 | 99.9 | Plus |
X | 23542271 | X | 20964667..20965348 | 60..742 | 1985 | 87 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:56:53 has no hits.
BS13325.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:43 Download gff for
BS13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2071-PA | 48..780 | 17..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:32 Download gff for
BS13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 66..805 | 9..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:27 Download gff for
BS13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 66..805 | 9..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:27 Download gff for
BS13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20962701..20963440 | 9..750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:32 Download gff for
BS13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20833728..20834467 | 9..750 | 99 | | Plus |
BS13325.5prime Sequence
739 bp (703 high quality bases) assembled on 2006-10-13
> BS13325.5prime
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGGCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATTCCTCGTGGACGGATGTGGGTCCACCTACCCGGAC
BS13325.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2071-PA | 780 | Ser6-RA | 1..723 | 17..739 | 3565 | 99.7 | Plus |
CG1304-PA | 783 | CG1304-RA | 253..542 | 269..558 | 1150 | 95.8 | Plus |
CG1304-PA | 783 | CG1304-RA | 85..221 | 101..237 | 460 | 93.4 | Plus |
CG1304-PA | 783 | CG1304-RA | 628..686 | 644..702 | 170 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 901 | CG2071-RA | 19..741 | 17..739 | 3585 | 99.7 | Plus |
CG1304-RA | 893 | CG1304-RA | 34..706 | 34..706 | 2110 | 87.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20962765..20963487 | 739..17 | 3585 | 99.7 | Minus |
X | 23542271 | X | 20964714..20965386 | 706..34 | 2060 | 87.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:51:17 has no hits.
BS13325.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:43 Download gff for
BS13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2071-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:48 Download gff for
BS13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..741 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:02 Download gff for
BS13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..741 | 17..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:02 Download gff for
BS13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20962765..20963487 | 17..739 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:48 Download gff for
BS13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20833792..20834514 | 17..739 | 99 | | Minus |
BS13325.complete Sequence
812 bp assembled on 2006-11-01
GenBank Submission: FJ637424
> BS13325.complete
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATTCGTCGTGGACGGATGTGGGTCCACCTACCCGGACGGATATGCCAG
GGTCTTTTACTTTAAGGACTGGATCAAAAAGCACTCTGATGTCTAAAAGC
TTTCTAGACCAT
BS13325.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 780 | CG2071-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG1304-RA | 783 | CG1304-PA | 18..737 | 34..753 | 2100 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 901 | CG2071-RA | 19..798 | 17..796 | 3900 | 100 | Plus |
CG1304-RA | 893 | CG1304-RA | 34..753 | 34..753 | 2100 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20962708..20963487 | 796..17 | 3900 | 100 | Minus |
X | 23542271 | X | 20964667..20965386 | 753..34 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:14:14 has no hits.
BS13325.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:43 Download gff for
BS13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:29 Download gff for
BS13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 15..801 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:53 Download gff for
BS13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..796 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:44 Download gff for
BS13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 15..801 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:02 Download gff for
BS13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..796 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:02 Download gff for
BS13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20962710..20963487 | 17..794 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:53 Download gff for
BS13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20833737..20834514 | 17..794 | 100 | | Minus |
BS13325.pep Sequence
Translation from 16 to 795
> BS13325.pep
MTFGKVAILLCSFLLFLVLPVQSAPGKLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILTRTYILTAAHCVSNEDVNHVITPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTVDT
PADVDVVISGWGRIKHQGDLPRYLQYNTLKSITRQQCEELIDFGFEGELC
LLHQVDNGACNGDSGGPAVYNNQLVGVAGFVVDGCGSTYPDGYARVFYFK
DWIKKHSDV*
BS13325.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-PA | 259 | CG2071-PA | 1..259 | 1..259 | 1361 | 100 | Plus |
CG1304-PA | 260 | CG1304-PA | 5..259 | 5..259 | 1127 | 82.7 | Plus |
CG9676-PA | 251 | CG9676-PA | 27..251 | 31..259 | 508 | 46.1 | Plus |
CG32523-PA | 262 | CG32523-PA | 11..256 | 8..253 | 452 | 42.2 | Plus |
CG4653-PA | 254 | CG4653-PA | 37..253 | 44..257 | 422 | 41.2 | Plus |