Clone BS13325 Report

Search the DGRC for BS13325

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptSer6-RA
Protein status:BS13325.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13325.3prime Sequence

750 bp (727 high quality bases) assembled on 2006-10-13

> BS13325.3prime
ATGGTCTAGAAAGCTTTTAGACATCAGAGTGCTTTTTGATCCAGTCCTTA
AAGTAAAAGACCCTGGCATATCCGTCCGGGTAGGTGGACCCACATCCGTC
CACGACGAATCCGGCCACGCCCACCAGTTGGTTGTTATATACGGCCGGGC
CACCGGAATCGCCATTGCAAGCACCATTGTCCACCTGGTGGAGCAGGCAC
AGCTCGCCCTCAAATCCGAAATCGATCAGCTCCTCACACTGCTGCCTGGT
TATCGACTTTAGGGTGTTGTACTGCAGATAGCGTGGCAAGTCTCCCTGGT
GTTTGATCCTTCCCCATCCGGAAATTACGACATCTACATCCGCTGGCGTA
TCCACAGTGGGTAGATCGATGGGCTGAATGCTCGCGGACAGAATCAGTGG
GCTCTCTAGTCGCAGCAGAGCAACGTCGTTAAGGAAGTTACCATACTCCT
CGTGGACAATTACCTCGGCCACCTGGACAAGGACTCCACCGCTGAATCGA
TCGTTTGAGCCCGCTCGAATGGTGAAACGCTCCGCAGCGATTGGCGTAAT
CACATGATTCACGTCCTCGTTGGAGACACAATGGGCGGCGGTTAAGATGT
AGGTTCTGGTCAGAATTGAACCTCCACAGCTGTGGGAACCGGCGTTCCTC
AGGGAGACCTGGTGGGGAAACTGATTTTTTCACCGCATCCTCACCGCCCA
CCACTCGACCGTTCAGTTTACCAGGCGCCGACTGTACGGGCAGCACCAAG

BS13325.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2071-PA 780 Ser6-RA 118..780 679..17 3315 100 Minus
CG1304-PA 783 CG1304-RA 253..542 544..255 1150 95.8 Minus
CG2071-PA 780 Ser6-RA 48..122 750..676 375 100 Minus
CG1304-PA 783 CG1304-RA 118..221 679..576 320 92.3 Minus
CG1304-PA 783 CG1304-RA 628..692 169..105 200 92.3 Minus
CG1304-PA 783 CG1304-RA 85..122 713..676 165 97.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 901 CG2071-RA 66..798 750..17 3645 99.9 Minus
CG1304-RA 893 CG1304-RA 72..753 742..60 2075 87.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20962708..20963440 17..750 3620 99.9 Plus
X 23542271 X 20964667..20965348 60..742 1985 87 Plus
Blast to na_te.dros performed on 2015-02-10 15:56:53 has no hits.

BS13325.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:43 Download gff for BS13325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2071-PA 48..780 17..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:32 Download gff for BS13325.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 66..805 9..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:27 Download gff for BS13325.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 66..805 9..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:27 Download gff for BS13325.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20962701..20963440 9..750 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:32 Download gff for BS13325.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20833728..20834467 9..750 99   Plus

BS13325.5prime Sequence

739 bp (703 high quality bases) assembled on 2006-10-13

> BS13325.5prime
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGGCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATTCCTCGTGGACGGATGTGGGTCCACCTACCCGGAC

BS13325.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2071-PA 780 Ser6-RA 1..723 17..739 3565 99.7 Plus
CG1304-PA 783 CG1304-RA 253..542 269..558 1150 95.8 Plus
CG1304-PA 783 CG1304-RA 85..221 101..237 460 93.4 Plus
CG1304-PA 783 CG1304-RA 628..686 644..702 170 91.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 901 CG2071-RA 19..741 17..739 3585 99.7 Plus
CG1304-RA 893 CG1304-RA 34..706 34..706 2110 87.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20962765..20963487 739..17 3585 99.7 Minus
X 23542271 X 20964714..20965386 706..34 2060 87.7 Minus
Blast to na_te.dros performed on 2015-02-12 03:51:17 has no hits.

BS13325.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:43 Download gff for BS13325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2071-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:48 Download gff for BS13325.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..741 17..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:02 Download gff for BS13325.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..741 17..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:02 Download gff for BS13325.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20962765..20963487 17..739 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:48 Download gff for BS13325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20833792..20834514 17..739 99   Minus

BS13325.complete Sequence

812 bp assembled on 2006-11-01

GenBank Submission: FJ637424

> BS13325.complete
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATTCGTCGTGGACGGATGTGGGTCCACCTACCCGGACGGATATGCCAG
GGTCTTTTACTTTAAGGACTGGATCAAAAAGCACTCTGATGTCTAAAAGC
TTTCTAGACCAT

BS13325.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 780 CG2071-PA 1..780 17..796 3900 100 Plus
CG1304-RA 783 CG1304-PA 18..737 34..753 2100 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 901 CG2071-RA 19..798 17..796 3900 100 Plus
CG1304-RA 893 CG1304-RA 34..753 34..753 2100 86.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20962708..20963487 796..17 3900 100 Minus
X 23542271 X 20964667..20965386 753..34 2100 86.7 Minus
Blast to na_te.dros performed on 2014-11-27 16:14:14 has no hits.

BS13325.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:43 Download gff for BS13325.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:29 Download gff for BS13325.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 15..801 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:53 Download gff for BS13325.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..796 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:44 Download gff for BS13325.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 15..801 17..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:02 Download gff for BS13325.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..796 17..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:02 Download gff for BS13325.complete
Subject Subject Range Query Range Percent Splice Strand
X 20962710..20963487 17..794 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:53 Download gff for BS13325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20833737..20834514 17..794 100   Minus

BS13325.pep Sequence

Translation from 16 to 795

> BS13325.pep
MTFGKVAILLCSFLLFLVLPVQSAPGKLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILTRTYILTAAHCVSNEDVNHVITPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTVDT
PADVDVVISGWGRIKHQGDLPRYLQYNTLKSITRQQCEELIDFGFEGELC
LLHQVDNGACNGDSGGPAVYNNQLVGVAGFVVDGCGSTYPDGYARVFYFK
DWIKKHSDV*

BS13325.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-PA 259 CG2071-PA 1..259 1..259 1361 100 Plus
CG1304-PA 260 CG1304-PA 5..259 5..259 1127 82.7 Plus
CG9676-PA 251 CG9676-PA 27..251 31..259 508 46.1 Plus
CG32523-PA 262 CG32523-PA 11..256 8..253 452 42.2 Plus
CG4653-PA 254 CG4653-PA 37..253 44..257 422 41.2 Plus