Clone Sequence Records
BS13332.complete Sequence
2234 bp assembled on 2010-06-25
GenBank Submission: KX806376
> BS13332.complete
GAAGTTATCAGTCGACATGGAAGGCTTCGACGATGCGGGTGTGTTCTTTT
CGGACAATTTCGGCGGAGATAACCAGCAGGATGCGCAAATCAACTTGCAG
GCGGTAAAGAAGAAGTACAAGGAGTTCATCCGGACATTTAACGAGGAGAA
CTTTTTCTACAAATACCGTGACACCCTGAAGAGGAACTATCTTAATGGTC
GCTACTTCTTGGAGATTGAGATGGAGGATTTGGTGGGCTTCGATGAGACC
TTGGCTGACAAGCTGAACAAGCAGCCGACGGAGCATTTGGAAATCTTCGA
GGAGGCTGCCCGGGAGGTAGCCGACGAGATCACAGCTCCCCGGCCGGAGC
ACGAGGAACATATGCACGACATCCAGATTCTTCTGAGCTCCAATGCGAAT
CCCACCAACATACGACAGTTGAAGTCGGACTGCGTATCCAAGCTGGTTAA
GATCGCCGGAATCATTGTCGCAGCCTCAGGAATAAGTGCCAAGGCTACGC
GGATGTCTATCCAATGCCTGTCCTGCAGCACGGTCATACCGAATCTCAAA
GTGAATCCAGGTTTGGAGGGCTACGCCCTACCCAGGAAGTGCAACACGGA
GCAGGCGGGCAGACCCAAGTGCCCGCTGGACCCCTTCTTCATCATGCCGG
ACAAGTGCAAGTGCGTCGATTTCCAGACCCTTAAGTTGCAAGAGCTCCCC
GACTTTGTGCCACAGGGTGAGATTCCCCGCCACTTGCAGCTCTTCTGCGA
TCGCTCGCTCTGTGAACGCGTGGTGCCCGGCAATCGCGTGCTTATCCAGG
GCATATACTCCATTCGCAAGGTGGGCAAACCCTCGCGTCGGGATGGTCGC
GAGAAAGCCGTCGTTGGAGTCCGTGCTCCTTACATGAGGGTGGTGGGCAT
CACCGTCGACTCAGAGGGTGCGGGTGCCATCTCCCGATACAGCAACATCA
CATCCGATGAGGAGGAGCACTTCCGGCGAATGGCCGCCTCTGGGGACATC
TACGAACGTCTCTCACAGTCACTGGCGCCCAGCATCTTCGGCTCTCGGGA
TATCAAGAAAGCTATAACTTGTATGCTTTTTGGCGGGTCTCGTAAGCGTT
TACCGGATGGTCTGTGCCGTCGAGGCGACATTAACGTCTTACTGCTGGGA
GATCCTGGTACTGCCAAGTCACAGTTGTTAAAGTTTGTGGAGAAGGTGGC
ACCCATAGCAGTCTACACTTCGGGCAAAGGCTCCAGTGCGGCTGGTCTCA
CGGCTTCGGTTATGAAGGATCCTCAAACGCGTAACTTTGTCATGGAGGGT
GGAGCCATGGTGCTGGCCGATGGAGGCGTGGTTTGTATTGATGAGTTCGA
CAAAATGCGAGAGGATGATCGTGTGGCCATTCACGAGGCCATGGAACAGC
AGACAATATCCATTGCCAAAGCCGGCATCACGACCACCTTGAACTCACGC
TGTTCGGTCTTGGCAGCTGCCAACTCCATTTTCGGTCGATGGGACGACAC
CAAGGGCGAGGAGAACATTGACTTTATGCCCACAATTCTCTCCCGTTTCG
ACATGATTTTCATTGTAAAGGATATTCACGATGAGTCGCGGGACATTACG
CTGGCCAAGCACATCATCAACGTGCATCTGAGCTCTAACAAGTCAGCGCC
TTCAGAGCCGGCTGAGGGTGAGATATCGCTGTCGACGTTCAAGAAGTATA
TTCACTACTGCCGAACTCATTGCGGTCCGCGCCTGAGCGAAGCTGCCGGC
GAGAAGCTAAAGAGCCGCTACGTGCTTATGCGCAGTGGAGCCGGCCAGCA
GGAGAAGGCATCTGACAAGCGGCTAAGCATTCCCATCACTGTGCGTCAGT
TGGAGGCTGTCATCCGCATTTCGGAGTCGCTGGCAAAGATTCGTTTGCAA
CCGTTCGCCACAGATGAGCACGTGAACGAAGCACTTCGACTTTTCCAAGT
GTCTACCCTTGATGCTGCGATGACTGGCAGCTTGGCTGGAGCCGAAGGAT
TCACGACCGAGGAGGACCAGGAAACACTCAACCGCATCGAAAAGCAATTG
AAACGTCGCTTTGCAATTGGATCTCAAGTATCGGAGCAGAATATCTTACA
GGACTTTTTGCGTCAGAAATACGAAGAACGCACGGTAATGAAGGTAATTC
ATACCATGATCCGACGTGGAGAGCTGCAGCACCGGATGCAACGGAAGATG
CTCTATCGAATTTGCTAAAAGCTTTCTAGACCAT
BS13332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm5-RA | 2202 | CG4082-PA | 1..2202 | 17..2218 | 11010 | 100 | Plus |
| Mcm7-RA | 2163 | CG4978-PA | 1330..1463 | 1337..1470 | 235 | 78.4 | Plus |
| Mcm6-RA | 2454 | CG4039-PA | 1387..1430 | 1373..1416 | 190 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm5-RA | 2452 | CG4082-RA | 142..2344 | 17..2219 | 11015 | 100 | Plus |
| Mcm7-RA | 2451 | CG4978-RA | 1483..1616 | 1337..1470 | 235 | 78.4 | Plus |
| Mcm6-RA | 2790 | CG4039-RA | 1506..1549 | 1373..1416 | 190 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10788870..10789981 | 168..1279 | 5560 | 100 | Plus |
| 3R | 32079331 | 3R | 10790039..10790862 | 1279..2102 | 4120 | 100 | Plus |
| 3R | 32079331 | 3R | 10788665..10788816 | 17..168 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 10790923..10791042 | 2100..2219 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 8893280..8893413 | 1337..1470 | 235 | 78.4 | Plus |
| X | 23542271 | X | 6675892..6675935 | 1373..1416 | 190 | 95.5 | Plus |
Blast to na_te.dros performed 2014-11-28 08:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1755..1793 | 114..152 | 114 | 76.9 | Plus |
BS13332.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:40 Download gff for
BS13332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 138..2337 | 17..2216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:30 Download gff for
BS13332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 142..2341 | 17..2216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:59 Download gff for
BS13332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 142..2341 | 17..2216 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:59 Download gff for
BS13332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10788665..10788816 | 17..168 | 100 | -> | Plus |
| 3R | 10788871..10789981 | 169..1279 | 100 | -> | Plus |
| 3R | 10790040..10790861 | 1280..2101 | 100 | -> | Plus |
| 3R | 10790925..10791039 | 2102..2216 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:30 Download gff for
BS13332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6614387..6614538 | 17..168 | 100 | -> | Plus |
| arm_3R | 6614593..6615703 | 169..1279 | 100 | -> | Plus |
| arm_3R | 6615762..6616583 | 1280..2101 | 100 | -> | Plus |
| arm_3R | 6616647..6616761 | 2102..2216 | 100 | | Plus |
BS13332.5prime Sequence
563 bp (-60 high quality bases) assembled on 2010-02-21
> BS13332.5prime
TCGGACAATTTTCGGCGGAGATAACCAGCAGGATGCGCAAATCAACTTGC
AGGCGGTAAAGAAGAAGTACAAGGAGTTCATCCGGACATTTAACGAGGAG
AACTTTTTCTACAAATACCGTGACACCCTGAAGAGGAACTATCTTAATGG
TCGCTACTTCTTGGAGATTGAGATGGAGGATTTGGTGGGCTTCGATGAGA
CCTTGGCTGACAAGCTGAACAAGCAGCCGACGGAGCATTTGGAAATCTTC
GAGGAGGCTGCCCGGGAGGTAGCCGACGAGATCACAGCTCCCCGGCCGGA
GCACGATGAACATATGCACGACATCCAGATTCTTCTGAGCTCCAATGCGA
ATCCCACCAACATACGACAGTTGAAGTCGGACTGCGTATCCAAGCTGGTT
AAGATCCCCGGAATCCTTGTCGCATCCTCATGAATAAGTGGCAAGGCTAC
GCGGATGTCAATCCATTGCCTGTCCTGCACCACGGTCATACCGAATCTCA
AAGTGGAATCCAGGTTTGGAGGGCTACGCCCTACCCAGGAATTGCAACAC
GGAACAGGTGGGC
BS13332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm5-RA | 2452 | CG4082-RA | 175..735 | 1..563 | 2585 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10788870..10789312 | 120..563 | 1990 | 97.1 | Plus |
| 3R | 32079331 | 3R | 10788706..10788816 | 10..120 | 555 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 19:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1755..1793 | 66..104 | 114 | 76.9 | Plus |
BS13332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:43:14 Download gff for
BS13332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 171..731 | 1..563 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:55:32 Download gff for
BS13332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 175..735 | 1..563 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:40:47 Download gff for
BS13332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm5-RA | 175..735 | 1..563 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:40:47 Download gff for
BS13332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10788698..10788816 | 1..120 | 99 | -> | Plus |
| 3R | 10788871..10789312 | 121..563 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:55:32 Download gff for
BS13332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6614420..6614538 | 1..120 | 99 | -> | Plus |
| arm_3R | 6614593..6615034 | 121..563 | 97 | | Plus |
BS13332.pep Sequence
Translation from 16 to 2217
> BS13332.pep
MEGFDDAGVFFSDNFGGDNQQDAQINLQAVKKKYKEFIRTFNEENFFYKY
RDTLKRNYLNGRYFLEIEMEDLVGFDETLADKLNKQPTEHLEIFEEAARE
VADEITAPRPEHEEHMHDIQILLSSNANPTNIRQLKSDCVSKLVKIAGII
VAASGISAKATRMSIQCLSCSTVIPNLKVNPGLEGYALPRKCNTEQAGRP
KCPLDPFFIMPDKCKCVDFQTLKLQELPDFVPQGEIPRHLQLFCDRSLCE
RVVPGNRVLIQGIYSIRKVGKPSRRDGREKAVVGVRAPYMRVVGITVDSE
GAGAISRYSNITSDEEEHFRRMAASGDIYERLSQSLAPSIFGSRDIKKAI
TCMLFGGSRKRLPDGLCRRGDINVLLLGDPGTAKSQLLKFVEKVAPIAVY
TSGKGSSAAGLTASVMKDPQTRNFVMEGGAMVLADGGVVCIDEFDKMRED
DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSIFGRWDDTKGEEN
IDFMPTILSRFDMIFIVKDIHDESRDITLAKHIINVHLSSNKSAPSEPAE
GEISLSTFKKYIHYCRTHCGPRLSEAAGEKLKSRYVLMRSGAGQQEKASD
KRLSIPITVRQLEAVIRISESLAKIRLQPFATDEHVNEALRLFQVSTLDA
AMTGSLAGAEGFTTEEDQETLNRIEKQLKRRFAIGSQVSEQNILQDFLRQ
KYEERTVMKVIHTMIRRGELQHRMQRKMLYRIC*
BS13332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm5-PA | 733 | CG4082-PA | 1..733 | 1..733 | 3755 | 100 | Plus |
| Mcm2-PA | 887 | CG7538-PA | 180..782 | 30..650 | 878 | 34.2 | Plus |
| Mcm7-PA | 720 | CG4978-PA | 10..640 | 35..646 | 817 | 33 | Plus |
| dpa-PB | 866 | CG1616-PB | 165..781 | 31..658 | 814 | 35.3 | Plus |
| dpa-PA | 866 | CG1616-PA | 165..781 | 31..658 | 814 | 35.3 | Plus |
