Clone Sequence Records
BS13335.5prime Sequence
498 bp (476 high quality bases) assembled on 2006-10-13
> BS13335.5prime
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAACAAGTCAAGATCAAAAGCATAAAAGCTTTCTAGACC
BS13335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-PB | 468 | CG12607-RB | 1..468 | 17..484 | 2315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-RB | 691 | CG12607-RB | 103..571 | 17..485 | 2330 | 99.8 | Plus |
CG12607-RD | 794 | CG12607-RD | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RC | 1001 | CG12607-RC | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RD | 794 | CG12607-RD | 616..674 | 427..485 | 265 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4447176..4447587 | 19..430 | 2060 | 100 | Plus |
3L | 28110227 | 3L | 4447894..4447952 | 427..485 | 265 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:00:00 has no hits.
BS13335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:47 Download gff for
BS13335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-PB | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:25 Download gff for
BS13335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..575 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:20 Download gff for
BS13335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..575 | 17..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:46:20 Download gff for
BS13335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4447174..4447587 | 16..430 | 99 | -> | Plus |
3L | 4447898..4447956 | 431..488 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:25 Download gff for
BS13335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4447174..4447587 | 16..430 | 99 | -> | Plus |
arm_3L | 4447898..4447956 | 431..488 | 96 | | Plus |
BS13335.complete Sequence
500 bp assembled on 2009-08-24
GenBank Submission: KX802831
> BS13335.complete
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAAGAAGTCAAGATCAAAAGCATAAAAGCTTTCTAGACCAT
BS13335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-RB | 468 | CG12607-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
CG12607-RD | 420 | CG12607-PD | 1..414 | 17..430 | 2070 | 100 | Plus |
CG12607-RC | 447 | CG12607-PC | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-RB | 691 | CG12607-RB | 103..571 | 17..485 | 2345 | 100 | Plus |
CG12607-RD | 794 | CG12607-RD | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RC | 1001 | CG12607-RC | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RD | 794 | CG12607-RD | 616..674 | 427..485 | 280 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4447176..4447587 | 19..430 | 2060 | 100 | Plus |
3L | 28110227 | 3L | 4447894..4447952 | 427..485 | 280 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:31:47 has no hits.
BS13335.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:37 Download gff for
BS13335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 101..566 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:16 Download gff for
BS13335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..568 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:50 Download gff for
BS13335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..568 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:50 Download gff for
BS13335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4447175..4447587 | 17..430 | 99 | -> | Plus |
3L | 4447898..4447949 | 431..482 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:16 Download gff for
BS13335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4447175..4447587 | 17..430 | 99 | -> | Plus |
arm_3L | 4447898..4447949 | 431..482 | 100 | | Plus |
BS13335.pep Sequence
Translation from 16 to 483
> BS13335.pep
MKFFLLLALALVGIAAGAQLPDSATQGPNPQDIATPEPEYIDIDEPAPVA
AAPAPRPVAAAPRPVFAAPAPIARPVAHPVARPVVVAQSFVQQPVQQQIV
QRAQYVAPVAQQVVLPQQQLVGHTYNSRAGYQYRRPVYNETIKETTNKKK
SRSKA*
BS13335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-PB | 155 | CG12607-PB | 1..155 | 1..155 | 787 | 100 | Plus |
CG12607-PD | 139 | CG12607-PD | 1..139 | 1..139 | 705 | 99.3 | Plus |
CG12607-PC | 148 | CG12607-PC | 1..138 | 1..138 | 704 | 100 | Plus |