Clone BS13335 Report

Search the DGRC for BS13335

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG12607-RB
Protein status:BS13335.pep: full length peptide match
Sequenced Size:500

Clone Sequence Records

BS13335.5prime Sequence

498 bp (476 high quality bases) assembled on 2006-10-13

> BS13335.5prime
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAACAAGTCAAGATCAAAAGCATAAAAGCTTTCTAGACC

BS13335.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-PB 468 CG12607-RB 1..468 17..484 2315 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 691 CG12607-RB 103..571 17..485 2330 99.8 Plus
CG12607-RD 794 CG12607-RD 103..516 17..430 2070 100 Plus
CG12607-RC 1001 CG12607-RC 103..516 17..430 2070 100 Plus
CG12607-RD 794 CG12607-RD 616..674 427..485 265 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4447176..4447587 19..430 2060 100 Plus
3L 28110227 3L 4447894..4447952 427..485 265 96.6 Plus
Blast to na_te.dros performed on 2015-02-11 19:00:00 has no hits.

BS13335.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:47 Download gff for BS13335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-PB 1..468 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:01:25 Download gff for BS13335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..575 17..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:20 Download gff for BS13335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..575 17..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:46:20 Download gff for BS13335.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4447174..4447587 16..430 99 -> Plus
3L 4447898..4447956 431..488 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:01:25 Download gff for BS13335.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4447174..4447587 16..430 99 -> Plus
arm_3L 4447898..4447956 431..488 96   Plus

BS13335.complete Sequence

500 bp assembled on 2009-08-24

GenBank Submission: KX802831

> BS13335.complete
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAAGAAGTCAAGATCAAAAGCATAAAAGCTTTCTAGACCAT

BS13335.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 468 CG12607-PB 1..468 17..484 2340 100 Plus
CG12607-RD 420 CG12607-PD 1..414 17..430 2070 100 Plus
CG12607-RC 447 CG12607-PC 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 691 CG12607-RB 103..571 17..485 2345 100 Plus
CG12607-RD 794 CG12607-RD 103..516 17..430 2070 100 Plus
CG12607-RC 1001 CG12607-RC 103..516 17..430 2070 100 Plus
CG12607-RD 794 CG12607-RD 616..674 427..485 280 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4447176..4447587 19..430 2060 100 Plus
3L 28110227 3L 4447894..4447952 427..485 280 98.3 Plus
Blast to na_te.dros performed on 2014-11-28 01:31:47 has no hits.

BS13335.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:37 Download gff for BS13335.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 101..566 17..482 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:16 Download gff for BS13335.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..568 17..482 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:50 Download gff for BS13335.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..568 17..482 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:50 Download gff for BS13335.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4447175..4447587 17..430 99 -> Plus
3L 4447898..4447949 431..482 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:16 Download gff for BS13335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4447175..4447587 17..430 99 -> Plus
arm_3L 4447898..4447949 431..482 100   Plus

BS13335.pep Sequence

Translation from 16 to 483

> BS13335.pep
MKFFLLLALALVGIAAGAQLPDSATQGPNPQDIATPEPEYIDIDEPAPVA
AAPAPRPVAAAPRPVFAAPAPIARPVAHPVARPVVVAQSFVQQPVQQQIV
QRAQYVAPVAQQVVLPQQQLVGHTYNSRAGYQYRRPVYNETIKETTNKKK
SRSKA*

BS13335.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-PB 155 CG12607-PB 1..155 1..155 787 100 Plus
CG12607-PD 139 CG12607-PD 1..139 1..139 705 99.3 Plus
CG12607-PC 148 CG12607-PC 1..138 1..138 704 100 Plus