Clone Sequence Records
BS13338.3prime Sequence
685 bp (684 high quality bases) assembled on 2006-10-13
> BS13338.3prime
ATGGTCTAGAAAGCTTTCAACAGCATTTATTTTGGTCCAGCTTAGGGCTG
GTCGGTCTGGCCAGCAGAACCACGTTTTCCAAAGTCACATCCCTGGGAAC
ATAGAACTTAAGTTCTGCTTGATATCCGTGGGATCGTAGATGCTCCAGTC
GTCCATAATCCAGAACCCGCTTGCACTGTTGGCCAATTTGTTCGCGCTCC
TGGCGAGTTAGACGCTGCGTGTTCGTCTCGGTGAGCTGAAAGTCAGCCGA
TTCCATGGCCTTACGCCGCTCTCGGCTTAAGCCCGTGCCACAAACTGCCC
AACTGACCATTTTGGTTAGGATAACGAACTCCCGTGGTCCAATTCCAGCT
TCCTGAAGAAACTTGCGTCCCACGTAGGAGCGCCAGGAGCAGCGATGATG
ACAACACAGGGCGATGAGAACGTAGTCCGAGCTGGCATTTCCATCACCGA
GTATACATCTCAGGGTCAAGTCTGTAGCTGCTCCACAGAGGTGCTTCGAA
AAAGCCACCGTTCGTTGGGTTTTCTTTAGCTCCGGCAGAGCAGAAAGCTT
AAGATCAGCGATATCAGCACGGATACGTTGCACCACCTCCCTGTTGGCCA
ACTTGTTGTCCTTCTTGTGCCGCAGGGACATTCGATCGATGAGGACCACC
TGTGAGTGACTCAACTTCTGTTCCTGCAATACGGT
BS13338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-PA | 1326 | CG18048-RA | 658..1326 | 685..17 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1409 | CG18048-RA | 740..1408 | 685..17 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6346850..6347518 | 685..17 | 3345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:26:37 has no hits.
BS13338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:47 Download gff for
BS13338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-PA | 658..1326 | 17..685 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:59 Download gff for
BS13338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 740..1409 | 16..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:17 Download gff for
BS13338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 740..1409 | 16..685 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:17 Download gff for
BS13338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6346850..6347521 | 11..685 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:59 Download gff for
BS13338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2172572..2173243 | 11..685 | 99 | | Minus |
BS13338.5prime Sequence
748 bp (645 high quality bases) assembled on 2006-10-13
> BS13338.5prime
GAAGTTATCAGTCGACATGGAACCTGTGAAAGAGACGATGACCACTGTCA
AGGCGGAGAAGCCGGTAACCACCACTTGCTCCTACTGGGTGTTACGCAAA
AAGCGCCGCTGCAAGATGACTGCAAACAAGGGCAGTGAGTTTTGTGGAGC
CCATGCCTCATCGGCAGCCACCACTGCAACTTGCGATGAAAAAGCTAGAG
AAGATTCCTTCCAGGAACGTATTCCCTGCCCGCTTGATCACAAACATACC
GTGTTTAAAAGAAAACTAGCCAAACACTTGACCATTTGCAATGCCAGGGA
TCAGGAAAGTTCACTGCCCTACATTGTAAAAGGAGTGAATTCTGGAGACA
ATCTTAAGGAAACAGACGAAGATTTGAACAAATTCAATCAAATAAAACTG
CACGAACTGGCGGATGAAGAGTTCTACAGTCTGATCGACAAAGTTAAGAA
TCTGTATGACAAGCACATCAATTCCAGCATACAGGAACTGCAGCTGGAGC
ACGAATCCCTAAAGGAGGAACTTAGTCGCAAGGACTACGGCCAGGAAACG
CTACGCCAGCTCACCCAGACCACTAGCTTGCTGGGCATCCTGGAACACGA
TCACCAGTTGATGGATCACACGAGCTATATAGAATTCGGAGCCGGAAAGG
GACAATTGGCCTACTTTTTGGCCACCGTATTGCAGGAACAGAAGTTGAGT
CACTCACAGGTGGTCCTCATCCGATCGAATGTCCCTGCGGCACAAGAA
BS13338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-PA | 1326 | CG18048-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
| CG18048-PA | 1326 | CG18048-RA | 705..731 | 722..748 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1409 | CG18048-RA | 83..813 | 17..748 | 3635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6346193..6346923 | 17..748 | 3610 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:29 has no hits.
BS13338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:48 Download gff for
BS13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-PA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:58 Download gff for
BS13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 80..813 | 13..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:51 Download gff for
BS13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 80..813 | 13..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:51 Download gff for
BS13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6346190..6346923 | 13..748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:58 Download gff for
BS13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2171912..2172645 | 13..748 | 99 | | Plus |
BS13338.complete Sequence
1358 bp assembled on 2006-11-01
GenBank Submission: FJ637425
> BS13338.complete
GAAGTTATCAGTCGACATGGAACCTGTGAAAGAGACGATGACCACTGTCA
AGGCGGAGAAGCCGGTAACCACCACTTGCTCCTACTGGGTGTTACGCAAA
AAGCGCCGCTGCAAGATGACTGCAAACAAGGGCAGTGAGTTTTGTGGAGC
CCATGCCTCATCGGCAGCCACCACTGCAACTTGCGATGAAAAAGCTAGAG
AAGATTCCTTCCAGGAACGTATTCCCTGCCCGCTTGATCACAAACATACC
GTGTTTAAAAGAAAACTAGCCAAACACTTGACCATTTGCAATGCCAGGGA
TCAGGAAAGTTCACTGCCCTACATTGTAAAAGGAGTGAATTCTGGAGACA
ATCTTAAGGAAACAGACGAAGATTTGAACAAATTCAATCAAATAAAACTG
CACGAACTGGCGGATGAAGAGTTCTACAGTCTGATCGACAAAGTTAAGAA
TCTGTATGACAAGCACATCAATTCCAGCATACAGGAACTGCAGCTGGAGC
ACGAATCCCTAAAGGAGGAACTTAGTCGCAAGGACTACGGCCAGGAAACG
CTACGCCAGCTCACCCAGACCACTAGCTTGCTGGGCATCCTGGAACACGA
TCACCAGTTGATGGATCACACGAGCTATATAGAATTCGGAGCCGGAAAGG
GACAATTGGCCTACTTTTTGGCCACCGTATTGCAGGAACAGAAGTTGAGT
CACTCACAGGTGGTCCTCATCGATCGAATGTCCCTGCGGCACAAGAAGGA
CAACAAGTTGGCCAACAGGGAGGTGGTGCAACGTATCCGTGCTGATATCG
CTGATCTTAAGCTTTCTGCTCTGCCGGAGCTAAAGAAAACCCAACGAACG
GTGGCTTTTTCGAAGCACCTCTGTGGAGCAGCTACAGACTTGACCCTGAG
ATGTATACTCGGTGATGGAAATGCCAGCTCGGACTACGTTCTCATCGCCC
TGTGTTGTCATCATCGCTGCTCCTGGCGCTCCTACGTGGGACGCAAGTTT
CTTCAGGAAGCTGGAATTGGACCACGGGAGTTCGTTATCCTAACCAAAAT
GGTCAGTTGGGCAGTTTGTGGCACGGGCTTAAGCCGAGAGCGGCGTAAGG
CCATGGAATCGGCTGACTTTCAGCTCACCGAGACGAACACGCAGCGTCTA
ACTCGCCAGGAGCGCGAACAAATTGGCCAACAGTGCAAGCGGGTTCTGGA
TTATGGACGACTGGAGCATCTACGATCCCACGGATATCAAGCAGAACTTA
AGTTCTATGTTCCCAGGGATGTGACTTTGGAAAACGTGGTTCTGCTGGCC
AGACCGACCAGCCCTAAGCTGGACCAAAATAAATGCTGTTGAAAGCTTTC
TAGACCAT
BS13338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1326 | CG18048-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1409 | CG18048-RA | 83..1408 | 17..1342 | 6630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6346193..6347518 | 17..1342 | 6630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:09 has no hits.
BS13338.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:45 Download gff for
BS13338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 1..1326 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:30 Download gff for
BS13338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 75..1403 | 13..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:09 Download gff for
BS13338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 83..1407 | 17..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:45 Download gff for
BS13338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 75..1403 | 13..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:19 Download gff for
BS13338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 83..1407 | 17..1341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:19 Download gff for
BS13338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6346193..6347517 | 17..1341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:09 Download gff for
BS13338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2171915..2173239 | 17..1341 | 100 | | Plus |
BS13338.pep Sequence
Translation from 16 to 1341
> BS13338.pep
MEPVKETMTTVKAEKPVTTTCSYWVLRKKRRCKMTANKGSEFCGAHASSA
ATTATCDEKAREDSFQERIPCPLDHKHTVFKRKLAKHLTICNARDQESSL
PYIVKGVNSGDNLKETDEDLNKFNQIKLHELADEEFYSLIDKVKNLYDKH
INSSIQELQLEHESLKEELSRKDYGQETLRQLTQTTSLLGILEHDHQLMD
HTSYIEFGAGKGQLAYFLATVLQEQKLSHSQVVLIDRMSLRHKKDNKLAN
REVVQRIRADIADLKLSALPELKKTQRTVAFSKHLCGAATDLTLRCILGD
GNASSDYVLIALCCHHRCSWRSYVGRKFLQEAGIGPREFVILTKMVSWAV
CGTGLSRERRKAMESADFQLTETNTQRLTRQEREQIGQQCKRVLDYGRLE
HLRSHGYQAELKFYVPRDVTLENVVLLARPTSPKLDQNKCC*
BS13338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-PA | 441 | CG18048-PA | 1..441 | 1..441 | 2298 | 100 | Plus |
