Clone Sequence Records
BS13347.3prime Sequence
733 bp (696 high quality bases) assembled on 2006-10-13
> BS13347.3prime
ATGGTCTAGAAAGCTTTCACTGCTGATTCGCAATCTGAGTGTTGTCCATC
TGGGTGGTCAGCTCGGATATGCCCTCCTCCTCCTCAGAGATGAGGTCCAC
CCAGTAGCGGAGCTTCTTGCTGCGCAGGTAGCTGGCGGAGTTGTCGAAAA
CCACCGTGTAAGTGGTGTTCGGTCGTGTAGAGATGTAACCAATCTCGTCC
ATCTCGTTGGAGTACACGGTTCCCAGGGGCACCTCGCTGCGCTTCTCGCC
CGTCTTGTCGTCCACGCTGTAGATGCCGAATTTGATGTCGTAGTCAAAGG
TGCGGAACTCCCAGGAGAGGATCTTCTGCTCCTCAACGTTGACCTTAAAG
TGCAGCTTCAACTTGTCGCCCTTGGGAACCTGGGCCTCCACAAAGTCTCG
ATCGCTCTGCTGGCTACTCTGATCAATGTAAAGCTCCTCCGGCAGCTTGC
CTCCCCAGACCATCAGTGCCTTGCACTGGGGATCTCCGTTCCTGTCCACC
ATCTCGCCGCCCCAGGCCTTCGGAAATGCCTTTCGGTTCACATGGGAGAA
GAGTTGCTCCTGCCAGCGGTCCACTCCGGATTTGTAGATCACGATCTTGC
TGGTGGTGTTCTCGTCCAGGAATTTCTTAACAATGTTGAACGCCACCGAG
AAGAGCTTGGGTGCGTTGATGATGTAGCACATCTTGAGGAGCTCCGGGAA
GTTGGCCTCGTATTGCTTCACGTAAAGATCACA
BS13347.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-PA | 1224 | CG13893-RA | 520..1224 | 721..17 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 2198 | CG13893-RA | 1091..1809 | 733..16 | 3555 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 599688..600249 | 160..721 | 2810 | 100 | Plus |
3L | 28110227 | 3L | 599483..599626 | 16..159 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:54 has no hits.
BS13347.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:51 Download gff for
BS13347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-PA | 508..1224 | 17..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:00 Download gff for
BS13347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 1092..1809 | 16..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:28 Download gff for
BS13347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 1092..1809 | 16..732 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:28 Download gff for
BS13347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 599483..599626 | 16..159 | 100 | <- | Plus |
3L | 599688..600261 | 160..732 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:00 Download gff for
BS13347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 599483..599626 | 16..159 | 100 | <- | Plus |
arm_3L | 599688..600261 | 160..732 | 99 | | Plus |
BS13347.5prime Sequence
767 bp (651 high quality bases) assembled on 2006-10-13
> BS13347.5prime
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACCGCTGGCAGGAG
CAACTCTTCTCTCATGTGAACCGAAAGGCATTTCCGAAGGCCTGGGGCGG
CGAGATGGTGGAAAGGA
BS13347.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-PA | 1224 | CG13893-RA | 1..746 | 17..762 | 3705 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 2198 | CG13893-RA | 583..1335 | 15..767 | 3735 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 600018..600483 | 767..302 | 2300 | 99.6 | Minus |
3L | 28110227 | 3L | 600547..600664 | 302..185 | 590 | 100 | Minus |
3L | 28110227 | 3L | 600843..600914 | 140..69 | 360 | 100 | Minus |
3L | 28110227 | 3L | 603371..603426 | 70..15 | 280 | 100 | Minus |
3L | 28110227 | 3L | 600727..600772 | 184..139 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:44:29 has no hits.
BS13347.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:51 Download gff for
BS13347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-PA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:43 Download gff for
BS13347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 578..1334 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:40 Download gff for
BS13347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 578..1334 | 9..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:40 Download gff for
BS13347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 600019..600482 | 303..766 | 99 | <- | Minus |
3L | 600547..600664 | 185..302 | 100 | <- | Minus |
3L | 600727..600770 | 141..184 | 100 | <- | Minus |
3L | 600843..600912 | 71..140 | 100 | <- | Minus |
3L | 603371..603431 | 9..70 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:43 Download gff for
BS13347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 603371..603431 | 9..70 | 93 | | Minus |
arm_3L | 600019..600482 | 303..766 | 99 | <- | Minus |
arm_3L | 600547..600664 | 185..302 | 100 | <- | Minus |
arm_3L | 600727..600770 | 141..184 | 100 | <- | Minus |
arm_3L | 600843..600912 | 71..140 | 100 | <- | Minus |
BS13347.complete Sequence
1256 bp assembled on 2006-11-01
GenBank Submission: FJ637426
> BS13347.complete
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACCGCTGGCAGGAG
CAACTCTTCTCCCATGTGAACCGAAAGGCATTTCCGAAGGCCTGGGGCGG
CGAGATGGTGGACAGGAACGGAGATCCCCAGTGCAAGGCACTGATGGTCT
GGGGAGGCAAGCTGCCGGAGGAGCTTTACATTGATCAGAGTAGCCAGCAG
AGCGATCGAGACTTTGTGGAGGCCCAGGTTCCCAAGGGCGACAAGTTGAA
GCTGCACTTTAAGGTCAACGTTGAGGAGCAGAAGATCCTCTCCTGGGAGT
TCCGCACCTTTGACTACGACATCAAATTCGGCATCTACAGCGTGGACGAC
AAGACGGGCGAGAAGCGCAGCGAGGTGCCCCTGGGAACCGTGTACTCCAA
CGAGATGGACGAGATTGGTTACATCTCTACACGACCGAACACCACTTACA
CGGTGGTTTTCGACAACTCCGCCAGCTACCTGCGCAGCAAGAAGCTCCGC
TACTGGGTGGACCTCATCTCTGAGGAGGAGGAGGGCATATCCGAGCTGAC
CACCCAGATGGACAACACTCAGATTGCGAATCAGCAGTGAAAGCTTTCTA
GACCAT
BS13347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 1224 | CG13893-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 2198 | CG13893-RA | 583..1809 | 15..1241 | 6135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 599688..600483 | 1097..302 | 3980 | 100 | Minus |
3L | 28110227 | 3L | 599483..599626 | 1241..1098 | 720 | 100 | Minus |
3L | 28110227 | 3L | 600547..600664 | 302..185 | 590 | 100 | Minus |
3L | 28110227 | 3L | 600843..600914 | 140..69 | 360 | 100 | Minus |
3L | 28110227 | 3L | 603371..603426 | 70..15 | 280 | 100 | Minus |
3L | 28110227 | 3L | 600727..600772 | 184..139 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:10 has no hits.
BS13347.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:33 Download gff for
BS13347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 1..1224 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:18 Download gff for
BS13347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 571..1802 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:38 Download gff for
BS13347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 585..1807 | 17..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:33 Download gff for
BS13347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 571..1802 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:03 Download gff for
BS13347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 585..1807 | 17..1239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:03 Download gff for
BS13347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 599485..599626 | 1098..1239 | 100 | <- | Minus |
3L | 599688..600482 | 303..1097 | 100 | <- | Minus |
3L | 600547..600664 | 185..302 | 100 | <- | Minus |
3L | 600727..600770 | 141..184 | 100 | <- | Minus |
3L | 600843..600912 | 71..140 | 100 | <- | Minus |
3L | 603371..603424 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:38 Download gff for
BS13347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 599485..599626 | 1098..1239 | 100 | <- | Minus |
arm_3L | 599688..600482 | 303..1097 | 100 | <- | Minus |
arm_3L | 600547..600664 | 185..302 | 100 | <- | Minus |
arm_3L | 600727..600770 | 141..184 | 100 | <- | Minus |
arm_3L | 600843..600912 | 71..140 | 100 | <- | Minus |
arm_3L | 603371..603424 | 17..70 | 100 | | Minus |
BS13347.pep Sequence
Translation from 16 to 1239
> BS13347.pep
MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA
EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP
FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF
FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA
FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR
NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV
NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI
GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN
TQIANQQ*
BS13347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-PA | 407 | CG13893-PA | 1..407 | 1..407 | 2167 | 100 | Plus |
retm-PC | 659 | CG9528-PC | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PA | 659 | CG9528-PA | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PB | 707 | CG9528-PB | 214..589 | 5..357 | 276 | 22.2 | Plus |