Clone BS13347 Report

Search the DGRC for BS13347

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG13893-RA
Protein status:BS13347.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13347.3prime Sequence

733 bp (696 high quality bases) assembled on 2006-10-13

> BS13347.3prime
ATGGTCTAGAAAGCTTTCACTGCTGATTCGCAATCTGAGTGTTGTCCATC
TGGGTGGTCAGCTCGGATATGCCCTCCTCCTCCTCAGAGATGAGGTCCAC
CCAGTAGCGGAGCTTCTTGCTGCGCAGGTAGCTGGCGGAGTTGTCGAAAA
CCACCGTGTAAGTGGTGTTCGGTCGTGTAGAGATGTAACCAATCTCGTCC
ATCTCGTTGGAGTACACGGTTCCCAGGGGCACCTCGCTGCGCTTCTCGCC
CGTCTTGTCGTCCACGCTGTAGATGCCGAATTTGATGTCGTAGTCAAAGG
TGCGGAACTCCCAGGAGAGGATCTTCTGCTCCTCAACGTTGACCTTAAAG
TGCAGCTTCAACTTGTCGCCCTTGGGAACCTGGGCCTCCACAAAGTCTCG
ATCGCTCTGCTGGCTACTCTGATCAATGTAAAGCTCCTCCGGCAGCTTGC
CTCCCCAGACCATCAGTGCCTTGCACTGGGGATCTCCGTTCCTGTCCACC
ATCTCGCCGCCCCAGGCCTTCGGAAATGCCTTTCGGTTCACATGGGAGAA
GAGTTGCTCCTGCCAGCGGTCCACTCCGGATTTGTAGATCACGATCTTGC
TGGTGGTGTTCTCGTCCAGGAATTTCTTAACAATGTTGAACGCCACCGAG
AAGAGCTTGGGTGCGTTGATGATGTAGCACATCTTGAGGAGCTCCGGGAA
GTTGGCCTCGTATTGCTTCACGTAAAGATCACA

BS13347.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 1224 CG13893-RA 520..1224 721..17 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 2198 CG13893-RA 1091..1809 733..16 3555 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 599688..600249 160..721 2810 100 Plus
3L 28110227 3L 599483..599626 16..159 720 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:15:54 has no hits.

BS13347.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:51 Download gff for BS13347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-PA 508..1224 17..732 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:00 Download gff for BS13347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1092..1809 16..732 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:28 Download gff for BS13347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1092..1809 16..732 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:28 Download gff for BS13347.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 599483..599626 16..159 100 <- Plus
3L 599688..600261 160..732 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:00 Download gff for BS13347.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 599483..599626 16..159 100 <- Plus
arm_3L 599688..600261 160..732 99   Plus

BS13347.5prime Sequence

767 bp (651 high quality bases) assembled on 2006-10-13

> BS13347.5prime
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACCGCTGGCAGGAG
CAACTCTTCTCTCATGTGAACCGAAAGGCATTTCCGAAGGCCTGGGGCGG
CGAGATGGTGGAAAGGA

BS13347.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 1224 CG13893-RA 1..746 17..762 3705 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 2198 CG13893-RA 583..1335 15..767 3735 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 600018..600483 767..302 2300 99.6 Minus
3L 28110227 3L 600547..600664 302..185 590 100 Minus
3L 28110227 3L 600843..600914 140..69 360 100 Minus
3L 28110227 3L 603371..603426 70..15 280 100 Minus
3L 28110227 3L 600727..600772 184..139 230 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:44:29 has no hits.

BS13347.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:51 Download gff for BS13347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-PA 1..750 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:43 Download gff for BS13347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 578..1334 9..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:40 Download gff for BS13347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 578..1334 9..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:40 Download gff for BS13347.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 600019..600482 303..766 99 <- Minus
3L 600547..600664 185..302 100 <- Minus
3L 600727..600770 141..184 100 <- Minus
3L 600843..600912 71..140 100 <- Minus
3L 603371..603431 9..70 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:43 Download gff for BS13347.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 603371..603431 9..70 93   Minus
arm_3L 600019..600482 303..766 99 <- Minus
arm_3L 600547..600664 185..302 100 <- Minus
arm_3L 600727..600770 141..184 100 <- Minus
arm_3L 600843..600912 71..140 100 <- Minus

BS13347.complete Sequence

1256 bp assembled on 2006-11-01

GenBank Submission: FJ637426

> BS13347.complete
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACCGCTGGCAGGAG
CAACTCTTCTCCCATGTGAACCGAAAGGCATTTCCGAAGGCCTGGGGCGG
CGAGATGGTGGACAGGAACGGAGATCCCCAGTGCAAGGCACTGATGGTCT
GGGGAGGCAAGCTGCCGGAGGAGCTTTACATTGATCAGAGTAGCCAGCAG
AGCGATCGAGACTTTGTGGAGGCCCAGGTTCCCAAGGGCGACAAGTTGAA
GCTGCACTTTAAGGTCAACGTTGAGGAGCAGAAGATCCTCTCCTGGGAGT
TCCGCACCTTTGACTACGACATCAAATTCGGCATCTACAGCGTGGACGAC
AAGACGGGCGAGAAGCGCAGCGAGGTGCCCCTGGGAACCGTGTACTCCAA
CGAGATGGACGAGATTGGTTACATCTCTACACGACCGAACACCACTTACA
CGGTGGTTTTCGACAACTCCGCCAGCTACCTGCGCAGCAAGAAGCTCCGC
TACTGGGTGGACCTCATCTCTGAGGAGGAGGAGGGCATATCCGAGCTGAC
CACCCAGATGGACAACACTCAGATTGCGAATCAGCAGTGAAAGCTTTCTA
GACCAT

BS13347.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 1224 CG13893-PA 1..1224 17..1240 6120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 2198 CG13893-RA 583..1809 15..1241 6135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 599688..600483 1097..302 3980 100 Minus
3L 28110227 3L 599483..599626 1241..1098 720 100 Minus
3L 28110227 3L 600547..600664 302..185 590 100 Minus
3L 28110227 3L 600843..600914 140..69 360 100 Minus
3L 28110227 3L 603371..603426 70..15 280 100 Minus
3L 28110227 3L 600727..600772 184..139 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:39:10 has no hits.

BS13347.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:33 Download gff for BS13347.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..1224 17..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:18 Download gff for BS13347.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 571..1802 9..1241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:38 Download gff for BS13347.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 585..1807 17..1239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:33 Download gff for BS13347.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 571..1802 9..1241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:03 Download gff for BS13347.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 585..1807 17..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:03 Download gff for BS13347.complete
Subject Subject Range Query Range Percent Splice Strand
3L 599485..599626 1098..1239 100 <- Minus
3L 599688..600482 303..1097 100 <- Minus
3L 600547..600664 185..302 100 <- Minus
3L 600727..600770 141..184 100 <- Minus
3L 600843..600912 71..140 100 <- Minus
3L 603371..603424 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:38 Download gff for BS13347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 599485..599626 1098..1239 100 <- Minus
arm_3L 599688..600482 303..1097 100 <- Minus
arm_3L 600547..600664 185..302 100 <- Minus
arm_3L 600727..600770 141..184 100 <- Minus
arm_3L 600843..600912 71..140 100 <- Minus
arm_3L 603371..603424 17..70 100   Minus

BS13347.pep Sequence

Translation from 16 to 1239

> BS13347.pep
MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA
EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP
FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF
FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA
FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR
NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV
NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI
GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN
TQIANQQ*

BS13347.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 407 CG13893-PA 1..407 1..407 2167 100 Plus
retm-PC 659 CG9528-PC 214..589 5..357 276 22.2 Plus
retm-PA 659 CG9528-PA 214..589 5..357 276 22.2 Plus
retm-PB 707 CG9528-PB 214..589 5..357 276 22.2 Plus