Clone Sequence Records
BS13350.5prime Sequence
671 bp (532 high quality bases) assembled on 2006-10-13
> BS13350.5prime
GAAGTTATCAGTCGACATGAAACAATCCAAGGACGAAGACAAGGAGGAAT
CGCCGGTTCAACCGACGACCCACAATTCCAGCGCAGGCAGCAACGGCCAC
GACGCCAAATCTCCGGTGGTCACTACTGCACCAGCGGCAACTTGTTCCGT
ATCGGTTTCGGATGCTTCGGGGGCCGGAGCTTCCGTTCGCACCACTGGAC
GGGTGAAGAAACCCAAACAGGTGTACGATCCCTCGGACAACTATGTGTCC
CGGGCCAGCAGCAACCGCAACTCTCTCTCTTCAGTCCCGGCCACCTCCAA
TGTCCAGTCACCGCCAGTCAAGGAGGCCACCGATTCGCAGGACTCCACAA
CCAGTCCTGTTTCGGAGCAGCAGCAGCAGCAGCTACAGCAAGCGGCTCAA
CTTCGCAACTTCGACACGTGCCAGAAGTGTGGCAAAAGCGAACCCAAGCG
CGGATCTGGCCATAAGAGCAACTTCCTCACTTGCAAGGGCTGCATGCAGA
AATGGCACTTCCCCTGCTTGCCGATCACGTTCCACAACCAGAGCACAGCC
CGCAAGAAGTTCAAGTGCGACAAGTGTCGCTACTGCCGGTTATGCAACGT
GAGGGGGGCCAGGTCTTTCCATTTGCAGTTTATGCGTGGATGCCTATCAC
CCGGACTGCAATGATCCCACT
BS13350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2662-PA | 1341 | CG2662-RA | 1..654 | 17..671 | 3235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2662-RB | 1765 | CG2662-RB | 87..740 | 17..671 | 3250 | 99.8 | Plus |
CG2662-RA | 1645 | CG2662-RA | 87..740 | 17..671 | 3250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2699042..2699339 | 207..504 | 1490 | 100 | Plus |
X | 23542271 | X | 2698787..2698978 | 17..208 | 960 | 100 | Plus |
X | 23542271 | X | 2699842..2700008 | 504..671 | 790 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:27:22 has no hits.
BS13350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:53 Download gff for
BS13350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2662-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:36 Download gff for
BS13350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2662-RA | 81..740 | 11..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:02:26 Download gff for
BS13350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2662-RA | 81..740 | 11..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:02:26 Download gff for
BS13350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2699842..2700008 | 504..671 | 99 | | Plus |
X | 2698781..2698978 | 11..208 | 98 | -> | Plus |
X | 2699044..2699338 | 209..503 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:36 Download gff for
BS13350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2592814..2593011 | 11..208 | 98 | -> | Plus |
arm_X | 2593077..2593371 | 209..503 | 100 | -> | Plus |
arm_X | 2593875..2594041 | 504..671 | 99 | | Plus |
BS13350.complete Sequence
1373 bp assembled on 2010-05-13
GenBank Submission: KX806267
> BS13350.complete
GAAGTTATCAGTCGACATGAAACAATCCAAGGACGAAGACAAGGAGGAAT
CGCCGGTTCAACCGACGACCCACAATTCCAGCGCAGGCAGCAACGGCCAC
GACGCCAAATCTCCGGTGGTCACTACTGCACCAGCGGCAACTTGTTCCGT
ATCGGTTTCGGATGCTTCGGGGGCCGGAGCTTCCGTTCGCACCACTGGAC
GGGTGAAGAAACCCAAACAGGTGTACGATCCCTCGGACAACTATGTGTCC
CGGGCCAGCAGCAACCGCAACTCTCTCTCTTCAGTCCCGGCCACCTCCAA
TGTCCAGTCACCGCCAGTCAAGGAGGCCACCGATTCGCAGGACTCCACAA
CCAGTCCTGTTTCGGAGCAGCAGCAGCAGCAGCTACAGCAAGCGGCTCAA
CTTCGCAACTTCGACACGTGCCAGAAGTGTGGCAAAAGCGAACCCAAGCG
CGGATCTGGCCATAAGAGCAACTTCCTCACTTGCAAGGGCTGCATGCAGA
AATGGCACTTCCCCTGCTTGCCGATCACGTTCCACAACCAGAGCACAGCC
CGCAAGAAGTTCAAGTGCGACAAGTGTCGCTACTGCCGGTTATGCAACGT
GAGGGGGCCAGGTCTTTCCATTTGCAGTTTATGCGTGGATGCCTATCACC
CGGACTGCAATGATCCCACTCTCAAGCAGAGCAAAGCCGTCGAGGCCAAT
CCCAATTGGAGATGCTTCCGATGCGAGGCGTGTAACATCGGCGGCAGCAC
GAGTGCATCCAGCGAGGAGCAAACGGGGGCCAGGAAATCCACTGCGAGCC
GCGAGGACCAGGCCCAGCCGGTGGTGCCGAGGAAGTCGAATGCGGGTCGC
AAGAAGCGCGTCCAATCGGAGCCCACCGGGCAAGAAAAGGCAGCGAAGAT
TGAGAAGCTAGCCAAACGTAGACAGCCCTTGAAAACAGAAAAGAAGAAAG
AGTACAAAAAGGAGGAGGATGAGGAGCCGGCACAAATAAAAGTCAAGGTG
GAGAAGGTCGAGCCGGTAGATATGGAGACTGAGCAGATTGAGAATAACGA
TCTGCCTGGGCCAGAACAGGAATCGCTTTCCTTACGCCTAACGCCAATCA
CAGCTGTAGAGAGAAGAAGCCATCCAGTATCAACCTGGTCCGTGGAACAG
GTCGTCCAATTTGTTGCCAAGCGCTATCCGAAGGAGGCGAACGTGTTCCG
CTACCAGGACATTGATGGCGCCTCCCTGCTGCTGCTCAATCGCCACGATG
TGATGAACGGATTCGGTTTGAAGCTGGGACCGGCGCTGCGCGTCTTCGAA
CTCGTGATGTCCCTGCAGACTCAATCCAATGACGTTGGCCTCGCCTGGCT
AGATTAGAAGCTTTCTAGACCAT
BS13350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2662-RB | 1341 | CG2662-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
CG2662-RA | 1341 | CG2662-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2662-RB | 1765 | CG2662-RB | 87..1427 | 17..1357 | 6705 | 100 | Plus |
CG2662-RA | 1645 | CG2662-RA | 87..1427 | 17..1357 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2699842..2700695 | 504..1357 | 4270 | 100 | Plus |
X | 23542271 | X | 2699042..2699339 | 207..504 | 1490 | 100 | Plus |
X | 23542271 | X | 2698787..2698978 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 929..981 | 707..655 | 112 | 67.9 | Minus |
BS13350.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:10 Download gff for
BS13350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2662-RA | 84..1424 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:25 Download gff for
BS13350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2662-RA | 87..1427 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:43 Download gff for
BS13350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2662-RA | 87..1427 | 17..1357 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:43 Download gff for
BS13350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2698787..2698978 | 17..208 | 100 | -> | Plus |
X | 2699044..2699338 | 209..503 | 100 | -> | Plus |
X | 2699842..2700695 | 504..1357 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:25 Download gff for
BS13350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2592820..2593011 | 17..208 | 100 | -> | Plus |
arm_X | 2593077..2593371 | 209..503 | 100 | -> | Plus |
arm_X | 2593875..2594728 | 504..1357 | 100 | | Plus |
BS13350.pep Sequence
Translation from 16 to 1356
> BS13350.pep
MKQSKDEDKEESPVQPTTHNSSAGSNGHDAKSPVVTTAPAATCSVSVSDA
SGAGASVRTTGRVKKPKQVYDPSDNYVSRASSNRNSLSSVPATSNVQSPP
VKEATDSQDSTTSPVSEQQQQQLQQAAQLRNFDTCQKCGKSEPKRGSGHK
SNFLTCKGCMQKWHFPCLPITFHNQSTARKKFKCDKCRYCRLCNVRGPGL
SICSLCVDAYHPDCNDPTLKQSKAVEANPNWRCFRCEACNIGGSTSASSE
EQTGARKSTASREDQAQPVVPRKSNAGRKKRVQSEPTGQEKAAKIEKLAK
RRQPLKTEKKKEYKKEEDEEPAQIKVKVEKVEPVDMETEQIENNDLPGPE
QESLSLRLTPITAVERRSHPVSTWSVEQVVQFVAKRYPKEANVFRYQDID
GASLLLLNRHDVMNGFGLKLGPALRVFELVMSLQTQSNDVGLAWLD*
BS13350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2662-PB | 446 | CG2662-PB | 1..446 | 1..446 | 2341 | 100 | Plus |
CG2662-PA | 446 | CG2662-PA | 1..446 | 1..446 | 2341 | 100 | Plus |