Clone BS13350 Report

Search the DGRC for BS13350

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG2662-RA
Protein status:BS13350.pep: full length peptide match
Sequenced Size:1373

Clone Sequence Records

BS13350.5prime Sequence

671 bp (532 high quality bases) assembled on 2006-10-13

> BS13350.5prime
GAAGTTATCAGTCGACATGAAACAATCCAAGGACGAAGACAAGGAGGAAT
CGCCGGTTCAACCGACGACCCACAATTCCAGCGCAGGCAGCAACGGCCAC
GACGCCAAATCTCCGGTGGTCACTACTGCACCAGCGGCAACTTGTTCCGT
ATCGGTTTCGGATGCTTCGGGGGCCGGAGCTTCCGTTCGCACCACTGGAC
GGGTGAAGAAACCCAAACAGGTGTACGATCCCTCGGACAACTATGTGTCC
CGGGCCAGCAGCAACCGCAACTCTCTCTCTTCAGTCCCGGCCACCTCCAA
TGTCCAGTCACCGCCAGTCAAGGAGGCCACCGATTCGCAGGACTCCACAA
CCAGTCCTGTTTCGGAGCAGCAGCAGCAGCAGCTACAGCAAGCGGCTCAA
CTTCGCAACTTCGACACGTGCCAGAAGTGTGGCAAAAGCGAACCCAAGCG
CGGATCTGGCCATAAGAGCAACTTCCTCACTTGCAAGGGCTGCATGCAGA
AATGGCACTTCCCCTGCTTGCCGATCACGTTCCACAACCAGAGCACAGCC
CGCAAGAAGTTCAAGTGCGACAAGTGTCGCTACTGCCGGTTATGCAACGT
GAGGGGGGCCAGGTCTTTCCATTTGCAGTTTATGCGTGGATGCCTATCAC
CCGGACTGCAATGATCCCACT

BS13350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-PA 1341 CG2662-RA 1..654 17..671 3235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-RB 1765 CG2662-RB 87..740 17..671 3250 99.8 Plus
CG2662-RA 1645 CG2662-RA 87..740 17..671 3250 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2699042..2699339 207..504 1490 100 Plus
X 23542271 X 2698787..2698978 17..208 960 100 Plus
X 23542271 X 2699842..2700008 504..671 790 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 18:27:22 has no hits.

BS13350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:39:53 Download gff for BS13350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2662-PA 1..654 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:36 Download gff for BS13350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 81..740 11..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:02:26 Download gff for BS13350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 81..740 11..671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:02:26 Download gff for BS13350.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2699842..2700008 504..671 99   Plus
X 2698781..2698978 11..208 98 -> Plus
X 2699044..2699338 209..503 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:36 Download gff for BS13350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2592814..2593011 11..208 98 -> Plus
arm_X 2593077..2593371 209..503 100 -> Plus
arm_X 2593875..2594041 504..671 99   Plus

BS13350.complete Sequence

1373 bp assembled on 2010-05-13

GenBank Submission: KX806267

> BS13350.complete
GAAGTTATCAGTCGACATGAAACAATCCAAGGACGAAGACAAGGAGGAAT
CGCCGGTTCAACCGACGACCCACAATTCCAGCGCAGGCAGCAACGGCCAC
GACGCCAAATCTCCGGTGGTCACTACTGCACCAGCGGCAACTTGTTCCGT
ATCGGTTTCGGATGCTTCGGGGGCCGGAGCTTCCGTTCGCACCACTGGAC
GGGTGAAGAAACCCAAACAGGTGTACGATCCCTCGGACAACTATGTGTCC
CGGGCCAGCAGCAACCGCAACTCTCTCTCTTCAGTCCCGGCCACCTCCAA
TGTCCAGTCACCGCCAGTCAAGGAGGCCACCGATTCGCAGGACTCCACAA
CCAGTCCTGTTTCGGAGCAGCAGCAGCAGCAGCTACAGCAAGCGGCTCAA
CTTCGCAACTTCGACACGTGCCAGAAGTGTGGCAAAAGCGAACCCAAGCG
CGGATCTGGCCATAAGAGCAACTTCCTCACTTGCAAGGGCTGCATGCAGA
AATGGCACTTCCCCTGCTTGCCGATCACGTTCCACAACCAGAGCACAGCC
CGCAAGAAGTTCAAGTGCGACAAGTGTCGCTACTGCCGGTTATGCAACGT
GAGGGGGCCAGGTCTTTCCATTTGCAGTTTATGCGTGGATGCCTATCACC
CGGACTGCAATGATCCCACTCTCAAGCAGAGCAAAGCCGTCGAGGCCAAT
CCCAATTGGAGATGCTTCCGATGCGAGGCGTGTAACATCGGCGGCAGCAC
GAGTGCATCCAGCGAGGAGCAAACGGGGGCCAGGAAATCCACTGCGAGCC
GCGAGGACCAGGCCCAGCCGGTGGTGCCGAGGAAGTCGAATGCGGGTCGC
AAGAAGCGCGTCCAATCGGAGCCCACCGGGCAAGAAAAGGCAGCGAAGAT
TGAGAAGCTAGCCAAACGTAGACAGCCCTTGAAAACAGAAAAGAAGAAAG
AGTACAAAAAGGAGGAGGATGAGGAGCCGGCACAAATAAAAGTCAAGGTG
GAGAAGGTCGAGCCGGTAGATATGGAGACTGAGCAGATTGAGAATAACGA
TCTGCCTGGGCCAGAACAGGAATCGCTTTCCTTACGCCTAACGCCAATCA
CAGCTGTAGAGAGAAGAAGCCATCCAGTATCAACCTGGTCCGTGGAACAG
GTCGTCCAATTTGTTGCCAAGCGCTATCCGAAGGAGGCGAACGTGTTCCG
CTACCAGGACATTGATGGCGCCTCCCTGCTGCTGCTCAATCGCCACGATG
TGATGAACGGATTCGGTTTGAAGCTGGGACCGGCGCTGCGCGTCTTCGAA
CTCGTGATGTCCCTGCAGACTCAATCCAATGACGTTGGCCTCGCCTGGCT
AGATTAGAAGCTTTCTAGACCAT

BS13350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-RB 1341 CG2662-PB 1..1341 17..1357 6705 100 Plus
CG2662-RA 1341 CG2662-PA 1..1341 17..1357 6705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-RB 1765 CG2662-RB 87..1427 17..1357 6705 100 Plus
CG2662-RA 1645 CG2662-RA 87..1427 17..1357 6705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2699842..2700695 504..1357 4270 100 Plus
X 23542271 X 2699042..2699339 207..504 1490 100 Plus
X 23542271 X 2698787..2698978 17..208 960 100 Plus
Blast to na_te.dros performed 2014-11-28 02:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 929..981 707..655 112 67.9 Minus

BS13350.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:10 Download gff for BS13350.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 84..1424 17..1357 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:25 Download gff for BS13350.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 87..1427 17..1357 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:43 Download gff for BS13350.complete
Subject Subject Range Query Range Percent Splice Strand
CG2662-RA 87..1427 17..1357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:43 Download gff for BS13350.complete
Subject Subject Range Query Range Percent Splice Strand
X 2698787..2698978 17..208 100 -> Plus
X 2699044..2699338 209..503 100 -> Plus
X 2699842..2700695 504..1357 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:25 Download gff for BS13350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2592820..2593011 17..208 100 -> Plus
arm_X 2593077..2593371 209..503 100 -> Plus
arm_X 2593875..2594728 504..1357 100   Plus

BS13350.pep Sequence

Translation from 16 to 1356

> BS13350.pep
MKQSKDEDKEESPVQPTTHNSSAGSNGHDAKSPVVTTAPAATCSVSVSDA
SGAGASVRTTGRVKKPKQVYDPSDNYVSRASSNRNSLSSVPATSNVQSPP
VKEATDSQDSTTSPVSEQQQQQLQQAAQLRNFDTCQKCGKSEPKRGSGHK
SNFLTCKGCMQKWHFPCLPITFHNQSTARKKFKCDKCRYCRLCNVRGPGL
SICSLCVDAYHPDCNDPTLKQSKAVEANPNWRCFRCEACNIGGSTSASSE
EQTGARKSTASREDQAQPVVPRKSNAGRKKRVQSEPTGQEKAAKIEKLAK
RRQPLKTEKKKEYKKEEDEEPAQIKVKVEKVEPVDMETEQIENNDLPGPE
QESLSLRLTPITAVERRSHPVSTWSVEQVVQFVAKRYPKEANVFRYQDID
GASLLLLNRHDVMNGFGLKLGPALRVFELVMSLQTQSNDVGLAWLD*

BS13350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2662-PB 446 CG2662-PB 1..446 1..446 2341 100 Plus
CG2662-PA 446 CG2662-PA 1..446 1..446 2341 100 Plus