Clone BS13363 Report

Search the DGRC for BS13363

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG1124-RA
Protein status:BS13363.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13363.3prime Sequence

533 bp (525 high quality bases) assembled on 2006-10-13

> BS13363.3prime
ATGGTCTAGAAAGCTTCTAGTCCACGTAGAATTGCTCTACAGGAACATTC
TTCAGGAGCTGGTTGGCGAGTTTGCCGAACTCGCTAGCCAATTTTTTCTG
CAATTGAGCCTGCATAGCCTCCAAAACGACTTGAGAGTTTTCCCGCAGAA
ACAGATTGGTGGCCTCCAGCAGAATTCGATTGTTGTTGAAGGCACCTGAG
ATGCTCATTTTCACATCCTTCACATCCAGAACCAAGCTGAGAGCATCGAT
GTGGAGGTAGTTAGCGCCCTTGAAGGCGTGAATGGATGTCTTTCCTGTGA
GATCGGCACTCACACCCTCGAAGTTAGCATGGAAGTCCCCACCTCCGGAG
GCGGGCAGGATCAGCAGGACCCCGGAGCTCGTGTATTTAGCCTCAATCTT
TAGCTTGGGCATCACGATCTTCGCCTTGAAGGGCTCGCTTCCTTCGCTCA
GTTTCAGGGATGTCACCTTGAAGTTGCTGGCCCCGAAGGCCTCCATGTTC
TTCAGCGTGATCTTATACCCCTGGGGACCCTCT

BS13363.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-PA 741 CG1124-RA 225..741 533..17 2585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 1116 CG1124-RA 364..880 533..17 2585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4967671..4968035 533..169 1825 100 Minus
3R 32079331 3R 4968098..4968249 168..17 760 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:43:14 has no hits.

BS13363.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:00 Download gff for BS13363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-PA 225..741 17..533 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:55 Download gff for BS13363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 364..885 10..533 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:03 Download gff for BS13363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 364..885 10..533 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:03 Download gff for BS13363.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4967671..4968035 169..533 100 -> Minus
3R 4968098..4968254 10..168 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:55 Download gff for BS13363.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 793393..793757 169..533 100 -> Minus
arm_3R 793820..793976 10..168 98   Minus

BS13363.5prime Sequence

554 bp (465 high quality bases) assembled on 2006-10-13

> BS13363.5prime
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGA

BS13363.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-PA 741 CG1124-RA 1..538 17..554 2690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 1116 CG1124-RA 140..677 17..554 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4967618..4967984 188..554 1835 100 Plus
3R 32079331 3R 4967129..4967238 81..190 550 100 Plus
3R 32079331 3R 4965584..4965647 17..80 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:51:44 has no hits.

BS13363.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:01 Download gff for BS13363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:58 Download gff for BS13363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 134..676 10..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:03 Download gff for BS13363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 134..676 10..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:03 Download gff for BS13363.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4967621..4967983 191..553 100   Plus
3R 4965578..4965647 10..80 97 -> Plus
3R 4967129..4967238 81..190 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:58 Download gff for BS13363.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 791300..791369 10..80 97 -> Plus
arm_3R 792851..792960 81..190 100 -> Plus
arm_3R 793343..793705 191..553 100   Plus

BS13363.complete Sequence

773 bp assembled on 2006-11-01

GenBank Submission: FJ637427

> BS13363.complete
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGAAGGATGTGAAAATGAGCATCTCAGGTGCCTTCAACAACAATCGAAT
TCTGCTGGAGGCCACCAATCTGTTTCTGCGGGAAAACTCTCAAGTCGTTT
TGGAGGCTATGCAGGCTCAATTGCAGAAAAAATTGGCTAGCGAGTTCGGC
AAACTCGCCAACCAGCTCCTGAAGAATGTTCCTGTAGAGCAATTCTACGT
GGACTAGAAGCTTTCTAGACCAT

BS13363.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 741 CG1124-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 1116 CG1124-RA 140..880 17..757 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4967618..4968035 188..605 2090 100 Plus
3R 32079331 3R 4968098..4968249 606..757 760 100 Plus
3R 32079331 3R 4967129..4967238 81..190 550 100 Plus
3R 32079331 3R 4965584..4965647 17..80 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:43:01 has no hits.

BS13363.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:34 Download gff for BS13363.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:19 Download gff for BS13363.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 132..883 10..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:25 Download gff for BS13363.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 140..880 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:35 Download gff for BS13363.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 132..883 10..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:20 Download gff for BS13363.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 140..880 17..757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:20 Download gff for BS13363.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4965584..4965647 17..80 100 -> Plus
3R 4967129..4967238 81..190 100 -> Plus
3R 4967621..4968035 191..605 100 -> Plus
3R 4968098..4968249 606..757 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:25 Download gff for BS13363.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 793820..793971 606..757 100   Plus
arm_3R 791306..791369 17..80 100 -> Plus
arm_3R 792851..792960 81..190 100 -> Plus
arm_3R 793343..793757 191..605 100 -> Plus

BS13363.pep Sequence

Translation from 16 to 756

> BS13363.pep
MNKAVCLVIVIQALRMVQAETPPYIKQCHRNDPKLVDCFIGAIEHLKPYL
ANGIPDIQLPSVEPFKMDTLALQLTEGPQGYKITLKNMEAFGASNFKVTS
LKLSEGSEPFKAKIVMPKLKIEAKYTSSGVLLILPASGGGDFHANFEGVS
ADLTGKTSIHAFKGANYLHIDALSLVLDVKDVKMSISGAFNNNRILLEAT
NLFLRENSQVVLEAMQAQLQKKLASEFGKLANQLLKNVPVEQFYVD*

BS13363.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-PA 246 CG1124-PA 1..246 1..246 1243 100 Plus
CG2016-PD 249 CG2016-PD 4..245 3..243 370 29.8 Plus
CG2016-PB 249 CG2016-PB 4..245 3..243 370 29.8 Plus
CG2016-PE 254 CG2016-PE 4..250 3..243 360 29.6 Plus
CG14661-PB 246 CG14661-PB 12..244 5..244 318 28.3 Plus