Clone Sequence Records
BS13363.3prime Sequence
533 bp (525 high quality bases) assembled on 2006-10-13
> BS13363.3prime
ATGGTCTAGAAAGCTTCTAGTCCACGTAGAATTGCTCTACAGGAACATTC
TTCAGGAGCTGGTTGGCGAGTTTGCCGAACTCGCTAGCCAATTTTTTCTG
CAATTGAGCCTGCATAGCCTCCAAAACGACTTGAGAGTTTTCCCGCAGAA
ACAGATTGGTGGCCTCCAGCAGAATTCGATTGTTGTTGAAGGCACCTGAG
ATGCTCATTTTCACATCCTTCACATCCAGAACCAAGCTGAGAGCATCGAT
GTGGAGGTAGTTAGCGCCCTTGAAGGCGTGAATGGATGTCTTTCCTGTGA
GATCGGCACTCACACCCTCGAAGTTAGCATGGAAGTCCCCACCTCCGGAG
GCGGGCAGGATCAGCAGGACCCCGGAGCTCGTGTATTTAGCCTCAATCTT
TAGCTTGGGCATCACGATCTTCGCCTTGAAGGGCTCGCTTCCTTCGCTCA
GTTTCAGGGATGTCACCTTGAAGTTGCTGGCCCCGAAGGCCTCCATGTTC
TTCAGCGTGATCTTATACCCCTGGGGACCCTCT
BS13363.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-PA | 741 | CG1124-RA | 225..741 | 533..17 | 2585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 1116 | CG1124-RA | 364..880 | 533..17 | 2585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4967671..4968035 | 533..169 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 4968098..4968249 | 168..17 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:43:14 has no hits.
BS13363.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:00 Download gff for
BS13363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-PA | 225..741 | 17..533 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:55 Download gff for
BS13363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 364..885 | 10..533 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:03 Download gff for
BS13363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 364..885 | 10..533 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:03 Download gff for
BS13363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4967671..4968035 | 169..533 | 100 | -> | Minus |
3R | 4968098..4968254 | 10..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:55 Download gff for
BS13363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 793393..793757 | 169..533 | 100 | -> | Minus |
arm_3R | 793820..793976 | 10..168 | 98 | | Minus |
BS13363.5prime Sequence
554 bp (465 high quality bases) assembled on 2006-10-13
> BS13363.5prime
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGA
BS13363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-PA | 741 | CG1124-RA | 1..538 | 17..554 | 2690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 1116 | CG1124-RA | 140..677 | 17..554 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4967618..4967984 | 188..554 | 1835 | 100 | Plus |
3R | 32079331 | 3R | 4967129..4967238 | 81..190 | 550 | 100 | Plus |
3R | 32079331 | 3R | 4965584..4965647 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:44 has no hits.
BS13363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:01 Download gff for
BS13363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:58 Download gff for
BS13363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 134..676 | 10..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:03 Download gff for
BS13363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 134..676 | 10..553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:03 Download gff for
BS13363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4967621..4967983 | 191..553 | 100 | | Plus |
3R | 4965578..4965647 | 10..80 | 97 | -> | Plus |
3R | 4967129..4967238 | 81..190 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:58 Download gff for
BS13363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 791300..791369 | 10..80 | 97 | -> | Plus |
arm_3R | 792851..792960 | 81..190 | 100 | -> | Plus |
arm_3R | 793343..793705 | 191..553 | 100 | | Plus |
BS13363.complete Sequence
773 bp assembled on 2006-11-01
GenBank Submission: FJ637427
> BS13363.complete
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGAAGGATGTGAAAATGAGCATCTCAGGTGCCTTCAACAACAATCGAAT
TCTGCTGGAGGCCACCAATCTGTTTCTGCGGGAAAACTCTCAAGTCGTTT
TGGAGGCTATGCAGGCTCAATTGCAGAAAAAATTGGCTAGCGAGTTCGGC
AAACTCGCCAACCAGCTCCTGAAGAATGTTCCTGTAGAGCAATTCTACGT
GGACTAGAAGCTTTCTAGACCAT
BS13363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 741 | CG1124-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 1116 | CG1124-RA | 140..880 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4967618..4968035 | 188..605 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 4968098..4968249 | 606..757 | 760 | 100 | Plus |
3R | 32079331 | 3R | 4967129..4967238 | 81..190 | 550 | 100 | Plus |
3R | 32079331 | 3R | 4965584..4965647 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:43:01 has no hits.
BS13363.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:34 Download gff for
BS13363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:19 Download gff for
BS13363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 132..883 | 10..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:25 Download gff for
BS13363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 140..880 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:35 Download gff for
BS13363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 132..883 | 10..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:20 Download gff for
BS13363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 140..880 | 17..757 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:20 Download gff for
BS13363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4965584..4965647 | 17..80 | 100 | -> | Plus |
3R | 4967129..4967238 | 81..190 | 100 | -> | Plus |
3R | 4967621..4968035 | 191..605 | 100 | -> | Plus |
3R | 4968098..4968249 | 606..757 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:25 Download gff for
BS13363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 793820..793971 | 606..757 | 100 | | Plus |
arm_3R | 791306..791369 | 17..80 | 100 | -> | Plus |
arm_3R | 792851..792960 | 81..190 | 100 | -> | Plus |
arm_3R | 793343..793757 | 191..605 | 100 | -> | Plus |
BS13363.pep Sequence
Translation from 16 to 756
> BS13363.pep
MNKAVCLVIVIQALRMVQAETPPYIKQCHRNDPKLVDCFIGAIEHLKPYL
ANGIPDIQLPSVEPFKMDTLALQLTEGPQGYKITLKNMEAFGASNFKVTS
LKLSEGSEPFKAKIVMPKLKIEAKYTSSGVLLILPASGGGDFHANFEGVS
ADLTGKTSIHAFKGANYLHIDALSLVLDVKDVKMSISGAFNNNRILLEAT
NLFLRENSQVVLEAMQAQLQKKLASEFGKLANQLLKNVPVEQFYVD*
BS13363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-PA | 246 | CG1124-PA | 1..246 | 1..246 | 1243 | 100 | Plus |
CG2016-PD | 249 | CG2016-PD | 4..245 | 3..243 | 370 | 29.8 | Plus |
CG2016-PB | 249 | CG2016-PB | 4..245 | 3..243 | 370 | 29.8 | Plus |
CG2016-PE | 254 | CG2016-PE | 4..250 | 3..243 | 360 | 29.6 | Plus |
CG14661-PB | 246 | CG14661-PB | 12..244 | 5..244 | 318 | 28.3 | Plus |