Clone BS13366 Report

Search the DGRC for BS13366

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG14234-RA
Protein status:BS13366.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13366.3prime Sequence

661 bp (634 high quality bases) assembled on 2006-10-13

> BS13366.3prime
ATGGTCTAGAAAGCTTTTATCCAATGTCACGGACGATCTCGATCTTGTCG
CACAGCTCCGAGTCCGGATCGTGGATGGTGGTGAAGTGCGTGCGGTCGCT
CCGGAACGTGTTTCGTTCGTTTGAGCTGCTCTTTATCGATCTCTCCGACG
GCGTCTCCGTGCCGCTCAGCTGGATGCGCTTCTGCAGAGCCGACACGAAG
TTCTGCGATATGATGTCACCACGGGCCGTGCGCACCTGGTACAGATAGCG
GAACTTGCGCTGCCTGGCCTCCTCGCGCGTCTCCCGGGTGCGGGATTGGG
ATCGCCGGACGGGAGCGATGCCGTGGTTGGGTCCCGCCTGCTGCTGGCTG
TGCGGCAGATGGGCGCCGTGCGCGTGGCCAGGATGGTTGTGATGCCGCAT
GTACACCCGCTTGCGGTGATCCACGCGCCAGGCGGTAATGAAGCACTGCA
CCATGATGCTGAGCACAATGGTGACGGGCCAGGCGGCGATCAGGAGGCCA
CCGTAGCAAGGTGGCGGCGAGGGATGCGGCCGCATGCCGATTATCCAATT
GATGGTCTCCAGACCGTGCGTGAAGAAGTCGATGGCGCTGAGGATCATGG
CCGTGCCCACAATGCTGGAGGTGAGAATGGTCACGTACTTCACGCAGCAC
AAGGTCAGCAC

BS13366.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 1146 CG14234-RA 502..1146 661..17 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 3638 CG14234-RA 921..1565 661..17 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19737701..19738043 545..203 1715 100 Minus
X 23542271 X 19738194..19738383 206..17 950 100 Minus
X 23542271 X 19737472..19737588 661..545 585 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:08:02 has no hits.

BS13366.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:02 Download gff for BS13366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-PA 502..1146 17..661 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:37 Download gff for BS13366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 921..1565 17..661 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:11 Download gff for BS13366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 921..1565 17..661 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:11 Download gff for BS13366.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19737472..19737588 545..661 100 -> Minus
X 19737702..19738043 203..544 100 -> Minus
X 19738198..19738383 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:37 Download gff for BS13366.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19631505..19631621 545..661 100 -> Minus
arm_X 19631735..19632076 203..544 100 -> Minus
arm_X 19632231..19632416 17..202 100   Minus

BS13366.5prime Sequence

760 bp (704 high quality bases) assembled on 2006-10-13

> BS13366.5prime
GAAGTTATCAGTCGACATGAGGGTGGCGGCGGACATGGTGTATGACTACG
GCAGCGAGGACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATC
AAGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCT
GGCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGC
TACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTG
GTGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCT
GGGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCG
CGGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTT
GCCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTT
TCCGGACAACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTG
GAGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACC
ATTCTCACCTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGA
CTTCTTCACGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGC
CGCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGG
CCCGTCACCATTGTGCTCAGCATCATGGTGCAGTGCTTCATTACCGCCTG
GCGCGTGGAT

BS13366.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 1146 CG14234-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 3638 CG14234-RA 420..1163 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19736994..19737361 102..469 1840 100 Plus
X 23542271 X 19737423..19737588 469..634 830 100 Plus
X 23542271 X 19737701..19737827 634..760 635 100 Plus
X 23542271 X 19735989..19736076 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:28:13 has no hits.

BS13366.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:02 Download gff for BS13366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-PA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:55 Download gff for BS13366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 411..1163 8..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:42 Download gff for BS13366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 411..1163 8..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:42 Download gff for BS13366.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19735994..19736075 22..103 100 -> Plus
X 19736996..19737361 104..469 100 -> Plus
X 19737424..19737588 470..634 100 -> Plus
X 19737702..19737827 635..760 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:55 Download gff for BS13366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19630027..19630108 22..103 100 -> Plus
arm_X 19631029..19631394 104..469 100 -> Plus
arm_X 19631457..19631621 470..634 100 -> Plus
arm_X 19631735..19631860 635..760 100   Plus

BS13366.complete Sequence

1178 bp assembled on 2006-11-01

GenBank Submission: FJ637428

> BS13366.complete
GAAGTTATCAGTCGACATGAGGGTGGCGGCGGACATGGTGTATGACTACG
GCAGCGAGGACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATC
AAGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCT
GGCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGC
TACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTG
GTGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCT
GGGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCG
CGGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTT
GCCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTT
TCCGGACAACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTG
GAGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACC
ATTCTCACCTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGA
CTTCTTCACGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGC
CGCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGG
CCCGTCACCATTGTGCTCAGCATCATGGTGCAGTGCTTCATTACCGCCTG
GCGCGTGGATCACCGCAAGCGGGTGTACATGCGGCATCACAACCATCCTG
GCCACGCGCACGGCGCCCATCTGCCGCACAGCCAGCAGCAGGCGGGACCC
AACCACGGCATCGCTCCCGTCCGGCGATCCCAATCCCGCACCCGGGAGAC
GCGCGAGGAGGCCAGGCAGCGCAAGTTCCGCTATCTGTACCAGGTGCGCA
CGGCCCGTGGTGACATCATATCGCAGAACTTCGTGTCGGCTCTGCAGAAG
CGCATCCAGCTGAGCGGCACGGAGACGCCGTCGGAGAGATCGATAAAGAG
CAGCTCAAACGAACGAAACACGTTCCGGAGCGACCGCACGCACTTCACCA
CCATCCACGATCCGGACTCGGAGCTGTGCGACAAGATCGAGATCGTCCGT
GACATTGGATAAAAGCTTTCTAGACCAT

BS13366.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 1146 CG14234-PA 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 3638 CG14234-RA 420..1565 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19736994..19737361 102..469 1840 100 Plus
X 23542271 X 19737701..19738043 634..976 1715 100 Plus
X 23542271 X 19738194..19738383 973..1162 950 100 Plus
X 23542271 X 19737423..19737588 469..634 830 100 Plus
X 23542271 X 19735989..19736076 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:39 has no hits.

BS13366.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:36 Download gff for BS13366.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..1146 17..1162 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:21 Download gff for BS13366.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 407..1561 8..1162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:21 Download gff for BS13366.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 420..1563 17..1160 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:36 Download gff for BS13366.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 407..1561 8..1162 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:35 Download gff for BS13366.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 420..1563 17..1160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:35 Download gff for BS13366.complete
Subject Subject Range Query Range Percent Splice Strand
X 19735989..19736075 17..103 100 -> Plus
X 19736996..19737361 104..469 100 -> Plus
X 19737424..19737588 470..634 100 -> Plus
X 19737702..19738043 635..976 100 -> Plus
X 19738198..19738381 977..1160 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:21 Download gff for BS13366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19630022..19630108 17..103 100 -> Plus
arm_X 19631029..19631394 104..469 100 -> Plus
arm_X 19631457..19631621 470..634 100 -> Plus
arm_X 19631735..19632076 635..976 100 -> Plus
arm_X 19632231..19632414 977..1160 100   Plus

BS13366.pep Sequence

Translation from 16 to 1161

> BS13366.pep
MRVAADMVYDYGSEDSMSTTHLDWPFLIKGILEGQTCTPTAPEPLAAILW
AIFAVFGIVYALLGYRCLRAVGFLSGLLVGANGIFILQDFQITFLGKPAD
SALAIVAGLLGAVLGSTYPVASVLISAFAGALLSGAAMAVCVATFPDNEF
GYREIYVAVVGGAVICSVLTLCCVKYVTILTSSIVGTAMILSAIDFFTHG
LETINWIIGMRPHPSPPPCYGGLLIAAWPVTIVLSIMVQCFITAWRVDHR
KRVYMRHHNHPGHAHGAHLPHSQQQAGPNHGIAPVRRSQSRTRETREEAR
QRKFRYLYQVRTARGDIISQNFVSALQKRIQLSGTETPSERSIKSSSNER
NTFRSDRTHFTTIHDPDSELCDKIEIVRDIG*

BS13366.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 381 CG14234-PA 1..381 1..381 1986 100 Plus