Clone Sequence Records
BS13368.3prime Sequence
429 bp (429 high quality bases) assembled on 2006-10-13
> BS13368.3prime
ATGGTCTAGAAAGCTTTTAACCCCAAAGGGCGGAATATGGAGTACGGGGC
AGGAAGCGACTGCCTCCAGGACCGATGTATGGATCGGGATTTATAACTCT
TCGAATGTCCGAGTAAGTGCGTCCTTTGCGGTTTCCAGAAGGCTTGCGTC
CTCCTTTGGAGTATGAGTAAGAGGAGTGGCCTGAGTAAGCTGGGTAAGAG
TAGGAATTATATGCGGGATAGTTGTAACCATATCCTCCAGCATAGCTTCC
ATAGCCGTAGTTTCCCTGACCGTAGCCTCCATAGTCTTGTACTCCACTAT
ATCCAGTATATCCTTTTCCCGTCTTCCAGGACTTGAAGAACAGAGCGCCA
CTCGAATCCAGGCAGCACGCAATCAGCAATGTTAGGATAGTCAATCGGGA
ATCGCGGGATCTCATGTCGACTGATAACT
BS13368.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-PA | 399 | CG13640-RA | 1..399 | 415..17 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 507 | CG13640-RA | 35..433 | 415..17 | 1995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24861733..24862131 | 17..415 | 1995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:07:46 has no hits.
BS13368.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:04 Download gff for
BS13368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-PA | 1..399 | 17..415 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:41 Download gff for
BS13368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..438 | 11..422 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:19 Download gff for
BS13368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..438 | 11..422 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:19 Download gff for
BS13368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24861728..24862137 | 11..422 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:41 Download gff for
BS13368.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20687450..20687859 | 11..422 | 98 | | Plus |
BS13368.5prime Sequence
429 bp (429 high quality bases) assembled on 2006-10-13
> BS13368.5prime
GAAGTTATCAGTCGACATGAGATCCCGCGATTCCCGATTGACTATCCTAA
CATTGCTGATTGCGTGCTGCCTGGATTCGAGTGGCGCTCTGTTCTTCAAG
TCCTGGAAGACGGGAAAAGGATATACTGGATATAGTGGAGTACAAGACTA
TGGAGGCTACGGTCAGGGAAACTACGGCTATGGAAGCTATGCTGGAGGAT
ATGGTTACAACTATCCCGCATATAATTCCTACTCTTACCCAGCTTACTCA
GGCCACTCCTCTTACTCATACTCCAAAGGAGGACGCAAGCCTTCTGGAAA
CCGCAAAGGACGCACTTACTCGGACATTCGAAGAGTTATAAATCCCGATC
CATACATCGGTCCTGGAGGCAGTCGCTTCCTGCCCCGTACTCCATATTCC
GCCCTTTGGGGTTAAAAGCTTTCTAGACC
BS13368.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-PA | 399 | CG13640-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 507 | CG13640-RA | 35..433 | 17..415 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24861733..24862131 | 415..17 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:25 has no hits.
BS13368.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:04 Download gff for
BS13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:53 Download gff for
BS13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..438 | 10..421 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:41 Download gff for
BS13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..438 | 10..421 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:41 Download gff for
BS13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24861728..24862137 | 10..421 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:53 Download gff for
BS13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20687450..20687859 | 10..421 | 98 | | Minus |
BS13368.complete Sequence
431 bp assembled on 2006-11-01
GenBank Submission: FJ637429
> BS13368.complete
GAAGTTATCAGTCGACATGAGATCCCGCGATTCCCGATTGACTATCCTAA
CATTGCTGATTGCGTGCTGCCTGGATTCGAGTGGCGCTCTGTTCTTCAAG
TCCTGGAAGACGGGAAAAGGATATACTGGATATAGTGGAGTACAAGACTA
TGGAGGCTACGGTCAGGGAAACTACGGCTATGGAAGCTATGCTGGAGGAT
ATGGTTACAACTATCCCGCATATAATTCCTACTCTTACCCAGCTTACTCA
GGCCACTCCTCTTACTCATACTCCAAAGGAGGACGCAAGCCTTCTGGAAA
CCGCAAAGGACGCACTTACTCGGACATTCGAAGAGTTATAAATCCCGATC
CATACATCGGTCCTGGAGGCAGTCGCTTCCTGCCCCGTACTCCATATTCC
GCCCTTTGGGGTTAAAAGCTTTCTAGACCAT
BS13368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 399 | CG13640-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 507 | CG13640-RA | 35..433 | 17..415 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24861733..24862131 | 415..17 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:38:15 has no hits.
BS13368.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:37 Download gff for
BS13368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:22 Download gff for
BS13368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 26..435 | 10..421 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:42 Download gff for
BS13368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 35..431 | 17..413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:37 Download gff for
BS13368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 26..435 | 10..421 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:39 Download gff for
BS13368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 35..431 | 17..413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:39 Download gff for
BS13368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24861735..24862131 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:42 Download gff for
BS13368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20687457..20687853 | 17..413 | 100 | | Minus |
BS13368.pep Sequence
Translation from 16 to 414
> BS13368.pep
MRSRDSRLTILTLLIACCLDSSGALFFKSWKTGKGYTGYSGVQDYGGYGQ
GNYGYGSYAGGYGYNYPAYNSYSYPAYSGHSSYSYSKGGRKPSGNRKGRT
YSDIRRVINPDPYIGPGGSRFLPRTPYSALWG*
BS13368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-PA | 132 | CG13640-PA | 1..132 | 1..132 | 734 | 100 | Plus |
