Clone Sequence Records
BS13369.3prime Sequence
711 bp (697 high quality bases) assembled on 2006-10-13
> BS13369.3prime
ATGGTCTAGAAAGCTTCTAACCGTCCAGCTCGCCGGCAGCGCATGCATCG
GCGTAACTCTTGCCGCTCTTGTCCTCCGGATTCAGCTTGATCATGTCGTC
AATACGCAAAATGGTAATGGCGGCCTCCGTGGCGAACTTCAGCGACTTGA
TCTTGGACATGGCGGGCTCCAAAACTCCAGCCTTCTTGTTGTCCCTTACC
ACTCCCTCGATCAGATCCAGACCGGTCCACTTAAGATCCGAACGCTCGGG
CTTCGTCTGGCTGGAGTTGTGGTAGGAGCGGAGCTTGGCCACTAGATCAG
TGGCATCCTTGGCCGCGTTCACGGACAGAGTCTTGGGAATGACCAGCAGC
GACTTTGCGAATTCGGCAATGGCCAGCTGTTCGCGGGAAGCCAGCGAGGT
GGCAAAGTTCTCCAGGTAGATCGACAAAGCAGCCTCCACACAGCCGCCGC
CGGCTACAACCTTCTTGCTCTCCAGCACACGCTTCACCACGCACAGAGCG
TCGTGGACGGAGCGCTCCATCTCATCACAGTAGAAGTCATTGGGACCACG
CAAGATAATGGATGCGGCAGCACGTGCCTTAGTGCCCTTGATGAGGATAA
GTTCATCATCGCAGATGCGCTCCTGGGCCACCTCTGCGGCCTCTCCCACC
ATTGAGGCATCGAAGCTCTCCTCACCGTCCATGTTGGTCAGCGAGGTAAT
AAAGGCGGCGC
BS13369.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5374-PB | 1674 | T-cp1-RB | 980..1674 | 711..17 | 3475 | 100 | Minus |
CG5374-PA | 1674 | T-cp1-RA | 980..1674 | 711..17 | 3475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
T-cp1-RA | 1980 | CG5374-RA | 1088..1783 | 711..16 | 3480 | 100 | Minus |
T-cp1-RB | 1916 | CG5374-RB | 1024..1719 | 711..16 | 3480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22489302..22489859 | 16..573 | 2790 | 100 | Plus |
3R | 32079331 | 3R | 22489922..22490060 | 573..711 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:23:08 has no hits.
BS13369.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:04 Download gff for
BS13369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5374-PA | 980..1674 | 17..711 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:39 Download gff for
BS13369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
T-cp1-RB | 1024..1730 | 3..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:16 Download gff for
BS13369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
T-cp1-RB | 1024..1730 | 3..711 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:16 Download gff for
BS13369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22489291..22489858 | 3..572 | 99 | <- | Plus |
3R | 22489922..22490060 | 573..711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:39 Download gff for
BS13369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18315013..18315580 | 3..572 | 99 | <- | Plus |
arm_3R | 18315644..18315782 | 573..711 | 100 | | Plus |
BS13369.5prime Sequence
689 bp (679 high quality bases) assembled on 2006-10-13
> BS13369.5prime
GAAGTTATCAGTCGACATGTCGACCCTGGCCTCTCCTCTGTCCATTGCTG
GCACCCGCCAATCCGGCGCATCGGTGCGCACACAGAACGTTATGGCCGCT
CTGTCCATATCGAACATCGTGAAAAGCTCCTTGGGACCCGTGGGTCTGGA
CAAGATGCTGGTGGACGACATCGGCGATGTCACAGTGACCAACGATGGAG
CCACCATTCTGCGACTGCTGGAGGTGGAGCACCCGGCAGCCAAGGTCCTG
GTTGAGCTGGCTCAGCTGCAGGACGAGGAGGTCGGCGATGGCACTACCTC
GGTGGTTATCCTGGCCGCTGAGCTGCTGAAAAACGCCGACGAGCTGGTCA
AGCAGAAGATTCATCCTACCTCCATAATCTCCGGCTACCGCATTGCCTGC
AAGGAGGCCTGCAAGTACATCTCGGAGCATCTGACCGCTCCCGTTGATGA
GCTGGGCCGCGATTCCCTGATTAACATTGCCAAGACCTCGATGAGCTCCA
AGATCATTGGTGCTGACGCAGAGTTCTTCTCAGCCATGGTTGTGGACGCT
GCCCAGTCGGTGAAAATCACAGATCCCCGTGGGCAGGCAGCCTATTCGAT
TAAAGCCATCAATGTCCTGAAGGCCCATGGCAAGTCTGCCAGGGAATCGG
TGCTGATTCCCGGCTATGCCTTGAACTGCACAATTGCCT
BS13369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5374-PB | 1674 | T-cp1-RB | 1..673 | 17..689 | 3365 | 100 | Plus |
CG5374-PA | 1674 | T-cp1-RA | 1..673 | 17..689 | 3365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
T-cp1-RA | 1980 | CG5374-RA | 109..781 | 17..689 | 3365 | 100 | Plus |
T-cp1-RB | 1916 | CG5374-RB | 45..717 | 17..689 | 3365 | 100 | Plus |
CG7033-RA | 2121 | CG7033-RA | 270..388 | 185..303 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22490367..22490812 | 689..244 | 2230 | 100 | Minus |
3R | 32079331 | 3R | 22490867..22491022 | 244..89 | 780 | 100 | Minus |
3R | 32079331 | 3R | 22491259..22491331 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:46:49 has no hits.
BS13369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:05 Download gff for
BS13369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5374-PA | 1..673 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:39:26 Download gff for
BS13369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
T-cp1-RB | 39..717 | 10..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:14 Download gff for
BS13369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
T-cp1-RB | 39..717 | 10..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:14 Download gff for
BS13369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22490367..22490812 | 244..689 | 100 | <- | Minus |
3R | 22490868..22491021 | 90..243 | 100 | <- | Minus |
3R | 22491259..22491337 | 10..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:39:26 Download gff for
BS13369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18316089..18316534 | 244..689 | 100 | <- | Minus |
arm_3R | 18316590..18316743 | 90..243 | 100 | <- | Minus |
arm_3R | 18316981..18317059 | 10..89 | 95 | | Minus |
BS13369.complete Sequence
1706 bp assembled on 2010-05-13
GenBank Submission: KX802025
> BS13369.complete
GAAGTTATCAGTCGACATGTCGACCCTGGCCTCTCCTCTGTCCATTGCTG
GCACCCGCCAATCCGGCGCATCGGTGCGCACACAGAACGTTATGGCCGCT
CTGTCCATATCGAACATCGTGAAAAGCTCCTTGGGACCCGTGGGTCTGGA
CAAGATGCTGGTGGACGACATCGGCGATGTCACAGTGACCAACGATGGAG
CCACCATTCTGCGACTGCTGGAGGTGGAGCACCCGGCAGCCAAGGTCCTG
GTTGAGCTGGCTCAGCTGCAGGACGAGGAGGTCGGCGATGGCACTACCTC
GGTGGTTATCCTGGCCGCTGAGCTGCTGAAAAACGCCGACGAGCTGGTCA
AGCAGAAGATTCATCCTACCTCCATAATCTCCGGCTACCGCATTGCCTGC
AAGGAGGCCTGCAAGTACATCTCGGAGCATCTGACCGCTCCCGTTGATGA
GCTGGGCCGCGATTCCCTGATTAACATTGCCAAGACCTCGATGAGCTCCA
AGATCATTGGTGCTGACGCAGAGTTCTTCTCAGCCATGGTTGTGGACGCT
GCCCAGTCGGTGAAAATCACAGATCCCCGTGGGCAGGCAGCCTATTCGAT
TAAAGCCATCAATGTCCTGAAGGCCCATGGCAAGTCTGCCAGGGAATCGG
TGCTGATTCCCGGCTATGCCTTGAACTGCACAATTGCCTCCCAGCAGATG
CCCAAGAAGATTGTGAACGCCAAGATTGCCTGCCTAGACTTCTCGCTGCA
GAAGACCAAGATGAAGATGGGTGTCCAGGTCTTGATCAATGATCCCGACA
AGCTGGAGGCTATTCGTGCCCGTGAGCTGGACATTACCAAGGAGCGCATC
AACATGATCCTCGGAACCGGTGTCAATGTAGTACTGGTTAGCGGCGGCGT
TGATGATTTGTGCATGAAGTACTTCGTTGAGGCTGGAGCCATGGCTGTGC
GTCGTGTGAAGAAGAGCGATCTGAAGATCATTGCTAAGGCTACCGGCGCC
GCCTTTATTACCTCGCTGACCAACATGGACGGTGAGGAGAGCTTCGATGC
CTCAATGGTGGGAGAGGCCGCAGAGGTGGCCCAGGAGCGCATCTGCGATG
ATGAACTTATCCTCATCAAGGGCACTAAGGCACGTGCTGCCGCATCCATT
ATCTTGCGTGGTCCCAATGACTTCTACTGTGATGAGATGGAGCGCTCCGT
CCACGACGCTCTGTGCGTGGTGAAGCGTGTGCTGGAGAGCAAGAAGGTTG
TAGCCGGCGGCGGCTGTGTGGAGGCTGCTTTGTCGATCTACCTGGAGAAC
TTTGCCACCTCGCTGGCTTCCCGCGAACAGCTGGCCATTGCCGAATTCGC
AAAGTCGCTGCTGGTCATTCCCAAGACTCTGTCCGTGAACGCGGCCAAGG
ATGCCACTGATCTAGTGGCCAAGCTCCGCTCCTACCACAACTCCAGCCAG
ACGAAGCCCGAGCGTTCGGATCTTAAGTGGACCGGTCTGGATCTGATCGA
GGGAGTGGTAAGGGACAACAAGAAGGCTGGAGTTTTGGAGCCCGCCATGT
CCAAGATCAAGTCGCTGAAGTTCGCCACGGAGGCCGCCATTACCATTTTG
CGTATTGACGACATGATCAAGCTGAATCCGGAGGACAAGAGCGGCAAGAG
TTACGCCGATGCATGCGCTGCCGGCGAGCTGGACGGTTAGAAGCTTTCTA
GACCAT
BS13369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
T-cp1-RA | 1674 | CG5374-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
T-cp1-RB | 1674 | CG5374-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
T-cp1-RA | 1980 | CG5374-RA | 109..1783 | 17..1691 | 8375 | 100 | Plus |
T-cp1-RB | 1916 | CG5374-RB | 45..1719 | 17..1691 | 8375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22489922..22490812 | 1134..244 | 4455 | 100 | Minus |
3R | 32079331 | 3R | 22489302..22489859 | 1691..1134 | 2790 | 100 | Minus |
3R | 32079331 | 3R | 22490867..22491022 | 244..89 | 780 | 100 | Minus |
3R | 32079331 | 3R | 22491259..22491331 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:15:30 has no hits.
BS13369.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:45 Download gff for
BS13369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
T-cp1-RA | 101..1774 | 17..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:55 Download gff for
BS13369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
T-cp1-RB | 45..1718 | 17..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:18 Download gff for
BS13369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
T-cp1-RB | 45..1718 | 17..1690 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:18 Download gff for
BS13369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22489303..22489858 | 1135..1690 | 100 | <- | Minus |
3R | 22489922..22490812 | 244..1134 | 100 | <- | Minus |
3R | 22490868..22491021 | 90..243 | 100 | <- | Minus |
3R | 22491259..22491331 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:55 Download gff for
BS13369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18316590..18316743 | 90..243 | 100 | <- | Minus |
arm_3R | 18316981..18317053 | 17..89 | 100 | | Minus |
arm_3R | 18315025..18315580 | 1135..1690 | 100 | <- | Minus |
arm_3R | 18315644..18316534 | 244..1134 | 100 | <- | Minus |
BS13369.pep Sequence
Translation from 16 to 1689
> BS13369.pep
MSTLASPLSIAGTRQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVD
DIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILA
AELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDS
LINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAINV
LKAHGKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMK
MGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVDDLCM
KYFVEAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGE
AAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALC
VVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLV
IPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRD
NKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPEDKSGKSYADAC
AAGELDG*
BS13369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
T-cp1-PA | 557 | CG5374-PA | 1..557 | 1..557 | 2736 | 100 | Plus |
T-cp1-PB | 557 | CG5374-PB | 1..557 | 1..557 | 2736 | 100 | Plus |
Tcp-1eta-PA | 544 | CG8351-PA | 11..520 | 12..535 | 748 | 35 | Plus |
CG7033-PA | 535 | CG7033-PA | 24..525 | 21..538 | 734 | 34 | Plus |
CG5525-PA | 533 | CG5525-PA | 26..529 | 20..534 | 713 | 31.9 | Plus |