Clone BS13369 Report

Search the DGRC for BS13369

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptT-cp1-RA
Protein status:BS13369.pep: full length peptide match
Sequenced Size:1706

Clone Sequence Records

BS13369.3prime Sequence

711 bp (697 high quality bases) assembled on 2006-10-13

> BS13369.3prime
ATGGTCTAGAAAGCTTCTAACCGTCCAGCTCGCCGGCAGCGCATGCATCG
GCGTAACTCTTGCCGCTCTTGTCCTCCGGATTCAGCTTGATCATGTCGTC
AATACGCAAAATGGTAATGGCGGCCTCCGTGGCGAACTTCAGCGACTTGA
TCTTGGACATGGCGGGCTCCAAAACTCCAGCCTTCTTGTTGTCCCTTACC
ACTCCCTCGATCAGATCCAGACCGGTCCACTTAAGATCCGAACGCTCGGG
CTTCGTCTGGCTGGAGTTGTGGTAGGAGCGGAGCTTGGCCACTAGATCAG
TGGCATCCTTGGCCGCGTTCACGGACAGAGTCTTGGGAATGACCAGCAGC
GACTTTGCGAATTCGGCAATGGCCAGCTGTTCGCGGGAAGCCAGCGAGGT
GGCAAAGTTCTCCAGGTAGATCGACAAAGCAGCCTCCACACAGCCGCCGC
CGGCTACAACCTTCTTGCTCTCCAGCACACGCTTCACCACGCACAGAGCG
TCGTGGACGGAGCGCTCCATCTCATCACAGTAGAAGTCATTGGGACCACG
CAAGATAATGGATGCGGCAGCACGTGCCTTAGTGCCCTTGATGAGGATAA
GTTCATCATCGCAGATGCGCTCCTGGGCCACCTCTGCGGCCTCTCCCACC
ATTGAGGCATCGAAGCTCTCCTCACCGTCCATGTTGGTCAGCGAGGTAAT
AAAGGCGGCGC

BS13369.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5374-PB 1674 T-cp1-RB 980..1674 711..17 3475 100 Minus
CG5374-PA 1674 T-cp1-RA 980..1674 711..17 3475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
T-cp1-RA 1980 CG5374-RA 1088..1783 711..16 3480 100 Minus
T-cp1-RB 1916 CG5374-RB 1024..1719 711..16 3480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22489302..22489859 16..573 2790 100 Plus
3R 32079331 3R 22489922..22490060 573..711 695 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:23:08 has no hits.

BS13369.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:04 Download gff for BS13369.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5374-PA 980..1674 17..711 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:39 Download gff for BS13369.3prime
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 1024..1730 3..711 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:16 Download gff for BS13369.3prime
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 1024..1730 3..711 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:16 Download gff for BS13369.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22489291..22489858 3..572 99 <- Plus
3R 22489922..22490060 573..711 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:39 Download gff for BS13369.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18315013..18315580 3..572 99 <- Plus
arm_3R 18315644..18315782 573..711 100   Plus

BS13369.5prime Sequence

689 bp (679 high quality bases) assembled on 2006-10-13

> BS13369.5prime
GAAGTTATCAGTCGACATGTCGACCCTGGCCTCTCCTCTGTCCATTGCTG
GCACCCGCCAATCCGGCGCATCGGTGCGCACACAGAACGTTATGGCCGCT
CTGTCCATATCGAACATCGTGAAAAGCTCCTTGGGACCCGTGGGTCTGGA
CAAGATGCTGGTGGACGACATCGGCGATGTCACAGTGACCAACGATGGAG
CCACCATTCTGCGACTGCTGGAGGTGGAGCACCCGGCAGCCAAGGTCCTG
GTTGAGCTGGCTCAGCTGCAGGACGAGGAGGTCGGCGATGGCACTACCTC
GGTGGTTATCCTGGCCGCTGAGCTGCTGAAAAACGCCGACGAGCTGGTCA
AGCAGAAGATTCATCCTACCTCCATAATCTCCGGCTACCGCATTGCCTGC
AAGGAGGCCTGCAAGTACATCTCGGAGCATCTGACCGCTCCCGTTGATGA
GCTGGGCCGCGATTCCCTGATTAACATTGCCAAGACCTCGATGAGCTCCA
AGATCATTGGTGCTGACGCAGAGTTCTTCTCAGCCATGGTTGTGGACGCT
GCCCAGTCGGTGAAAATCACAGATCCCCGTGGGCAGGCAGCCTATTCGAT
TAAAGCCATCAATGTCCTGAAGGCCCATGGCAAGTCTGCCAGGGAATCGG
TGCTGATTCCCGGCTATGCCTTGAACTGCACAATTGCCT

BS13369.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5374-PB 1674 T-cp1-RB 1..673 17..689 3365 100 Plus
CG5374-PA 1674 T-cp1-RA 1..673 17..689 3365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
T-cp1-RA 1980 CG5374-RA 109..781 17..689 3365 100 Plus
T-cp1-RB 1916 CG5374-RB 45..717 17..689 3365 100 Plus
CG7033-RA 2121 CG7033-RA 270..388 185..303 215 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22490367..22490812 689..244 2230 100 Minus
3R 32079331 3R 22490867..22491022 244..89 780 100 Minus
3R 32079331 3R 22491259..22491331 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:46:49 has no hits.

BS13369.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:05 Download gff for BS13369.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5374-PA 1..673 17..689 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:39:26 Download gff for BS13369.5prime
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 39..717 10..689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:14 Download gff for BS13369.5prime
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 39..717 10..689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:14 Download gff for BS13369.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22490367..22490812 244..689 100 <- Minus
3R 22490868..22491021 90..243 100 <- Minus
3R 22491259..22491337 10..89 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:39:26 Download gff for BS13369.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18316089..18316534 244..689 100 <- Minus
arm_3R 18316590..18316743 90..243 100 <- Minus
arm_3R 18316981..18317059 10..89 95   Minus

BS13369.complete Sequence

1706 bp assembled on 2010-05-13

GenBank Submission: KX802025

> BS13369.complete
GAAGTTATCAGTCGACATGTCGACCCTGGCCTCTCCTCTGTCCATTGCTG
GCACCCGCCAATCCGGCGCATCGGTGCGCACACAGAACGTTATGGCCGCT
CTGTCCATATCGAACATCGTGAAAAGCTCCTTGGGACCCGTGGGTCTGGA
CAAGATGCTGGTGGACGACATCGGCGATGTCACAGTGACCAACGATGGAG
CCACCATTCTGCGACTGCTGGAGGTGGAGCACCCGGCAGCCAAGGTCCTG
GTTGAGCTGGCTCAGCTGCAGGACGAGGAGGTCGGCGATGGCACTACCTC
GGTGGTTATCCTGGCCGCTGAGCTGCTGAAAAACGCCGACGAGCTGGTCA
AGCAGAAGATTCATCCTACCTCCATAATCTCCGGCTACCGCATTGCCTGC
AAGGAGGCCTGCAAGTACATCTCGGAGCATCTGACCGCTCCCGTTGATGA
GCTGGGCCGCGATTCCCTGATTAACATTGCCAAGACCTCGATGAGCTCCA
AGATCATTGGTGCTGACGCAGAGTTCTTCTCAGCCATGGTTGTGGACGCT
GCCCAGTCGGTGAAAATCACAGATCCCCGTGGGCAGGCAGCCTATTCGAT
TAAAGCCATCAATGTCCTGAAGGCCCATGGCAAGTCTGCCAGGGAATCGG
TGCTGATTCCCGGCTATGCCTTGAACTGCACAATTGCCTCCCAGCAGATG
CCCAAGAAGATTGTGAACGCCAAGATTGCCTGCCTAGACTTCTCGCTGCA
GAAGACCAAGATGAAGATGGGTGTCCAGGTCTTGATCAATGATCCCGACA
AGCTGGAGGCTATTCGTGCCCGTGAGCTGGACATTACCAAGGAGCGCATC
AACATGATCCTCGGAACCGGTGTCAATGTAGTACTGGTTAGCGGCGGCGT
TGATGATTTGTGCATGAAGTACTTCGTTGAGGCTGGAGCCATGGCTGTGC
GTCGTGTGAAGAAGAGCGATCTGAAGATCATTGCTAAGGCTACCGGCGCC
GCCTTTATTACCTCGCTGACCAACATGGACGGTGAGGAGAGCTTCGATGC
CTCAATGGTGGGAGAGGCCGCAGAGGTGGCCCAGGAGCGCATCTGCGATG
ATGAACTTATCCTCATCAAGGGCACTAAGGCACGTGCTGCCGCATCCATT
ATCTTGCGTGGTCCCAATGACTTCTACTGTGATGAGATGGAGCGCTCCGT
CCACGACGCTCTGTGCGTGGTGAAGCGTGTGCTGGAGAGCAAGAAGGTTG
TAGCCGGCGGCGGCTGTGTGGAGGCTGCTTTGTCGATCTACCTGGAGAAC
TTTGCCACCTCGCTGGCTTCCCGCGAACAGCTGGCCATTGCCGAATTCGC
AAAGTCGCTGCTGGTCATTCCCAAGACTCTGTCCGTGAACGCGGCCAAGG
ATGCCACTGATCTAGTGGCCAAGCTCCGCTCCTACCACAACTCCAGCCAG
ACGAAGCCCGAGCGTTCGGATCTTAAGTGGACCGGTCTGGATCTGATCGA
GGGAGTGGTAAGGGACAACAAGAAGGCTGGAGTTTTGGAGCCCGCCATGT
CCAAGATCAAGTCGCTGAAGTTCGCCACGGAGGCCGCCATTACCATTTTG
CGTATTGACGACATGATCAAGCTGAATCCGGAGGACAAGAGCGGCAAGAG
TTACGCCGATGCATGCGCTGCCGGCGAGCTGGACGGTTAGAAGCTTTCTA
GACCAT

BS13369.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
T-cp1-RA 1674 CG5374-PA 1..1674 17..1690 8370 100 Plus
T-cp1-RB 1674 CG5374-PB 1..1674 17..1690 8370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
T-cp1-RA 1980 CG5374-RA 109..1783 17..1691 8375 100 Plus
T-cp1-RB 1916 CG5374-RB 45..1719 17..1691 8375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22489922..22490812 1134..244 4455 100 Minus
3R 32079331 3R 22489302..22489859 1691..1134 2790 100 Minus
3R 32079331 3R 22490867..22491022 244..89 780 100 Minus
3R 32079331 3R 22491259..22491331 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:15:30 has no hits.

BS13369.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:45 Download gff for BS13369.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RA 101..1774 17..1690 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:55 Download gff for BS13369.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 45..1718 17..1690 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:18 Download gff for BS13369.complete
Subject Subject Range Query Range Percent Splice Strand
T-cp1-RB 45..1718 17..1690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:18 Download gff for BS13369.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22489303..22489858 1135..1690 100 <- Minus
3R 22489922..22490812 244..1134 100 <- Minus
3R 22490868..22491021 90..243 100 <- Minus
3R 22491259..22491331 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:55 Download gff for BS13369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18316590..18316743 90..243 100 <- Minus
arm_3R 18316981..18317053 17..89 100   Minus
arm_3R 18315025..18315580 1135..1690 100 <- Minus
arm_3R 18315644..18316534 244..1134 100 <- Minus

BS13369.pep Sequence

Translation from 16 to 1689

> BS13369.pep
MSTLASPLSIAGTRQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVD
DIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILA
AELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDS
LINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAINV
LKAHGKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMK
MGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVDDLCM
KYFVEAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGE
AAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALC
VVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLV
IPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRD
NKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPEDKSGKSYADAC
AAGELDG*

BS13369.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
T-cp1-PA 557 CG5374-PA 1..557 1..557 2736 100 Plus
T-cp1-PB 557 CG5374-PB 1..557 1..557 2736 100 Plus
Tcp-1eta-PA 544 CG8351-PA 11..520 12..535 748 35 Plus
CG7033-PA 535 CG7033-PA 24..525 21..538 734 34 Plus
CG5525-PA 533 CG5525-PA 26..529 20..534 713 31.9 Plus