Clone Sequence Records
BS13375.3prime Sequence
626 bp (520 high quality bases) assembled on 2006-10-13
> BS13375.3prime
ATGGTCTAGAAAGCTTTTAATAATAGATTCCAGTCTCCTCCTTTATCCAT
TCCAGGTACTTGGTGACCCTAGTGAAGCCAGCCGGTCCTCCAACCTGGCA
TCCGTAAGCGGAGACGAAGGAAGTGATTCCGATAAGCTTATCACCCTCCT
TTGTGACCAGAGGACCACCAGAATCACCCTGGCAGGTGGCCTTTCCGTCC
GGAGTTTCCACACAGATGGTGTTCTCGGAGGCGGTATCAGTTCCGTAGTA
AGCCTGGCACTCCGCCACGGAGATCACTTTCAGATCCACCACTCGCAGAT
CCTCCACCACATTGCTGCCATCGTAAATGGCACCCCATCCGGCGGCCTGA
ACCCAATTGTTTTCGTAAGAGTTGTATCGGTCATCCAGGCTGGGAAGCTC
TATTTTGTTGACCAGGCTGTAGAAGTCCACATGGGGAGTCTTGATCAGGG
CCAAATCATGATCGAGTCCAACGTAGTGGGGATATCTGATGAAGTTCTCG
CTGCTCACTGTGTGGCGGAAGGCAGGTTCGTTGTAGTTGACGGCACCATA
GTACAGTGAAGCCTCATCAGCACCAGCGGTACAGTGTGCAGCAATGAGCA
CCCAAGTGTGTCCGATTATGGATCCG
BS13375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31039-PA | 819 | Jon99Ci-RA | 210..819 | 626..17 | 3000 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 907 | CG31039-RA | 225..836 | 626..15 | 3030 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29925297..29925855 | 15..573 | 2795 | 100 | Plus |
3R | 32079331 | 3R | 29925912..29925965 | 573..626 | 240 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:08:32 has no hits.
BS13375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:08 Download gff for
BS13375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31039-PA | 210..819 | 17..626 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:47 Download gff for
BS13375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 225..836 | 15..626 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:20 Download gff for
BS13375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 225..836 | 15..626 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:20 Download gff for
BS13375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29925297..29925854 | 15..572 | 100 | <- | Plus |
3R | 29925912..29925965 | 573..626 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:47 Download gff for
BS13375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25751019..25751576 | 15..572 | 100 | <- | Plus |
arm_3R | 25751634..25751687 | 573..626 | 96 | | Plus |
BS13375.5prime Sequence
626 bp (543 high quality bases) assembled on 2006-10-13
> BS13375.5prime
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCG
BS13375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31039-PA | 819 | Jon99Ci-RA | 1..610 | 17..626 | 3050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 907 | CG31039-RA | 16..625 | 17..626 | 3050 | 100 | Plus |
Jon25Bii-RB | 894 | CG8869-RB | 136..286 | 124..274 | 260 | 78.9 | Plus |
Jon25Bii-RA | 884 | CG8869-RA | 136..286 | 124..274 | 260 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29925508..29925855 | 626..279 | 1740 | 100 | Minus |
3R | 32079331 | 3R | 29925912..29926174 | 279..17 | 1315 | 100 | Minus |
2L | 23513712 | 2L | 4952851..4953001 | 274..124 | 260 | 78.1 | Minus |
3R | 32079331 | 3R | 30489091..30489233 | 129..274 | 230 | 78.8 | Plus |
3R | 32079331 | 3R | 29924348..29924494 | 274..125 | 220 | 78 | Minus |
3R | 32079331 | 3R | 29922335..29922429 | 125..219 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:59:12 has no hits.
BS13375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:09 Download gff for
BS13375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31039-PA | 1..610 | 17..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:04 Download gff for
BS13375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 7..625 | 8..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:57 Download gff for
BS13375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 7..625 | 8..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:57 Download gff for
BS13375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29925508..29925854 | 280..626 | 100 | <- | Minus |
3R | 29925912..29926183 | 8..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:04 Download gff for
BS13375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25751230..25751576 | 280..626 | 100 | <- | Minus |
arm_3R | 25751634..25751905 | 8..279 | 98 | | Minus |
BS13375.complete Sequence
851 bp assembled on 2006-11-01
GenBank Submission: FJ637430
> BS13375.complete
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTC
CGGACGGAAAGGCCACCTGCCAGGGTGATTCTGGTGGTCCTCTGGTCACA
AAGGAGGGTGATAAGCTTATCGGAATCACTTCCTTCGTCTCCGCTTACGG
ATGCCAGGTTGGAGGACCGGCTGGCTTCACTAGGGTCACCAAGTACCTGG
AATGGATAAAGGAGGAGACTGGAATCTATTATTAAAAGCTTTCTAGACCA
T
BS13375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 819 | CG31039-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Jon25Bii-RB | 831 | CG8869-PB | 114..264 | 124..274 | 260 | 78.1 | Plus |
Jon25Bii-RA | 831 | CG8869-PA | 114..264 | 124..274 | 260 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 907 | CG31039-RA | 16..836 | 17..837 | 4105 | 100 | Plus |
Jon25Bii-RB | 894 | CG8869-RB | 136..286 | 124..274 | 260 | 78.1 | Plus |
Jon25Bii-RA | 884 | CG8869-RA | 136..286 | 124..274 | 260 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29925297..29925855 | 837..279 | 2795 | 100 | Minus |
3R | 32079331 | 3R | 29925912..29926174 | 279..17 | 1315 | 100 | Minus |
2L | 23513712 | 2L | 4952851..4953001 | 274..124 | 260 | 78.1 | Minus |
3R | 32079331 | 3R | 30489091..30489233 | 129..274 | 230 | 78.8 | Plus |
3R | 32079331 | 3R | 29924348..29924494 | 274..125 | 220 | 78 | Minus |
3R | 32079331 | 3R | 29922335..29922429 | 125..219 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:26:45 has no hits.
BS13375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:38 Download gff for
BS13375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:24 Download gff for
BS13375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 3..832 | 8..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:52 Download gff for
BS13375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 16..832 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:38 Download gff for
BS13375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 3..832 | 8..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:31 Download gff for
BS13375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 16..832 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:31 Download gff for
BS13375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29925301..29925854 | 280..833 | 100 | <- | Minus |
3R | 29925912..29926174 | 17..279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:52 Download gff for
BS13375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25751023..25751576 | 280..833 | 100 | <- | Minus |
arm_3R | 25751634..25751896 | 17..279 | 100 | | Minus |
BS13375.pep Sequence
Translation from 16 to 834
> BS13375.pep
MRGLTLLSLAFLGVCSALTVPHSLVHPRDLEIRHGGIEGRITNGNLASEG
QVPYIVGVSLNSNGNWWWCGGSIIGHTWVLTAAHCTAGADEASLYYGAVN
YNEPAFRHTVSSENFIRYPHYVGLDHDLALIKTPHVDFYSLVNKIELPSL
DDRYNSYENNWVQAAGWGAIYDGSNVVEDLRVVDLKVISVAECQAYYGTD
TASENTICVETPDGKATCQGDSGGPLVTKEGDKLIGITSFVSAYGCQVGG
PAGFTRVTKYLEWIKEETGIYY*
BS13375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-PA | 272 | CG31039-PA | 1..272 | 1..272 | 1471 | 100 | Plus |
Jon99Fi-PA | 267 | CG18030-PA | 1..267 | 1..272 | 722 | 51.5 | Plus |
Jon99Fii-PA | 267 | CG2229-PA | 1..267 | 1..272 | 717 | 50.7 | Plus |
Jon66Ci-PA | 260 | CG7118-PA | 5..259 | 4..272 | 702 | 52.4 | Plus |
Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..272 | 701 | 50.7 | Plus |