Clone BS13375 Report

Search the DGRC for BS13375

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptJon99Ci-RA
Protein status:BS13375.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13375.3prime Sequence

626 bp (520 high quality bases) assembled on 2006-10-13

> BS13375.3prime
ATGGTCTAGAAAGCTTTTAATAATAGATTCCAGTCTCCTCCTTTATCCAT
TCCAGGTACTTGGTGACCCTAGTGAAGCCAGCCGGTCCTCCAACCTGGCA
TCCGTAAGCGGAGACGAAGGAAGTGATTCCGATAAGCTTATCACCCTCCT
TTGTGACCAGAGGACCACCAGAATCACCCTGGCAGGTGGCCTTTCCGTCC
GGAGTTTCCACACAGATGGTGTTCTCGGAGGCGGTATCAGTTCCGTAGTA
AGCCTGGCACTCCGCCACGGAGATCACTTTCAGATCCACCACTCGCAGAT
CCTCCACCACATTGCTGCCATCGTAAATGGCACCCCATCCGGCGGCCTGA
ACCCAATTGTTTTCGTAAGAGTTGTATCGGTCATCCAGGCTGGGAAGCTC
TATTTTGTTGACCAGGCTGTAGAAGTCCACATGGGGAGTCTTGATCAGGG
CCAAATCATGATCGAGTCCAACGTAGTGGGGATATCTGATGAAGTTCTCG
CTGCTCACTGTGTGGCGGAAGGCAGGTTCGTTGTAGTTGACGGCACCATA
GTACAGTGAAGCCTCATCAGCACCAGCGGTACAGTGTGCAGCAATGAGCA
CCCAAGTGTGTCCGATTATGGATCCG

BS13375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31039-PA 819 Jon99Ci-RA 210..819 626..17 3000 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 907 CG31039-RA 225..836 626..15 3030 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29925297..29925855 15..573 2795 100 Plus
3R 32079331 3R 29925912..29925965 573..626 240 96.3 Plus
Blast to na_te.dros performed on 2015-01-31 10:08:32 has no hits.

BS13375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:08 Download gff for BS13375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31039-PA 210..819 17..626 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:47 Download gff for BS13375.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 225..836 15..626 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:20 Download gff for BS13375.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 225..836 15..626 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:20 Download gff for BS13375.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29925297..29925854 15..572 100 <- Plus
3R 29925912..29925965 573..626 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:47 Download gff for BS13375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25751019..25751576 15..572 100 <- Plus
arm_3R 25751634..25751687 573..626 96   Plus

BS13375.5prime Sequence

626 bp (543 high quality bases) assembled on 2006-10-13

> BS13375.5prime
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCG

BS13375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31039-PA 819 Jon99Ci-RA 1..610 17..626 3050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 907 CG31039-RA 16..625 17..626 3050 100 Plus
Jon25Bii-RB 894 CG8869-RB 136..286 124..274 260 78.9 Plus
Jon25Bii-RA 884 CG8869-RA 136..286 124..274 260 78.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29925508..29925855 626..279 1740 100 Minus
3R 32079331 3R 29925912..29926174 279..17 1315 100 Minus
2L 23513712 2L 4952851..4953001 274..124 260 78.1 Minus
3R 32079331 3R 30489091..30489233 129..274 230 78.8 Plus
3R 32079331 3R 29924348..29924494 274..125 220 78 Minus
3R 32079331 3R 29922335..29922429 125..219 190 80 Plus
Blast to na_te.dros performed on 2015-02-10 15:59:12 has no hits.

BS13375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:09 Download gff for BS13375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31039-PA 1..610 17..626 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:04 Download gff for BS13375.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 7..625 8..626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:57 Download gff for BS13375.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 7..625 8..626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:57 Download gff for BS13375.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29925508..29925854 280..626 100 <- Minus
3R 29925912..29926183 8..279 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:04 Download gff for BS13375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25751230..25751576 280..626 100 <- Minus
arm_3R 25751634..25751905 8..279 98   Minus

BS13375.complete Sequence

851 bp assembled on 2006-11-01

GenBank Submission: FJ637430

> BS13375.complete
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTC
CGGACGGAAAGGCCACCTGCCAGGGTGATTCTGGTGGTCCTCTGGTCACA
AAGGAGGGTGATAAGCTTATCGGAATCACTTCCTTCGTCTCCGCTTACGG
ATGCCAGGTTGGAGGACCGGCTGGCTTCACTAGGGTCACCAAGTACCTGG
AATGGATAAAGGAGGAGACTGGAATCTATTATTAAAAGCTTTCTAGACCA
T

BS13375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 819 CG31039-PA 1..819 17..835 4095 100 Plus
Jon25Bii-RB 831 CG8869-PB 114..264 124..274 260 78.1 Plus
Jon25Bii-RA 831 CG8869-PA 114..264 124..274 260 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 907 CG31039-RA 16..836 17..837 4105 100 Plus
Jon25Bii-RB 894 CG8869-RB 136..286 124..274 260 78.1 Plus
Jon25Bii-RA 884 CG8869-RA 136..286 124..274 260 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29925297..29925855 837..279 2795 100 Minus
3R 32079331 3R 29925912..29926174 279..17 1315 100 Minus
2L 23513712 2L 4952851..4953001 274..124 260 78.1 Minus
3R 32079331 3R 30489091..30489233 129..274 230 78.8 Plus
3R 32079331 3R 29924348..29924494 274..125 220 78 Minus
3R 32079331 3R 29922335..29922429 125..219 190 80 Plus
Blast to na_te.dros performed on 2014-11-27 13:26:45 has no hits.

BS13375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:38 Download gff for BS13375.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:24 Download gff for BS13375.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 3..832 8..837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:52 Download gff for BS13375.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 16..832 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:38 Download gff for BS13375.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 3..832 8..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:31 Download gff for BS13375.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 16..832 17..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:31 Download gff for BS13375.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29925301..29925854 280..833 100 <- Minus
3R 29925912..29926174 17..279 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:52 Download gff for BS13375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25751023..25751576 280..833 100 <- Minus
arm_3R 25751634..25751896 17..279 100   Minus

BS13375.pep Sequence

Translation from 16 to 834

> BS13375.pep
MRGLTLLSLAFLGVCSALTVPHSLVHPRDLEIRHGGIEGRITNGNLASEG
QVPYIVGVSLNSNGNWWWCGGSIIGHTWVLTAAHCTAGADEASLYYGAVN
YNEPAFRHTVSSENFIRYPHYVGLDHDLALIKTPHVDFYSLVNKIELPSL
DDRYNSYENNWVQAAGWGAIYDGSNVVEDLRVVDLKVISVAECQAYYGTD
TASENTICVETPDGKATCQGDSGGPLVTKEGDKLIGITSFVSAYGCQVGG
PAGFTRVTKYLEWIKEETGIYY*

BS13375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-PA 272 CG31039-PA 1..272 1..272 1471 100 Plus
Jon99Fi-PA 267 CG18030-PA 1..267 1..272 722 51.5 Plus
Jon99Fii-PA 267 CG2229-PA 1..267 1..272 717 50.7 Plus
Jon66Ci-PA 260 CG7118-PA 5..259 4..272 702 52.4 Plus
Jon99Ciii-PB 265 CG31362-PB 1..265 1..272 701 50.7 Plus