Clone Sequence Records
BS13382.3prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS13382.3prime
ATGGTCTAGAAAGCTTCTAAATGGACGAGGTGGCATAGTCGGCCGGGAAC
TTGAACAGGTGCTTTCCAGTGGCCTGAACGGAGGGAAGGAGTCCCGCGTT
CGGAATGATGTTCCACGAGAGGTATAGCGATACGTTGCGGTTGTCCTTCA
GGCCATTCCCGTCGTCCCAGAAGTAGTACTTGGTGTTCATGTTCTTGAAG
TCCAATACGGCATTGTCGCCGCGCAGGATAATCTTGTCCCACAGTACCAC
CTGGTTGAGTTGATTGGCCGGTGTCTGGTACTCGGCGGTGAGATACAGGA
ACAGCTGCTTCACGTTCCAGTTGAAGATGCCTGTGAGATTCGTTTGCAGA
TCGAAGGTCACGAAGCCCAAGTCGTGCTTCTCCCGGGACGCTCCGTAATC
CGGGACATTCTTCACCAGCACTCTGACCGTGTTGATGTTTGCATCGGTAC
GGTAGTCAAGAAAGACGGTGGACAGGAAGCAGCTGAAGGTGAGGCAAGCT
AGAACGCTCAGCGTGTATGCCACCGTGGCGTTTCCTCGGGTTAACACCGT
GTGCATGTCGACTGATAACT
BS13382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5677-PA | 540 | CG5677-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 1694 | CG5677-RB | 79..619 | 556..16 | 2705 | 100 | Minus |
| Spase22-23-RA | 730 | CG5677-RA | 79..619 | 556..16 | 2705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24229417..24229957 | 16..556 | 2705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:17:16 has no hits.
BS13382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:13 Download gff for
BS13382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5677-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:58 Download gff for
BS13382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..625 | 6..556 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:13 Download gff for
BS13382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..625 | 6..556 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:13 Download gff for
BS13382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24229411..24229957 | 6..556 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:58 Download gff for
BS13382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20055133..20055679 | 6..556 | 99 | | Plus |
BS13382.5prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS13382.5prime
GAAGTTATCAGTCGACATGCACACGGTGTTAACCCGAGGAAACGCCACGG
TGGCATACACGCTGAGCGTTCTAGCTTGCCTCACCTTCAGCTGCTTCCTG
TCCACCGTCTTTCTTGACTACCGTACCGATGCAAACATCAACACGGTCAG
AGTGCTGGTGAAGAATGTCCCGGATTACGGAGCGTCCCGGGAGAAGCACG
ACTTGGGCTTCGTGACCTTCGATCTGCAAACGAATCTCACAGGCATCTTC
AACTGGAACGTGAAGCAGCTGTTCCTGTATCTCACCGCCGAGTACCAGAC
ACCGGCCAATCAACTCAACCAGGTGGTACTGTGGGACAAGATTATCCTGC
GCGGCGACAATGCCGTATTGGACTTCAAGAACATGAACACCAAGTACTAC
TTCTGGGACGACGGGAATGGCCTGAAGGACAACCGCAACGTATCGCTATA
CCTCTCGTGGAACATCATTCCGAACGCGGGACTCCTTCCCTCCGTTCAGG
CCACTGGAAAGCACCTGTTCAAGTTCCCGGCCGACTATGCCACCTCGTCC
ATTTAGAAGCTTTCTAGACC
BS13382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5677-PA | 540 | CG5677-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 1694 | CG5677-RB | 79..619 | 17..557 | 2705 | 100 | Plus |
| Spase22-23-RA | 730 | CG5677-RA | 79..619 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24229417..24229957 | 557..17 | 2705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:08:11 has no hits.
BS13382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:14 Download gff for
BS13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5677-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:59 Download gff for
BS13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..625 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:27 Download gff for
BS13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..625 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:27 Download gff for
BS13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24229411..24229957 | 17..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:59 Download gff for
BS13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20055133..20055679 | 17..567 | 99 | | Minus |
BS13382.complete Sequence
572 bp assembled on 2006-11-01
GenBank Submission: FJ637431
> BS13382.complete
GAAGTTATCAGTCGACATGCACACGGTGTTAACCCGAGGAAACGCCACGG
TGGCATACACGCTGAGCGTTCTAGCTTGCCTCACCTTCAGCTGCTTCCTG
TCCACCGTCTTTCTTGACTACCGTACCGATGCAAACATCAACACGGTCAG
AGTGCTGGTGAAGAATGTCCCGGATTACGGAGCGTCCCGGGAGAAGCACG
ACTTGGGCTTCGTGACCTTCGATCTGCAAACGAATCTCACAGGCATCTTC
AACTGGAACGTGAAGCAGCTGTTCCTGTATCTCACCGCCGAGTACCAGAC
ACCGGCCAATCAACTCAACCAGGTGGTACTGTGGGACAAGATTATCCTGC
GCGGCGACAATGCCGTATTGGACTTCAAGAACATGAACACCAAGTACTAC
TTCTGGGACGACGGGAATGGCCTGAAGGACAACCGCAACGTATCGCTATA
CCTCTCGTGGAACATCATTCCGAACGCGGGACTCCTTCCCTCCGTTCAGG
CCACTGGAAAGCACCTGTTCAAGTTCCCGGCCGACTATGCCACCTCGTCC
ATTTAGAAGCTTTCTAGACCAT
BS13382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 540 | CG5677-PB | 1..540 | 17..556 | 2700 | 100 | Plus |
| Spase22-23-RA | 540 | CG5677-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 1694 | CG5677-RB | 79..619 | 17..557 | 2705 | 100 | Plus |
| Spase22-23-RA | 730 | CG5677-RA | 79..619 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24229417..24229957 | 557..17 | 2705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:50:59 has no hits.
BS13382.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:14 Download gff for
BS13382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:24 Download gff for
BS13382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 73..619 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:26 Download gff for
BS13382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..618 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:14 Download gff for
BS13382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 73..619 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:32 Download gff for
BS13382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..618 | 17..556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:32 Download gff for
BS13382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24229418..24229957 | 17..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:26 Download gff for
BS13382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20055140..20055679 | 17..556 | 100 | | Minus |
BS13382.pep Sequence
Translation from 16 to 555
> BS13382.pep
MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKN
VPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQL
NQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNI
IPNAGLLPSVQATGKHLFKFPADYATSSI*
BS13382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-PB | 179 | CG5677-PB | 1..179 | 1..179 | 947 | 100 | Plus |
| Spase22-23-PA | 179 | CG5677-PA | 1..179 | 1..179 | 947 | 100 | Plus |
