Clone Sequence Records
BS13388.3prime Sequence
698 bp (670 high quality bases) assembled on 2006-10-13
> BS13388.3prime
ATGGTCTAGAAAGCTTTCATATGGCATTGGCCGCCTTGACTATCCAAGGT
CGCAGAATCGCCACATCGGCATAGACACCGGGGTAGTTGTCGTCCGCACA
CCGGTAACCCCAGGATACAATGCCCACCAGCTGGCTACTGGCCACCAAAG
GACCTCCAGAGTCTCCCGTACAGGCATCTGCATCAGTGCTGGCAGCGCAA
ATTGTTTCCTCGCCCACAAAATCCGCACCGTAGCCAAACTTTTGCGAGGC
ACACTCTCCGCGATCGATGATCTGCAACTGGGCCTTCTGCAAGCTATCGG
AGAGGGCTCCATTATCAGTGTGGCCCCAACCCGTGACAGTGACTGTTGTT
CCACCCGATGGACTCGTACTGGCTAAATTGATGGCTCTCGTTGAGAGGCC
AAAGGTCAGTGGTGTGGACAGACGAAGCACGGCAATGTCGTAGTGCAGGA
AGCGGGAATCAAACTGCTCGTGGACTTTGTACGCCGCCACAGGAACCAAT
GTGCCGCCGTAGTTGTGATTCTGTGCACCCACACGCACCTTCATCAGCGT
CACGGATCTCTCATGTAGACAGTGTCCGGCTGTGATGATGATCTCCTTGC
TATAGATGACTCCGCCGCACTCGTGGCGCGCACTGATCTGAATAGACACC
TGCCAGGGGGCGTTACGAATCAGCTGATCGCTTCCGCCAATAATTCGT
BS13388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7754-PA | 759 | iotaTry-RA | 78..759 | 698..17 | 3410 | 100 | Minus |
| CG12351-PA | 762 | deltaTry-RA | 699..725 | 89..63 | 135 | 100 | Minus |
| CG30031-PA | 762 | CG30031-RA | 699..725 | 89..63 | 135 | 100 | Minus |
| CG30025-PA | 762 | CG30025-RA | 699..725 | 89..63 | 135 | 100 | Minus |
| CG30028-PA | 762 | gammaTry-RA | 699..725 | 89..63 | 135 | 100 | Minus |
| CG18444-PA | 771 | alphaTry-RA | 699..725 | 89..63 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 818 | CG7754-RA | 101..783 | 698..16 | 3415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11356820..11357502 | 698..16 | 3415 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:46:37 has no hits.
BS13388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:17 Download gff for
BS13388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7754-PA | 78..759 | 17..698 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:09 Download gff for
BS13388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 101..794 | 5..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:00 Download gff for
BS13388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 101..794 | 5..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:00 Download gff for
BS13388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11356820..11357513 | 5..698 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:09 Download gff for
BS13388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7244325..7245018 | 5..698 | 99 | | Minus |
BS13388.5prime Sequence
688 bp (655 high quality bases) assembled on 2006-10-13
> BS13388.5prime
GAAGTTATCAGTCGACATGGCTGTTTACGGAATAGTGGCTACGGTGCTGG
TCCTTTTGCTGCTCGGCGATGCGTCAGATGTCGAGGCCACTGGACGAATT
ATTGGCGGAAGCGATCAGCTGATTCGTAACGCCCCCTGGCAGGTGTCTAT
TCAGATCAGTGCGCGCCACGAGTGCGGCGGAGTCATCTATAGCAAGGAGA
TCATCATCACAGCCGGACACTGTCTACATGAGAGATCCGTGACGCTGATG
AAGGTGCGTGTGGGTGCACAGAATCACAACTACGGCGGCACATTGGTTCC
TGTGGCGGCGTACAAAGTCCACGAGCAGTTTGATTCCCGCTTCCTGCACT
ACGACATTGCCGTGCTTCGTCTGTCCACACCACTGACCTTTGGCCTCTCA
ACGAGAGCCATCAATTTAGCCAGTACGAGTCCATCGGGTGGAACAACAGT
CACTGTCACGGGTTGGGGCCACACTGATAATGGAGCCCTCTCCGATAGCT
TGCAGAAGGCCCAGTTGCAGATCATCGATCGCGGAGAGTGTGCCTCGCAA
AAGTTTGGCTACGGTGCGGATTTTGTGGGCGAGGAAACAATTTGCGCTGC
CAGCACTGATGCAGATGCCTGTACGGGAGACTCTGGAGGTCCTTTGGTGG
CCAGTAGCCAGCTGGTGGGCATTGTATCCTGGGGTTAC
BS13388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7754-PA | 759 | iotaTry-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 818 | CG7754-RA | 24..695 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11356743..11357414 | 17..688 | 3360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:00:58 has no hits.
BS13388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:17 Download gff for
BS13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7754-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:28 Download gff for
BS13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 19..695 | 8..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:21 Download gff for
BS13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 19..695 | 8..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:21 Download gff for
BS13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11356738..11357414 | 8..688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:28 Download gff for
BS13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7244243..7244919 | 8..688 | 99 | | Plus |
BS13388.complete Sequence
791 bp assembled on 2006-11-01
GenBank Submission: FJ637432
> BS13388.complete
GAAGTTATCAGTCGACATGGCTGTTTACGGAATAGTGGCTACGGTGCTGG
TCCTTTTGCTGCTCGGCGATGCGTCAGATGTCGAGGCCACTGGACGAATT
ATTGGCGGAAGCGATCAGCTGATTCGTAACGCCCCCTGGCAGGTGTCTAT
TCAGATCAGTGCGCGCCACGAGTGCGGCGGAGTCATCTATAGCAAGGAGA
TCATCATCACAGCCGGACACTGTCTACATGAGAGATCCGTGACGCTGATG
AAGGTGCGTGTGGGTGCACAGAATCACAACTACGGCGGCACATTGGTTCC
TGTGGCGGCGTACAAAGTCCACGAGCAGTTTGATTCCCGCTTCCTGCACT
ACGACATTGCCGTGCTTCGTCTGTCCACACCACTGACCTTTGGCCTCTCA
ACGAGAGCCATCAATTTAGCCAGTACGAGTCCATCGGGTGGAACAACAGT
CACTGTCACGGGTTGGGGCCACACTGATAATGGAGCCCTCTCCGATAGCT
TGCAGAAGGCCCAGTTGCAGATCATCGATCGCGGAGAGTGTGCCTCGCAA
AAGTTTGGCTACGGTGCGGATTTTGTGGGCGAGGAAACAATTTGCGCTGC
CAGCACTGATGCAGATGCCTGTACGGGAGACTCTGGAGGTCCTTTGGTGG
CCAGTAGCCAGCTGGTGGGCATTGTATCCTGGGGTTACCGGTGTGCGGAC
GACAACTACCCCGGTGTCTATGCCGATGTGGCGATTCTGCGACCTTGGAT
AGTCAAGGCGGCCAATGCCATATGAAAGCTTTCTAGACCAT
BS13388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 759 | CG7754-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 818 | CG7754-RA | 24..783 | 17..776 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11356743..11357502 | 17..776 | 3800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:00:43 has no hits.
BS13388.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:37 Download gff for
BS13388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:07 Download gff for
BS13388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 17..792 | 8..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:16 Download gff for
BS13388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 24..781 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:37 Download gff for
BS13388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 17..792 | 8..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:57 Download gff for
BS13388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 24..781 | 17..774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:57 Download gff for
BS13388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11356743..11357500 | 17..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:16 Download gff for
BS13388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7244248..7245005 | 17..774 | 100 | | Plus |
BS13388.pep Sequence
Translation from 16 to 774
> BS13388.pep
MAVYGIVATVLVLLLLGDASDVEATGRIIGGSDQLIRNAPWQVSIQISAR
HECGGVIYSKEIIITAGHCLHERSVTLMKVRVGAQNHNYGGTLVPVAAYK
VHEQFDSRFLHYDIAVLRLSTPLTFGLSTRAINLASTSPSGGTTVTVTGW
GHTDNGALSDSLQKAQLQIIDRGECASQKFGYGADFVGEETICAASTDAD
ACTGDSGGPLVASSQLVGIVSWGYRCADDNYPGVYADVAILRPWIVKAAN
AI*
BS13388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-PA | 252 | CG7754-PA | 1..252 | 1..252 | 1304 | 100 | Plus |
| alphaTry-PA | 256 | CG18444-PA | 29..256 | 26..252 | 583 | 48 | Plus |
| Ser8-PA | 260 | CG4812-PA | 4..260 | 6..252 | 569 | 45 | Plus |
| gammaTry-PA | 253 | CG30028-PA | 29..253 | 26..249 | 553 | 45.1 | Plus |
| deltaTry-PA | 253 | CG12351-PA | 29..253 | 26..249 | 553 | 45.1 | Plus |
