Clone BS13390 Report

Search the DGRC for BS13390

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptGstD11-RA
Protein status:BS13390.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13390.3prime Sequence

559 bp (476 high quality bases) assembled on 2006-10-13

> BS13390.3prime
ATGGTCTAGAAAGCTTTTAGCCCGCCGATTGATTCATCTTGGCCTTGAAC
ATATCGGCCAACATATTGGCCTTGTTGGCATTGAGTTCCTCGTAGTCAAA
CGGTGCCATGTGATCCTTGCAGCGATCGAGCCATTGGCGGATATGTTTAT
AGGGTCGAAGTTCAAATTCGAAGGCCTCCAGCTGGGAAACGGTCACCAAA
AGCGTGAGATCCGCGATGGTGAAGTGATCGGCGGCGGAAAACTGTCTGCC
CTCCAAGATTGTGTTTAGCCAGCCCACAGCCTCCGCCAATTTGGCACGCT
TTCCTTCGTCCAGGGGCGCACCAATAAACATTGTGGGGAAATAGTAGTCC
GTGAGTCGCATGTATAGGGTGCCCAAATCGAACTGGAGGCGTTGGTCCAC
CAAAGCCCTCACCCTTATGTCCGTGGGATACAGTTGGTCACTCTTGCCGT
AGGCAGCCACCAGATAGGAGAGTATGGCACGACTTTCCCACAAAACCAGA
CCCTCGTCGTTCATAGTCGGCACACAGTGCTGCGGATTCATGGCCACAAA
GTCCGGTTT

BS13390.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17639-PA 669 CG17639-RA 127..669 559..17 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 839 CG17639-RB 207..749 559..17 2715 100 Minus
GstD11-RA 1051 CG17639-RA 419..961 559..17 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12385211..12385534 340..17 1620 100 Minus
3R 32079331 3R 12384678..12384821 484..341 720 100 Minus
3R 32079331 3R 12384536..12384612 559..483 385 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:50:18 has no hits.

BS13390.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:18 Download gff for BS13390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17639-PA 127..669 17..559 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:18 Download gff for BS13390.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 419..968 8..559 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:35 Download gff for BS13390.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 419..968 8..559 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:35 Download gff for BS13390.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12384536..12384612 483..559 100 -> Minus
3R 12385211..12385541 8..340 99   Minus
3R 12384680..12384821 341..482 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:18 Download gff for BS13390.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8210258..8210334 483..559 100 -> Minus
arm_3R 8210402..8210543 341..482 100 -> Minus
arm_3R 8210933..8211263 8..340 99   Minus

BS13390.5prime Sequence

538 bp (470 high quality bases) assembled on 2006-10-13

> BS13390.5prime
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGGAGGCTTCGAATTT

BS13390.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17639-PA 669 CG17639-RA 1..508 17..524 2540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 839 CG17639-RB 81..602 17..538 2565 99.6 Plus
GstD11-RA 1051 CG17639-RA 293..814 17..538 2565 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12384410..12384612 17..219 1015 100 Plus
3R 32079331 3R 12385211..12385387 362..538 840 98.3 Plus
3R 32079331 3R 12384678..12384821 218..361 720 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:32:30 has no hits.

BS13390.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:19 Download gff for BS13390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17639-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:28 Download gff for BS13390.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..814 17..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:00 Download gff for BS13390.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..814 17..538 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:00 Download gff for BS13390.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12384410..12384612 17..219 100 -> Plus
3R 12384680..12384821 220..361 100 -> Plus
3R 12385211..12385375 362..527 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:28 Download gff for BS13390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8210132..8210334 17..219 100 -> Plus
arm_3R 8210402..8210543 220..361 100 -> Plus
arm_3R 8210933..8211097 362..527 99 -> Plus

BS13390.complete Sequence

701 bp assembled on 2006-11-01

GenBank Submission: FJ637433

> BS13390.complete
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGAGGCCTTCGAATTTGAACTTCGACCC
TATAAACATATCCGCCAATGGCTCGATCGCTGCAAGGATCACATGGCACC
GTTTGACTACGAGGAACTCAATGCCAACAAGGCCAATATGTTGGCCGATA
TGTTCAAGGCCAAGATGAATCAATCGGCGGGCTAAAAGCTTTCTAGACCA
T

BS13390.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 732 CG17639-PB 64..732 17..685 3345 100 Plus
GstD11-RA 669 CG17639-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 839 CG17639-RB 81..749 17..685 3345 100 Plus
GstD11-RA 1051 CG17639-RA 293..961 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12385211..12385534 362..685 1620 100 Plus
3R 32079331 3R 12384410..12384612 17..219 1015 100 Plus
3R 32079331 3R 12384678..12384821 218..361 720 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:35:36 has no hits.

BS13390.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:54 Download gff for BS13390.complete
Subject Subject Range Query Range Percent Splice Strand
CG17639-RB 64..732 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:16 Download gff for BS13390.complete
Subject Subject Range Query Range Percent Splice Strand
CG17639-RB 64..739 17..694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:39 Download gff for BS13390.complete
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..959 17..683 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:08 Download gff for BS13390.complete
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..959 17..683 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:08 Download gff for BS13390.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12385211..12385532 362..683 100   Plus
3R 12384410..12384612 17..219 100 -> Plus
3R 12384680..12384821 220..361 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:39 Download gff for BS13390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8210132..8210334 17..219 100 -> Plus
arm_3R 8210402..8210543 220..361 100 -> Plus
arm_3R 8210933..8211254 362..683 100   Plus

BS13390.pep Sequence

Translation from 16 to 684

> BS13390.pep
MSPPVLYYLPPSPPCRSILLLAKMLDIDFELKIVNILEGEQLKPDFVAMN
PQHCVPTMNDEGLVLWESRAILSYLVAAYGKSDQLYPTDIRVRALVDQRL
QFDLGTLYMRLTDYYFPTMFIGAPLDEGKRAKLAEAVGWLNTILEGRQFS
AADHFTIADLTLLVTVSQLEAFEFELRPYKHIRQWLDRCKDHMAPFDYEE
LNANKANMLADMFKAKMNQSAG*

BS13390.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-PA 222 CG17639-PA 1..222 1..222 1163 100 Plus
GstD11-PB 243 CG17639-PB 22..243 1..222 1163 100 Plus
GstD1-PB 209 CG10045-PB 5..188 7..190 479 46.2 Plus
GstD1-PA 209 CG10045-PA 5..188 7..190 479 46.2 Plus
GstD2-PA 215 CG4181-PA 4..215 7..216 469 42.9 Plus