Clone Sequence Records
BS13390.3prime Sequence
559 bp (476 high quality bases) assembled on 2006-10-13
> BS13390.3prime
ATGGTCTAGAAAGCTTTTAGCCCGCCGATTGATTCATCTTGGCCTTGAAC
ATATCGGCCAACATATTGGCCTTGTTGGCATTGAGTTCCTCGTAGTCAAA
CGGTGCCATGTGATCCTTGCAGCGATCGAGCCATTGGCGGATATGTTTAT
AGGGTCGAAGTTCAAATTCGAAGGCCTCCAGCTGGGAAACGGTCACCAAA
AGCGTGAGATCCGCGATGGTGAAGTGATCGGCGGCGGAAAACTGTCTGCC
CTCCAAGATTGTGTTTAGCCAGCCCACAGCCTCCGCCAATTTGGCACGCT
TTCCTTCGTCCAGGGGCGCACCAATAAACATTGTGGGGAAATAGTAGTCC
GTGAGTCGCATGTATAGGGTGCCCAAATCGAACTGGAGGCGTTGGTCCAC
CAAAGCCCTCACCCTTATGTCCGTGGGATACAGTTGGTCACTCTTGCCGT
AGGCAGCCACCAGATAGGAGAGTATGGCACGACTTTCCCACAAAACCAGA
CCCTCGTCGTTCATAGTCGGCACACAGTGCTGCGGATTCATGGCCACAAA
GTCCGGTTT
BS13390.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17639-PA | 669 | CG17639-RA | 127..669 | 559..17 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 839 | CG17639-RB | 207..749 | 559..17 | 2715 | 100 | Minus |
GstD11-RA | 1051 | CG17639-RA | 419..961 | 559..17 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12385211..12385534 | 340..17 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 12384678..12384821 | 484..341 | 720 | 100 | Minus |
3R | 32079331 | 3R | 12384536..12384612 | 559..483 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:50:18 has no hits.
BS13390.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:18 Download gff for
BS13390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-PA | 127..669 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:18 Download gff for
BS13390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 419..968 | 8..559 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:35 Download gff for
BS13390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 419..968 | 8..559 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:35 Download gff for
BS13390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12384536..12384612 | 483..559 | 100 | -> | Minus |
3R | 12385211..12385541 | 8..340 | 99 | | Minus |
3R | 12384680..12384821 | 341..482 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:18 Download gff for
BS13390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8210258..8210334 | 483..559 | 100 | -> | Minus |
arm_3R | 8210402..8210543 | 341..482 | 100 | -> | Minus |
arm_3R | 8210933..8211263 | 8..340 | 99 | | Minus |
BS13390.5prime Sequence
538 bp (470 high quality bases) assembled on 2006-10-13
> BS13390.5prime
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGGAGGCTTCGAATTT
BS13390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17639-PA | 669 | CG17639-RA | 1..508 | 17..524 | 2540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 839 | CG17639-RB | 81..602 | 17..538 | 2565 | 99.6 | Plus |
GstD11-RA | 1051 | CG17639-RA | 293..814 | 17..538 | 2565 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12384410..12384612 | 17..219 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 12385211..12385387 | 362..538 | 840 | 98.3 | Plus |
3R | 32079331 | 3R | 12384678..12384821 | 218..361 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:32:30 has no hits.
BS13390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:19 Download gff for
BS13390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:28 Download gff for
BS13390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..814 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:00 Download gff for
BS13390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..814 | 17..538 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:00 Download gff for
BS13390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12384410..12384612 | 17..219 | 100 | -> | Plus |
3R | 12384680..12384821 | 220..361 | 100 | -> | Plus |
3R | 12385211..12385375 | 362..527 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:28 Download gff for
BS13390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8210132..8210334 | 17..219 | 100 | -> | Plus |
arm_3R | 8210402..8210543 | 220..361 | 100 | -> | Plus |
arm_3R | 8210933..8211097 | 362..527 | 99 | -> | Plus |
BS13390.complete Sequence
701 bp assembled on 2006-11-01
GenBank Submission: FJ637433
> BS13390.complete
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGAGGCCTTCGAATTTGAACTTCGACCC
TATAAACATATCCGCCAATGGCTCGATCGCTGCAAGGATCACATGGCACC
GTTTGACTACGAGGAACTCAATGCCAACAAGGCCAATATGTTGGCCGATA
TGTTCAAGGCCAAGATGAATCAATCGGCGGGCTAAAAGCTTTCTAGACCA
T
BS13390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 732 | CG17639-PB | 64..732 | 17..685 | 3345 | 100 | Plus |
GstD11-RA | 669 | CG17639-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 839 | CG17639-RB | 81..749 | 17..685 | 3345 | 100 | Plus |
GstD11-RA | 1051 | CG17639-RA | 293..961 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12385211..12385534 | 362..685 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 12384410..12384612 | 17..219 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 12384678..12384821 | 218..361 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:35:36 has no hits.
BS13390.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:54 Download gff for
BS13390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-RB | 64..732 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:16 Download gff for
BS13390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-RB | 64..739 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:39 Download gff for
BS13390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..959 | 17..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:08 Download gff for
BS13390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..959 | 17..683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:08 Download gff for
BS13390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12385211..12385532 | 362..683 | 100 | | Plus |
3R | 12384410..12384612 | 17..219 | 100 | -> | Plus |
3R | 12384680..12384821 | 220..361 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:39 Download gff for
BS13390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8210132..8210334 | 17..219 | 100 | -> | Plus |
arm_3R | 8210402..8210543 | 220..361 | 100 | -> | Plus |
arm_3R | 8210933..8211254 | 362..683 | 100 | | Plus |
BS13390.pep Sequence
Translation from 16 to 684
> BS13390.pep
MSPPVLYYLPPSPPCRSILLLAKMLDIDFELKIVNILEGEQLKPDFVAMN
PQHCVPTMNDEGLVLWESRAILSYLVAAYGKSDQLYPTDIRVRALVDQRL
QFDLGTLYMRLTDYYFPTMFIGAPLDEGKRAKLAEAVGWLNTILEGRQFS
AADHFTIADLTLLVTVSQLEAFEFELRPYKHIRQWLDRCKDHMAPFDYEE
LNANKANMLADMFKAKMNQSAG*
BS13390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-PA | 222 | CG17639-PA | 1..222 | 1..222 | 1163 | 100 | Plus |
GstD11-PB | 243 | CG17639-PB | 22..243 | 1..222 | 1163 | 100 | Plus |
GstD1-PB | 209 | CG10045-PB | 5..188 | 7..190 | 479 | 46.2 | Plus |
GstD1-PA | 209 | CG10045-PA | 5..188 | 7..190 | 479 | 46.2 | Plus |
GstD2-PA | 215 | CG4181-PA | 4..215 | 7..216 | 469 | 42.9 | Plus |