Clone Sequence Records
BS13396.3prime Sequence
498 bp (498 high quality bases) assembled on 2006-10-13
> BS13396.3prime
ATGGTCTAGAAAGCTTTCACTGCTGGGCAATGGGCGCCGCGGTGGGCGTG
GCCACGGGCGGGGACGAGGTGGCGGGATCCGCGTTCACGAACTCAATGGA
GGCGGAATTGATGCAGTAGCGCTTGCGGGTCGGCTTCGGACCATCCTCGA
AGACGTGACCCATGTGGGCGTTGCAGCGGGCGCAGCGGACCTCAGTGCGT
ATACGTTCTGGTATGCTGGCATCGCGGTGCAGCGTGACCTTGCCCTTGTC
TAGGACATCGTTGAAGGCCGGCCATCCGCATCCCGAGTCGTACTTGGTCT
CCGAGCTGAACAGATCCTGGTGGCACACGATGCACTGGTACACGCCCTTC
TCGTAGTGTTTGTTGTAGCAACCTGTGAAGGGTCGCTCGGTGCCCGCCTC
CTGGGTAACCTGATACTGCACCGGGGTCAGGCGCTTGCGCAGCTCCTCCT
TGTTCACCGTAACCTTCTCGCTCTTGTTATCCATGTCGACTGATAACT
BS13396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6584-PA | 468 | SelR-RA | 1..468 | 484..17 | 2340 | 100 | Minus |
CG6584-PC | 594 | SelR-RC | 127..594 | 484..17 | 2340 | 100 | Minus |
CG6584-PF | 468 | SelR-RF | 1..468 | 484..17 | 2340 | 100 | Minus |
CG6584-PB | 501 | SelR-RB | 1..277 | 484..208 | 1385 | 100 | Minus |
CG6584-PE | 627 | SelR-RE | 127..403 | 484..208 | 1385 | 100 | Minus |
CG6584-PD | 594 | SelR-RD | 1..277 | 484..208 | 1385 | 100 | Minus |
CG6584-PB | 501 | SelR-RB | 307..501 | 211..17 | 975 | 100 | Minus |
CG6584-PE | 627 | SelR-RE | 433..627 | 211..17 | 975 | 100 | Minus |
CG6584-PD | 594 | SelR-RD | 404..594 | 207..17 | 955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RI | 992 | CG6584-RI | 245..712 | 484..17 | 2340 | 100 | Minus |
SelR-RC | 1123 | CG6584-RC | 376..843 | 484..17 | 2340 | 100 | Minus |
SelR-RA | 1008 | CG6584-RA | 261..728 | 484..17 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10863635..10863829 | 17..211 | 975 | 100 | Plus |
3R | 32079331 | 3R | 10866529..10866698 | 208..377 | 850 | 100 | Plus |
3R | 32079331 | 3R | 10866807..10866920 | 371..484 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:54:44 has no hits.
BS13396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:22 Download gff for
BS13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6584-PC | 119..594 | 17..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:37 Download gff for
BS13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RA | 253..731 | 13..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:26 Download gff for
BS13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RA | 253..731 | 13..492 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:26 Download gff for
BS13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10863632..10863825 | 13..207 | 98 | <- | Plus |
3R | 10866529..10866693 | 208..372 | 100 | <- | Plus |
3R | 10866809..10866928 | 373..492 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:37 Download gff for
BS13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6689354..6689547 | 13..207 | 98 | <- | Plus |
arm_3R | 6692251..6692415 | 208..372 | 100 | <- | Plus |
arm_3R | 6692531..6692650 | 373..492 | 98 | | Plus |
BS13396.5prime Sequence
498 bp (498 high quality bases) assembled on 2006-10-13
> BS13396.5prime
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGAACGTAT
ACGCACTGAGGTCCGCTGCGCCCGCTGCAACGCCCACATGGGTCACGTCT
TCGAGGATGGTCCGAAGCCGACCCGCAAGCGCTACTGCATCAATTCCGCC
TCCATTGAGTTCGTGAACGCGGATCCCGCCACCTCGTCCCCGCCCGTGGC
CACGCCCACCGCGGCGCCCATTGCCCAGCAGTGAAAGCTTTCTAGACC
BS13396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6584-PA | 468 | SelR-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
CG6584-PC | 594 | SelR-RC | 127..594 | 17..484 | 2340 | 100 | Plus |
CG6584-PF | 468 | SelR-RF | 1..468 | 17..484 | 2340 | 100 | Plus |
CG6584-PB | 501 | SelR-RB | 1..277 | 17..293 | 1385 | 100 | Plus |
CG6584-PE | 627 | SelR-RE | 127..403 | 17..293 | 1385 | 100 | Plus |
CG6584-PD | 594 | SelR-RD | 1..277 | 17..293 | 1385 | 100 | Plus |
CG6584-PB | 501 | SelR-RB | 307..501 | 290..484 | 975 | 100 | Plus |
CG6584-PE | 627 | SelR-RE | 433..627 | 290..484 | 975 | 100 | Plus |
CG6584-PD | 594 | SelR-RD | 404..594 | 294..484 | 955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RI | 992 | CG6584-RI | 245..712 | 17..484 | 2340 | 100 | Plus |
SelR-RC | 1123 | CG6584-RC | 376..843 | 17..484 | 2340 | 100 | Plus |
SelR-RA | 1008 | CG6584-RA | 261..728 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10863635..10863829 | 484..290 | 975 | 100 | Minus |
3R | 32079331 | 3R | 10866529..10866698 | 293..124 | 850 | 100 | Minus |
3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:14:20 has no hits.
BS13396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:23 Download gff for
BS13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6584-PC | 119..594 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:54:06 Download gff for
BS13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RA | 253..731 | 9..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:49 Download gff for
BS13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RA | 253..731 | 9..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:49 Download gff for
BS13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10863632..10863825 | 294..488 | 98 | <- | Minus |
3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
3R | 10866809..10866928 | 9..128 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:54:06 Download gff for
BS13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6689354..6689547 | 294..488 | 98 | <- | Minus |
arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
arm_3R | 6692531..6692650 | 9..128 | 98 | | Minus |
BS13396.complete Sequence
500 bp assembled on 2006-11-01
GenBank Submission: FJ637434
> BS13396.complete
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGAACGTAT
ACGCACTGAGGTCCGCTGCGCCCGCTGCAACGCCCACATGGGTCACGTCT
TCGAGGATGGTCCGAAGCCGACCCGCAAGCGCTACTGCATCAATTCCGCC
TCCATTGAGTTCGTGAACGCGGATCCCGCCACCTCGTCCCCGCCCGTGGC
CACGCCCACCGCGGCGCCCATTGCCCAGCAGTGAAAGCTTTCTAGACCAT
BS13396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RI | 468 | CG6584-PI | 1..468 | 17..484 | 2340 | 100 | Plus |
SelR-RC | 594 | CG6584-PC | 127..594 | 17..484 | 2340 | 100 | Plus |
SelR-RA | 468 | CG6584-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RI | 992 | CG6584-RI | 245..712 | 17..484 | 2340 | 100 | Plus |
SelR-RC | 1123 | CG6584-RC | 376..843 | 17..484 | 2340 | 100 | Plus |
SelR-RA | 1008 | CG6584-RA | 261..728 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10863635..10863829 | 484..290 | 975 | 100 | Minus |
3R | 32079331 | 3R | 10866529..10866698 | 293..124 | 850 | 100 | Minus |
3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:10:56 has no hits.
BS13396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:16 Download gff for
BS13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:25 Download gff for
BS13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RI | 252..730 | 9..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:33 Download gff for
BS13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RA | 261..727 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:16 Download gff for
BS13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RI | 252..730 | 9..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:03 Download gff for
BS13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RA | 261..727 | 17..483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:03 Download gff for
BS13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10863636..10863825 | 294..483 | 100 | <- | Minus |
3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
3R | 10866809..10866920 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:33 Download gff for
BS13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6689358..6689547 | 294..483 | 100 | <- | Minus |
arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
arm_3R | 6692531..6692642 | 17..128 | 100 | | Minus |
BS13396.pep Sequence
Translation from 16 to 483
> BS13396.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPERIRTEVR
CARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNADPATSSPPVATPTAA
PIAQQ*
BS13396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-PI | 155 | CG6584-PI | 1..155 | 1..155 | 842 | 100 | Plus |
SelR-PA | 155 | CG6584-PA | 1..155 | 1..155 | 842 | 100 | Plus |
SelR-PC | 197 | CG6584-PC | 43..197 | 1..155 | 842 | 100 | Plus |
SelR-PB | 166 | CG6584-PB | 1..166 | 1..155 | 820 | 93.4 | Plus |
SelR-PE | 208 | CG6584-PE | 43..208 | 1..155 | 820 | 93.4 | Plus |