Clone BS13396 Report

Search the DGRC for BS13396

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:133
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptSelR-RA
Protein status:BS13396.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13396.3prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-13

> BS13396.3prime
ATGGTCTAGAAAGCTTTCACTGCTGGGCAATGGGCGCCGCGGTGGGCGTG
GCCACGGGCGGGGACGAGGTGGCGGGATCCGCGTTCACGAACTCAATGGA
GGCGGAATTGATGCAGTAGCGCTTGCGGGTCGGCTTCGGACCATCCTCGA
AGACGTGACCCATGTGGGCGTTGCAGCGGGCGCAGCGGACCTCAGTGCGT
ATACGTTCTGGTATGCTGGCATCGCGGTGCAGCGTGACCTTGCCCTTGTC
TAGGACATCGTTGAAGGCCGGCCATCCGCATCCCGAGTCGTACTTGGTCT
CCGAGCTGAACAGATCCTGGTGGCACACGATGCACTGGTACACGCCCTTC
TCGTAGTGTTTGTTGTAGCAACCTGTGAAGGGTCGCTCGGTGCCCGCCTC
CTGGGTAACCTGATACTGCACCGGGGTCAGGCGCTTGCGCAGCTCCTCCT
TGTTCACCGTAACCTTCTCGCTCTTGTTATCCATGTCGACTGATAACT

BS13396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6584-PA 468 SelR-RA 1..468 484..17 2340 100 Minus
CG6584-PC 594 SelR-RC 127..594 484..17 2340 100 Minus
CG6584-PF 468 SelR-RF 1..468 484..17 2340 100 Minus
CG6584-PB 501 SelR-RB 1..277 484..208 1385 100 Minus
CG6584-PE 627 SelR-RE 127..403 484..208 1385 100 Minus
CG6584-PD 594 SelR-RD 1..277 484..208 1385 100 Minus
CG6584-PB 501 SelR-RB 307..501 211..17 975 100 Minus
CG6584-PE 627 SelR-RE 433..627 211..17 975 100 Minus
CG6584-PD 594 SelR-RD 404..594 207..17 955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RI 992 CG6584-RI 245..712 484..17 2340 100 Minus
SelR-RC 1123 CG6584-RC 376..843 484..17 2340 100 Minus
SelR-RA 1008 CG6584-RA 261..728 484..17 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10863635..10863829 17..211 975 100 Plus
3R 32079331 3R 10866529..10866698 208..377 850 100 Plus
3R 32079331 3R 10866807..10866920 371..484 570 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:54:44 has no hits.

BS13396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:22 Download gff for BS13396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6584-PC 119..594 17..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:37 Download gff for BS13396.3prime
Subject Subject Range Query Range Percent Splice Strand
SelR-RA 253..731 13..492 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:26 Download gff for BS13396.3prime
Subject Subject Range Query Range Percent Splice Strand
SelR-RA 253..731 13..492 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:26 Download gff for BS13396.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10863632..10863825 13..207 98 <- Plus
3R 10866529..10866693 208..372 100 <- Plus
3R 10866809..10866928 373..492 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:37 Download gff for BS13396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6689354..6689547 13..207 98 <- Plus
arm_3R 6692251..6692415 208..372 100 <- Plus
arm_3R 6692531..6692650 373..492 98   Plus

BS13396.5prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-13

> BS13396.5prime
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGAACGTAT
ACGCACTGAGGTCCGCTGCGCCCGCTGCAACGCCCACATGGGTCACGTCT
TCGAGGATGGTCCGAAGCCGACCCGCAAGCGCTACTGCATCAATTCCGCC
TCCATTGAGTTCGTGAACGCGGATCCCGCCACCTCGTCCCCGCCCGTGGC
CACGCCCACCGCGGCGCCCATTGCCCAGCAGTGAAAGCTTTCTAGACC

BS13396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6584-PA 468 SelR-RA 1..468 17..484 2340 100 Plus
CG6584-PC 594 SelR-RC 127..594 17..484 2340 100 Plus
CG6584-PF 468 SelR-RF 1..468 17..484 2340 100 Plus
CG6584-PB 501 SelR-RB 1..277 17..293 1385 100 Plus
CG6584-PE 627 SelR-RE 127..403 17..293 1385 100 Plus
CG6584-PD 594 SelR-RD 1..277 17..293 1385 100 Plus
CG6584-PB 501 SelR-RB 307..501 290..484 975 100 Plus
CG6584-PE 627 SelR-RE 433..627 290..484 975 100 Plus
CG6584-PD 594 SelR-RD 404..594 294..484 955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RI 992 CG6584-RI 245..712 17..484 2340 100 Plus
SelR-RC 1123 CG6584-RC 376..843 17..484 2340 100 Plus
SelR-RA 1008 CG6584-RA 261..728 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10863635..10863829 484..290 975 100 Minus
3R 32079331 3R 10866529..10866698 293..124 850 100 Minus
3R 32079331 3R 10866807..10866920 130..17 570 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:14:20 has no hits.

BS13396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:23 Download gff for BS13396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6584-PC 119..594 9..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:54:06 Download gff for BS13396.5prime
Subject Subject Range Query Range Percent Splice Strand
SelR-RA 253..731 9..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:49 Download gff for BS13396.5prime
Subject Subject Range Query Range Percent Splice Strand
SelR-RA 253..731 9..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:49 Download gff for BS13396.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10863632..10863825 294..488 98 <- Minus
3R 10866529..10866693 129..293 100 <- Minus
3R 10866809..10866928 9..128 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:54:06 Download gff for BS13396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6689354..6689547 294..488 98 <- Minus
arm_3R 6692251..6692415 129..293 100 <- Minus
arm_3R 6692531..6692650 9..128 98   Minus

BS13396.complete Sequence

500 bp assembled on 2006-11-01

GenBank Submission: FJ637434

> BS13396.complete
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGAACGTAT
ACGCACTGAGGTCCGCTGCGCCCGCTGCAACGCCCACATGGGTCACGTCT
TCGAGGATGGTCCGAAGCCGACCCGCAAGCGCTACTGCATCAATTCCGCC
TCCATTGAGTTCGTGAACGCGGATCCCGCCACCTCGTCCCCGCCCGTGGC
CACGCCCACCGCGGCGCCCATTGCCCAGCAGTGAAAGCTTTCTAGACCAT

BS13396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RI 468 CG6584-PI 1..468 17..484 2340 100 Plus
SelR-RC 594 CG6584-PC 127..594 17..484 2340 100 Plus
SelR-RA 468 CG6584-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RI 992 CG6584-RI 245..712 17..484 2340 100 Plus
SelR-RC 1123 CG6584-RC 376..843 17..484 2340 100 Plus
SelR-RA 1008 CG6584-RA 261..728 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10863635..10863829 484..290 975 100 Minus
3R 32079331 3R 10866529..10866698 293..124 850 100 Minus
3R 32079331 3R 10866807..10866920 130..17 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:10:56 has no hits.

BS13396.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:16 Download gff for BS13396.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:25 Download gff for BS13396.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RI 252..730 9..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:33 Download gff for BS13396.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RA 261..727 17..483 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:16 Download gff for BS13396.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RI 252..730 9..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:03 Download gff for BS13396.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RA 261..727 17..483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:03 Download gff for BS13396.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10863636..10863825 294..483 100 <- Minus
3R 10866529..10866693 129..293 100 <- Minus
3R 10866809..10866920 17..128 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:33 Download gff for BS13396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6689358..6689547 294..483 100 <- Minus
arm_3R 6692251..6692415 129..293 100 <- Minus
arm_3R 6692531..6692642 17..128 100   Minus

BS13396.pep Sequence

Translation from 16 to 483

> BS13396.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPERIRTEVR
CARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNADPATSSPPVATPTAA
PIAQQ*

BS13396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PI 155 CG6584-PI 1..155 1..155 842 100 Plus
SelR-PA 155 CG6584-PA 1..155 1..155 842 100 Plus
SelR-PC 197 CG6584-PC 43..197 1..155 842 100 Plus
SelR-PB 166 CG6584-PB 1..166 1..155 820 93.4 Plus
SelR-PE 208 CG6584-PE 43..208 1..155 820 93.4 Plus