Clone BS13402 Report

Search the DGRC for BS13402

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL52-RA
Protein status:BS13402.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13402.3prime Sequence

411 bp (411 high quality bases) assembled on 2006-10-13

> BS13402.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGAGCAGGAAGTGGCCCTTGGGCTTC
AGTTTGCTGCGGATGAGGCGCTGTTTCTCGGACTCGGCATTTGCCTTAAG
GCGTTCATGTCGCTGCTTGGCGAACTCTAGCTCCCCACTTAGCTCCACGA
TCCTGGTGGCGATCTCCTGCTGCTTAATCAGGCGCCTCTTCTGGTTGGCA
CCTAGCGGCGTGGGCCTACCATCTAAGTACGTGTAGTCGGGCAGGTTGGT
GAGTGGGCCAAAGGCATTTGGGTTTTCCGGCAATCCCTTGGCTGCACGCC
ACTTCTGATCAATGGCACGGGGGGCAGTAAGAGCAATGCTTCGCTGAGCT
GTACTTGTGGCGGAGCTGGCCAAGCAGATCTTTGTTATTTTCAGCATGTC
GACTGATAACT

BS13402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1577-PA 381 mRpL52-RA 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 22:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 558 CG1577-RA 98..478 397..17 1905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 22:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7673801..7673983 17..199 915 100 Plus
2R 25286936 2R 7674043..7674195 199..351 765 100 Plus
2R 25286936 2R 7674255..7674303 349..397 245 100 Plus
Blast to na_te.dros performed on 2015-01-29 22:55:37 has no hits.

BS13402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:24 Download gff for BS13402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1577-PA 1..381 17..397 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:38:52 Download gff for BS13402.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..478 17..397 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:03:53 Download gff for BS13402.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..478 17..397 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 01:03:53 Download gff for BS13402.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7673801..7673983 17..199 100 <- Plus
2R 7674044..7674192 200..348 100 <- Plus
2R 7674255..7674303 349..397 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:38:52 Download gff for BS13402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3561549..3561697 200..348 100 <- Plus
arm_2R 3561306..3561488 17..199 100 <- Plus
arm_2R 3561760..3561808 349..397 100   Plus

BS13402.5prime Sequence

411 bp (411 high quality bases) assembled on 2006-10-13

> BS13402.5prime
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAATAGAAG
CTTTCTAGACC

BS13402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1577-PA 381 mRpL52-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 558 CG1577-RA 98..478 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7673801..7673983 397..215 915 100 Minus
2R 25286936 2R 7674043..7674195 215..63 765 100 Minus
2R 25286936 2R 7674255..7674303 65..17 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:04:51 has no hits.

BS13402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:24 Download gff for BS13402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1577-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:23 Download gff for BS13402.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..478 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:14 Download gff for BS13402.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..478 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:14 Download gff for BS13402.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7673801..7673983 215..397 100 <- Minus
2R 7674044..7674192 66..214 100 <- Minus
2R 7674255..7674303 17..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:23 Download gff for BS13402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3561306..3561488 215..397 100 <- Minus
arm_2R 3561549..3561697 66..214 100 <- Minus
arm_2R 3561760..3561808 17..65 100   Minus

BS13402.complete Sequence

413 bp assembled on 2006-11-01

GenBank Submission: FJ637435

> BS13402.complete
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAATAGAAG
CTTTCTAGACCAT

BS13402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 381 CG1577-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-RA 558 CG1577-RA 98..478 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7673801..7673983 397..215 915 100 Minus
2R 25286936 2R 7674043..7674195 215..63 765 100 Minus
2R 25286936 2R 7674255..7674303 65..17 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:11:22 has no hits.

BS13402.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:32 Download gff for BS13402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:15 Download gff for BS13402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 101..481 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:33 Download gff for BS13402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..472 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:33 Download gff for BS13402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 101..481 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:21 Download gff for BS13402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL52-RA 98..472 17..391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:21 Download gff for BS13402.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7673807..7673983 215..391 100 <- Minus
2R 7674044..7674192 66..214 100 <- Minus
2R 7674255..7674303 17..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:33 Download gff for BS13402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3561312..3561488 215..391 100 <- Minus
arm_2R 3561549..3561697 66..214 100 <- Minus
arm_2R 3561760..3561808 17..65 100   Minus

BS13402.pep Sequence

Translation from 16 to 396

> BS13402.pep
MLKITKICLASSATSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLT
NLPDYTYLDGRPTPLGANQKRRLIKQQEIATRIVELSGELEFAKQRHERL
KANAESEKQRLIRSKLKPKGHFLLKK*

BS13402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL52-PA 126 CG1577-PA 1..126 1..126 637 100 Plus