Clone Sequence Records
BS13402.3prime Sequence
411 bp (411 high quality bases) assembled on 2006-10-13
> BS13402.3prime
ATGGTCTAGAAAGCTTCTATTTCTTGAGCAGGAAGTGGCCCTTGGGCTTC
AGTTTGCTGCGGATGAGGCGCTGTTTCTCGGACTCGGCATTTGCCTTAAG
GCGTTCATGTCGCTGCTTGGCGAACTCTAGCTCCCCACTTAGCTCCACGA
TCCTGGTGGCGATCTCCTGCTGCTTAATCAGGCGCCTCTTCTGGTTGGCA
CCTAGCGGCGTGGGCCTACCATCTAAGTACGTGTAGTCGGGCAGGTTGGT
GAGTGGGCCAAAGGCATTTGGGTTTTCCGGCAATCCCTTGGCTGCACGCC
ACTTCTGATCAATGGCACGGGGGGCAGTAAGAGCAATGCTTCGCTGAGCT
GTACTTGTGGCGGAGCTGGCCAAGCAGATCTTTGTTATTTTCAGCATGTC
GACTGATAACT
BS13402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1577-PA | 381 | mRpL52-RA | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 22:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 558 | CG1577-RA | 98..478 | 397..17 | 1905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 22:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7673801..7673983 | 17..199 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7674043..7674195 | 199..351 | 765 | 100 | Plus |
2R | 25286936 | 2R | 7674255..7674303 | 349..397 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-29 22:55:37 has no hits.
BS13402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:24 Download gff for
BS13402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1577-PA | 1..381 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:38:52 Download gff for
BS13402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..478 | 17..397 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:03:53 Download gff for
BS13402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..478 | 17..397 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 01:03:53 Download gff for
BS13402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7673801..7673983 | 17..199 | 100 | <- | Plus |
2R | 7674044..7674192 | 200..348 | 100 | <- | Plus |
2R | 7674255..7674303 | 349..397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:38:52 Download gff for
BS13402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3561549..3561697 | 200..348 | 100 | <- | Plus |
arm_2R | 3561306..3561488 | 17..199 | 100 | <- | Plus |
arm_2R | 3561760..3561808 | 349..397 | 100 | | Plus |
BS13402.5prime Sequence
411 bp (411 high quality bases) assembled on 2006-10-13
> BS13402.5prime
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAATAGAAG
CTTTCTAGACC
BS13402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1577-PA | 381 | mRpL52-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 558 | CG1577-RA | 98..478 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7673801..7673983 | 397..215 | 915 | 100 | Minus |
2R | 25286936 | 2R | 7674043..7674195 | 215..63 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7674255..7674303 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:04:51 has no hits.
BS13402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:24 Download gff for
BS13402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1577-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:23 Download gff for
BS13402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..478 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:14 Download gff for
BS13402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..478 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:14 Download gff for
BS13402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7673801..7673983 | 215..397 | 100 | <- | Minus |
2R | 7674044..7674192 | 66..214 | 100 | <- | Minus |
2R | 7674255..7674303 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:23 Download gff for
BS13402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3561306..3561488 | 215..397 | 100 | <- | Minus |
arm_2R | 3561549..3561697 | 66..214 | 100 | <- | Minus |
arm_2R | 3561760..3561808 | 17..65 | 100 | | Minus |
BS13402.complete Sequence
413 bp assembled on 2006-11-01
GenBank Submission: FJ637435
> BS13402.complete
GAAGTTATCAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCT
CCGCCACAAGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCC
ATTGATCAGAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGC
CTTTGGCCCACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGC
CCACGCCGCTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAG
ATCGCCACCAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCA
GCGACATGAACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCA
TCCGCAGCAAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAATAGAAG
CTTTCTAGACCAT
BS13402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 381 | CG1577-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-RA | 558 | CG1577-RA | 98..478 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7673801..7673983 | 397..215 | 915 | 100 | Minus |
2R | 25286936 | 2R | 7674043..7674195 | 215..63 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7674255..7674303 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:11:22 has no hits.
BS13402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:32 Download gff for
BS13402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:15 Download gff for
BS13402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 101..481 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:33 Download gff for
BS13402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..472 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:33 Download gff for
BS13402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 101..481 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:21 Download gff for
BS13402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL52-RA | 98..472 | 17..391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:21 Download gff for
BS13402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7673807..7673983 | 215..391 | 100 | <- | Minus |
2R | 7674044..7674192 | 66..214 | 100 | <- | Minus |
2R | 7674255..7674303 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:33 Download gff for
BS13402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3561312..3561488 | 215..391 | 100 | <- | Minus |
arm_2R | 3561549..3561697 | 66..214 | 100 | <- | Minus |
arm_2R | 3561760..3561808 | 17..65 | 100 | | Minus |
BS13402.pep Sequence
Translation from 16 to 396
> BS13402.pep
MLKITKICLASSATSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLT
NLPDYTYLDGRPTPLGANQKRRLIKQQEIATRIVELSGELEFAKQRHERL
KANAESEKQRLIRSKLKPKGHFLLKK*
BS13402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL52-PA | 126 | CG1577-PA | 1..126 | 1..126 | 637 | 100 | Plus |