Clone BS13403 Report

Search the DGRC for BS13403

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG6870-RA
Protein status:BS13403.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13403.3prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-13

> BS13403.3prime
ATGGTCTAGAAAGCTTTTATTCCGGTATGCCCAGGGACAAAACCTTGTTT
TTGCCAGTGCGAAAAATGTGCTGCTTGGTGGGCAGTTGACCGATCAAGAA
ATCCTTCATCATTTCGATGGCATCCCCCGAGTGTCCTGTGCCATGGAAGG
CGATGGTGGCATCTCGCCCTGCGTGATCCATAATGACGTCGTCGCCGCCG
GGATGATCCCTTAGAAAGTGTGTCACATCGTAGACCCTATCGTAGATTAC
CACCCAGCAATCGTCGAAGCTGTCGTGCTGGGCCACCTCCTCCAATGCGA
TCTCCGGCAGATCTTCCAGTTTTAAACGTTCCTTTTTGCTTGGTACAACG
ACCACCTGATTACTGGACTTTCCATGTCCCAAGGGCACAATTCTCAGCGA
TTGCAAGAGGTTCGTCAACGCGGATGACATGTCGACTGATAACT

BS13403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-PA 414 CG6870-RA 1..414 430..17 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 985 CG6870-RB 187..602 432..17 2080 100 Minus
CG6870-RA 852 CG6870-RA 187..602 432..17 2080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17591698..17592113 17..432 2080 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:02:12 has no hits.

BS13403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:25 Download gff for BS13403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:44 Download gff for BS13403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 17..432 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:32 Download gff for BS13403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 17..432 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:32 Download gff for BS13403.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17591698..17592113 17..432 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:44 Download gff for BS13403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17591698..17592113 17..432 100   Plus

BS13403.5prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-13

> BS13403.5prime
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCAACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAATAAAAGCTTTCTAGACC

BS13403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-PA 414 CG6870-RA 1..414 17..430 2045 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 985 CG6870-RB 187..602 15..430 2065 99.8 Plus
CG6870-RA 852 CG6870-RA 187..602 15..430 2065 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17591698..17592113 430..15 2065 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 03:46:50 has no hits.

BS13403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:25 Download gff for BS13403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-PA 1..414 17..430 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:30 Download gff for BS13403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 15..430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:05 Download gff for BS13403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 15..430 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:05 Download gff for BS13403.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17591698..17592113 15..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:30 Download gff for BS13403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17591698..17592113 15..430 99   Minus

BS13403.complete Sequence

446 bp assembled on 2006-11-01

GenBank Submission: FJ637436

> BS13403.complete
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCGACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAATAAAAGCTTTCTAGACCAT

BS13403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 414 CG6870-PB 1..414 17..430 2070 100 Plus
CG6870-RA 414 CG6870-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 985 CG6870-RB 187..602 15..430 2080 100 Plus
CG6870-RA 852 CG6870-RA 187..602 15..430 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17591698..17592113 430..15 2080 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:01:47 has no hits.

BS13403.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:04 Download gff for BS13403.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:56 Download gff for BS13403.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 186..601 15..430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:41 Download gff for BS13403.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 189..600 17..428 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:04 Download gff for BS13403.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 186..601 15..430 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:43 Download gff for BS13403.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 189..600 17..428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:43 Download gff for BS13403.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17591700..17592111 17..428 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:41 Download gff for BS13403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17591700..17592111 17..428 100   Minus

BS13403.pep Sequence

Translation from 16 to 429

> BS13403.pep
MSSALTNLLQSLRIVPLGHGKSSNQVVVVPSKKERLKLEDLPEIALEEVA
QHDSFDDCWVVIYDRVYDVTHFLRDHPGGDDVIMDHAGRDATIAFHGTGH
SGDAIEMMKDFLIGQLPTKQHIFRTGKNKVLSLGIPE*

BS13403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-PB 137 CG6870-PB 1..137 1..137 716 100 Plus
CG6870-PA 137 CG6870-PA 1..137 1..137 716 100 Plus
CG3566-PC 89 CG3566-PC 4..77 43..116 205 52.7 Plus
CG3566-PD 106 CG3566-PD 4..77 43..116 205 52.7 Plus
CG3566-PB 117 CG3566-PB 4..77 43..116 205 52.7 Plus