Clone Sequence Records
BS13403.3prime Sequence
444 bp (444 high quality bases) assembled on 2006-10-13
> BS13403.3prime
ATGGTCTAGAAAGCTTTTATTCCGGTATGCCCAGGGACAAAACCTTGTTT
TTGCCAGTGCGAAAAATGTGCTGCTTGGTGGGCAGTTGACCGATCAAGAA
ATCCTTCATCATTTCGATGGCATCCCCCGAGTGTCCTGTGCCATGGAAGG
CGATGGTGGCATCTCGCCCTGCGTGATCCATAATGACGTCGTCGCCGCCG
GGATGATCCCTTAGAAAGTGTGTCACATCGTAGACCCTATCGTAGATTAC
CACCCAGCAATCGTCGAAGCTGTCGTGCTGGGCCACCTCCTCCAATGCGA
TCTCCGGCAGATCTTCCAGTTTTAAACGTTCCTTTTTGCTTGGTACAACG
ACCACCTGATTACTGGACTTTCCATGTCCCAAGGGCACAATTCTCAGCGA
TTGCAAGAGGTTCGTCAACGCGGATGACATGTCGACTGATAACT
BS13403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-PA | 414 | CG6870-RA | 1..414 | 430..17 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 985 | CG6870-RB | 187..602 | 432..17 | 2080 | 100 | Minus |
CG6870-RA | 852 | CG6870-RA | 187..602 | 432..17 | 2080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17591698..17592113 | 17..432 | 2080 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:02:12 has no hits.
BS13403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:25 Download gff for
BS13403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-PA | 1..414 | 17..430 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:44 Download gff for
BS13403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 17..432 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:32 Download gff for
BS13403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 17..432 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:32 Download gff for
BS13403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17591698..17592113 | 17..432 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:44 Download gff for
BS13403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17591698..17592113 | 17..432 | 100 | | Plus |
BS13403.5prime Sequence
444 bp (444 high quality bases) assembled on 2006-10-13
> BS13403.5prime
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCAACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAATAAAAGCTTTCTAGACC
BS13403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-PA | 414 | CG6870-RA | 1..414 | 17..430 | 2045 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 985 | CG6870-RB | 187..602 | 15..430 | 2065 | 99.8 | Plus |
CG6870-RA | 852 | CG6870-RA | 187..602 | 15..430 | 2065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17591698..17592113 | 430..15 | 2065 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:46:50 has no hits.
BS13403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:25 Download gff for
BS13403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-PA | 1..414 | 17..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:30 Download gff for
BS13403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 15..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:05 Download gff for
BS13403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 15..430 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:05 Download gff for
BS13403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17591698..17592113 | 15..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:30 Download gff for
BS13403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17591698..17592113 | 15..430 | 99 | | Minus |
BS13403.complete Sequence
446 bp assembled on 2006-11-01
GenBank Submission: FJ637436
> BS13403.complete
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCGACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAATAAAAGCTTTCTAGACCAT
BS13403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 414 | CG6870-PB | 1..414 | 17..430 | 2070 | 100 | Plus |
CG6870-RA | 414 | CG6870-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 985 | CG6870-RB | 187..602 | 15..430 | 2080 | 100 | Plus |
CG6870-RA | 852 | CG6870-RA | 187..602 | 15..430 | 2080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17591698..17592113 | 430..15 | 2080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:01:47 has no hits.
BS13403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:04 Download gff for
BS13403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:56 Download gff for
BS13403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 186..601 | 15..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:41 Download gff for
BS13403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 189..600 | 17..428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:04 Download gff for
BS13403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 186..601 | 15..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:43 Download gff for
BS13403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 189..600 | 17..428 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:43 Download gff for
BS13403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17591700..17592111 | 17..428 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:41 Download gff for
BS13403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17591700..17592111 | 17..428 | 100 | | Minus |
BS13403.pep Sequence
Translation from 16 to 429
> BS13403.pep
MSSALTNLLQSLRIVPLGHGKSSNQVVVVPSKKERLKLEDLPEIALEEVA
QHDSFDDCWVVIYDRVYDVTHFLRDHPGGDDVIMDHAGRDATIAFHGTGH
SGDAIEMMKDFLIGQLPTKQHIFRTGKNKVLSLGIPE*
BS13403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-PB | 137 | CG6870-PB | 1..137 | 1..137 | 716 | 100 | Plus |
CG6870-PA | 137 | CG6870-PA | 1..137 | 1..137 | 716 | 100 | Plus |
CG3566-PC | 89 | CG3566-PC | 4..77 | 43..116 | 205 | 52.7 | Plus |
CG3566-PD | 106 | CG3566-PD | 4..77 | 43..116 | 205 | 52.7 | Plus |
CG3566-PB | 117 | CG3566-PB | 4..77 | 43..116 | 205 | 52.7 | Plus |