Clone Sequence Records
BS13404.3prime Sequence
609 bp (609 high quality bases) assembled on 2006-10-13
> BS13404.3prime
ATGGTCTAGAAAGCTTTTAGTGGTAGCCCAGGGGCGAGAGGGCGGGCAGG
GCCAGCTTGGGCAGAGCAGGTCCATAGGCGGGAGCCAGAGCCGGTCCGTA
TCCGTGGGCCAGAGCCGGGTAAGCGGGCGCCAGAGCCGGACCATAGGCGG
GCACCTTGGCCACCAGAGGAGAGGCATGGAGCAGCGGAGCCGGGGCCAGA
ACCTTGGCCACCGGAGCCACAGCCTTCACCACAGCTCCCTCGCGGCGCAC
CACTGCGTTGAATCCGTGCACGGGATCGGCGGTGTACTCCACAATGCGGC
GGGTTCCGTCGGCCTCAATCAGTGAATAGGCGCCCTGCACCACATCTCCG
CTGCGGGTCTCCTGCTGGCTCTTCACGTCACCAGTGGAGCCATCATGAAC
ATCGTAGCTGAAGGTGTATTGGGGATTGGGATCGTATGGCTCCGGACCCG
CCACCTTGGCCACCAGAGGAGCAGCCACCTTGGCCAGCGCCGGGTACGAT
GGATAGGCGGGCAGTGCCAGTCCGGGACCAGGGACCACAACGGCGGAGGA
CACCGCCACCAGGGCGCTCAGGACGAGGATCAGTTTCTGTGCCATGTCGA
CTGATAACT
BS13404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15006-PA | 579 | CG15006-RA | 1..579 | 595..17 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 1014 | CG15006-RA | 87..665 | 595..17 | 2895 | 100 | Minus |
Ccp84Ag-RA | 1097 | CG2342-RA | 152..349 | 436..239 | 315 | 77.9 | Minus |
Cpr92A-RA | 1120 | CG6240-RA | 282..496 | 459..245 | 205 | 73.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4208187..4208564 | 17..394 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 4208891..4209092 | 394..595 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 6687094..6687291 | 436..239 | 315 | 77.3 | Minus |
3R | 32079331 | 3R | 19598126..19598340 | 245..459 | 205 | 73 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:01 has no hits.
BS13404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:25 Download gff for
BS13404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15006-PA | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:33 Download gff for
BS13404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..665 | 17..605 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:19 Download gff for
BS13404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..665 | 17..605 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:19 Download gff for
BS13404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4208892..4209103 | 395..605 | 98 | | Plus |
3L | 4208187..4208564 | 17..394 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:33 Download gff for
BS13404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4208187..4208564 | 17..394 | 100 | <- | Plus |
arm_3L | 4208892..4209103 | 395..605 | 98 | | Plus |
BS13404.5prime Sequence
609 bp (609 high quality bases) assembled on 2006-10-13
> BS13404.5prime
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACTAAAAGCT
TTCTAGACC
BS13404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15006-PA | 579 | CG15006-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 1014 | CG15006-RA | 87..665 | 17..595 | 2895 | 100 | Plus |
Ccp84Ag-RA | 1097 | CG2342-RA | 152..349 | 176..373 | 315 | 77.9 | Plus |
Cpr92A-RA | 1120 | CG6240-RA | 282..496 | 153..367 | 205 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4208187..4208564 | 595..218 | 1890 | 100 | Minus |
3L | 28110227 | 3L | 4208891..4209092 | 218..17 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 6687094..6687291 | 176..373 | 315 | 77.3 | Plus |
3R | 32079331 | 3R | 19598126..19598340 | 367..153 | 205 | 73 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:47:10 has no hits.
BS13404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:26 Download gff for
BS13404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15006-PA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:36 Download gff for
BS13404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..665 | 7..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:32 Download gff for
BS13404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 76..665 | 7..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:32 Download gff for
BS13404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4208187..4208564 | 218..595 | 100 | <- | Minus |
3L | 4208892..4209103 | 7..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:36 Download gff for
BS13404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4208187..4208564 | 218..595 | 100 | <- | Minus |
arm_3L | 4208892..4209103 | 7..217 | 98 | | Minus |
BS13404.complete Sequence
611 bp assembled on 2006-11-01
GenBank Submission: FJ637437
> BS13404.complete
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACTAAAAGCT
TTCTAGACCAT
BS13404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 579 | CG15006-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Ccp84Ag-RA | 576 | CG2342-PA | 106..303 | 176..373 | 315 | 77.3 | Plus |
Cpr92A-RA | 738 | CG6240-PA | 161..375 | 153..367 | 205 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-RA | 1014 | CG15006-RA | 87..665 | 17..595 | 2895 | 100 | Plus |
Ccp84Ag-RA | 1097 | CG2342-RA | 152..349 | 176..373 | 315 | 77.3 | Plus |
Cpr92A-RA | 1120 | CG6240-RA | 282..496 | 153..367 | 205 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4208187..4208564 | 595..218 | 1890 | 100 | Minus |
3L | 28110227 | 3L | 4208891..4209092 | 218..17 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 6687094..6687291 | 176..373 | 315 | 77.3 | Plus |
3R | 32079331 | 3R | 19598126..19598340 | 367..153 | 205 | 73 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:46 has no hits.
BS13404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:37 Download gff for
BS13404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:10 Download gff for
BS13404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 84..673 | 7..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:41 Download gff for
BS13404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 87..663 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:37 Download gff for
BS13404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 84..673 | 7..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:14 Download gff for
BS13404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr64Aa-RA | 87..663 | 17..593 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:14 Download gff for
BS13404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4208189..4208564 | 218..593 | 100 | <- | Minus |
3L | 4208892..4209092 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:41 Download gff for
BS13404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4208189..4208564 | 218..593 | 100 | <- | Minus |
arm_3L | 4208892..4209092 | 17..217 | 100 | | Minus |
BS13404.pep Sequence
Translation from 16 to 594
> BS13404.pep
MAQKLILVLSALVAVSSAVVVPGPGLALPAYPSYPALAKVAAPLVAKVAG
PEPYDPNPQYTFSYDVHDGSTGDVKSQQETRSGDVVQGAYSLIEADGTRR
IVEYTADPVHGFNAVVRREGAVVKAVAPVAKVLAPAPLLHASPLVAKVPA
YGPALAPAYPALAHGYGPALAPAYGPALPKLALPALSPLGYH*
BS13404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr64Aa-PA | 192 | CG15006-PA | 1..192 | 1..192 | 980 | 100 | Plus |
Cpr92A-PA | 245 | CG6240-PA | 4..213 | 6..192 | 394 | 45.4 | Plus |
Ccp84Ag-PA | 191 | CG2342-PA | 1..188 | 1..187 | 354 | 47.1 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 1..177 | 1..176 | 341 | 49.2 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 1..177 | 1..176 | 332 | 48.1 | Plus |