Clone BS13404 Report

Search the DGRC for BS13404

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCpr64Aa-RA
Protein status:BS13404.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13404.3prime Sequence

609 bp (609 high quality bases) assembled on 2006-10-13

> BS13404.3prime
ATGGTCTAGAAAGCTTTTAGTGGTAGCCCAGGGGCGAGAGGGCGGGCAGG
GCCAGCTTGGGCAGAGCAGGTCCATAGGCGGGAGCCAGAGCCGGTCCGTA
TCCGTGGGCCAGAGCCGGGTAAGCGGGCGCCAGAGCCGGACCATAGGCGG
GCACCTTGGCCACCAGAGGAGAGGCATGGAGCAGCGGAGCCGGGGCCAGA
ACCTTGGCCACCGGAGCCACAGCCTTCACCACAGCTCCCTCGCGGCGCAC
CACTGCGTTGAATCCGTGCACGGGATCGGCGGTGTACTCCACAATGCGGC
GGGTTCCGTCGGCCTCAATCAGTGAATAGGCGCCCTGCACCACATCTCCG
CTGCGGGTCTCCTGCTGGCTCTTCACGTCACCAGTGGAGCCATCATGAAC
ATCGTAGCTGAAGGTGTATTGGGGATTGGGATCGTATGGCTCCGGACCCG
CCACCTTGGCCACCAGAGGAGCAGCCACCTTGGCCAGCGCCGGGTACGAT
GGATAGGCGGGCAGTGCCAGTCCGGGACCAGGGACCACAACGGCGGAGGA
CACCGCCACCAGGGCGCTCAGGACGAGGATCAGTTTCTGTGCCATGTCGA
CTGATAACT

BS13404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15006-PA 579 CG15006-RA 1..579 595..17 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 1014 CG15006-RA 87..665 595..17 2895 100 Minus
Ccp84Ag-RA 1097 CG2342-RA 152..349 436..239 315 77.9 Minus
Cpr92A-RA 1120 CG6240-RA 282..496 459..245 205 73.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4208187..4208564 17..394 1890 100 Plus
3L 28110227 3L 4208891..4209092 394..595 1010 100 Plus
3R 32079331 3R 6687094..6687291 436..239 315 77.3 Minus
3R 32079331 3R 19598126..19598340 245..459 205 73 Plus
Blast to na_te.dros performed on 2015-02-12 03:47:01 has no hits.

BS13404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:25 Download gff for BS13404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15006-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:33 Download gff for BS13404.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..665 17..605 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:19 Download gff for BS13404.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..665 17..605 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:19 Download gff for BS13404.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4208892..4209103 395..605 98   Plus
3L 4208187..4208564 17..394 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:33 Download gff for BS13404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4208187..4208564 17..394 100 <- Plus
arm_3L 4208892..4209103 395..605 98   Plus

BS13404.5prime Sequence

609 bp (609 high quality bases) assembled on 2006-10-13

> BS13404.5prime
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACTAAAAGCT
TTCTAGACC

BS13404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15006-PA 579 CG15006-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 1014 CG15006-RA 87..665 17..595 2895 100 Plus
Ccp84Ag-RA 1097 CG2342-RA 152..349 176..373 315 77.9 Plus
Cpr92A-RA 1120 CG6240-RA 282..496 153..367 205 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4208187..4208564 595..218 1890 100 Minus
3L 28110227 3L 4208891..4209092 218..17 1010 100 Minus
3R 32079331 3R 6687094..6687291 176..373 315 77.3 Plus
3R 32079331 3R 19598126..19598340 367..153 205 73 Minus
Blast to na_te.dros performed on 2015-02-12 03:47:10 has no hits.

BS13404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:26 Download gff for BS13404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15006-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:36 Download gff for BS13404.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..665 7..595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:32 Download gff for BS13404.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 76..665 7..595 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:32 Download gff for BS13404.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4208187..4208564 218..595 100 <- Minus
3L 4208892..4209103 7..217 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:36 Download gff for BS13404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4208187..4208564 218..595 100 <- Minus
arm_3L 4208892..4209103 7..217 98   Minus

BS13404.complete Sequence

611 bp assembled on 2006-11-01

GenBank Submission: FJ637437

> BS13404.complete
GAAGTTATCAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCC
TGGTGGCGGTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTG
CCCGCCTATCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGT
GGCCAAGGTGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCT
TCAGCTACGATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAG
GAGACCCGCAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGC
CGACGGAACCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGAT
TCAACGCAGTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCG
GTGGCCAAGGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGT
GGCCAAGGTGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTC
TGGCCCACGGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTG
CCCAAGCTGGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACTAAAAGCT
TTCTAGACCAT

BS13404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 579 CG15006-PA 1..579 17..595 2895 100 Plus
Ccp84Ag-RA 576 CG2342-PA 106..303 176..373 315 77.3 Plus
Cpr92A-RA 738 CG6240-PA 161..375 153..367 205 73 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-RA 1014 CG15006-RA 87..665 17..595 2895 100 Plus
Ccp84Ag-RA 1097 CG2342-RA 152..349 176..373 315 77.3 Plus
Cpr92A-RA 1120 CG6240-RA 282..496 153..367 205 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4208187..4208564 595..218 1890 100 Minus
3L 28110227 3L 4208891..4209092 218..17 1010 100 Minus
3R 32079331 3R 6687094..6687291 176..373 315 77.3 Plus
3R 32079331 3R 19598126..19598340 367..153 205 73 Minus
Blast to na_te.dros performed on 2014-11-28 00:02:46 has no hits.

BS13404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:37 Download gff for BS13404.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:10 Download gff for BS13404.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 84..673 7..595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:41 Download gff for BS13404.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 87..663 17..593 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:37 Download gff for BS13404.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 84..673 7..595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:14 Download gff for BS13404.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr64Aa-RA 87..663 17..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:14 Download gff for BS13404.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4208189..4208564 218..593 100 <- Minus
3L 4208892..4209092 17..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:41 Download gff for BS13404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4208189..4208564 218..593 100 <- Minus
arm_3L 4208892..4209092 17..217 100   Minus

BS13404.pep Sequence

Translation from 16 to 594

> BS13404.pep
MAQKLILVLSALVAVSSAVVVPGPGLALPAYPSYPALAKVAAPLVAKVAG
PEPYDPNPQYTFSYDVHDGSTGDVKSQQETRSGDVVQGAYSLIEADGTRR
IVEYTADPVHGFNAVVRREGAVVKAVAPVAKVLAPAPLLHASPLVAKVPA
YGPALAPAYPALAHGYGPALAPAYGPALPKLALPALSPLGYH*

BS13404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr64Aa-PA 192 CG15006-PA 1..192 1..192 980 100 Plus
Cpr92A-PA 245 CG6240-PA 4..213 6..192 394 45.4 Plus
Ccp84Ag-PA 191 CG2342-PA 1..188 1..187 354 47.1 Plus
Ccp84Ad-PA 199 CG2341-PA 1..177 1..176 341 49.2 Plus
Ccp84Aa-PA 205 CG2360-PA 1..177 1..176 332 48.1 Plus