Clone Sequence Records
BS13405.3prime Sequence
652 bp (570 high quality bases) assembled on 2006-10-13
> BS13405.3prime
ATGGTCTAGAAAGCTTTTAGAAACCCTGGAAACTCCGGCGGAACTCTTCC
TCGAAATCCGCGTGGCCAAGATCAAGCTTGTGGTAGTCGGTGAATCCCTC
GCGATCCAGCTTGGCCTGGGCCCAAAGGATTAGCTTGATGAGGAACATCA
TTCTTGGCTCCATGGGCTCCTCTTTGCTCTTACTCTCATCCTCGTGGCAG
CGTAACATGGCTGCATTCATTTCACCGGCCACCTTTTGGCGATATGAGTA
GTACATCAGCTCCCCGTAGGGACTGTATTCCGGCCGATCGAAGGCCAGCA
GACCCATGGTCCGCTCCACTTCGTGGTAGTGACTTGGATCGACCTTGGAA
AAGCCCGCTGCCTTGCTCTGGGCAAACTTCAAGGCCTTCTCCATCTTCTG
ATCCCTGATCATCTCGATCAGGCGCAACTGTTGCATGTGAAAAAATACAT
AGTTGTCGGTCTCGAAGAGCCGTGGATAGATCCGTGTGGCCAGGTCCATG
GCGTACTTGACCTGACCCACACGCACGGCATCCTGAATCCTTAAACGATC
CCCGATGGTGTCCATGTGTGGACCCGGCTTCACAGACGCCTCGGTCATGA
AACGCTTGGCGGCCTCTTGATATCCCTCTGTAACCAGATAGTTCATCCCC
CA
BS13405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-PA | 714 | CG18467-RA | 84..714 | 647..17 | 3155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-RA | 1462 | CG18467-RA | 632..1262 | 647..17 | 3155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17441671..17442283 | 629..17 | 3065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:36:06 has no hits.
BS13405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:26 Download gff for
BS13405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-PA | 80..714 | 17..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:19 Download gff for
BS13405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 628..1262 | 17..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:53 Download gff for
BS13405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 628..1262 | 17..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:53 Download gff for
BS13405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17441594..17441617 | 628..651 | 91 | -> | Minus |
| 2R | 17441673..17442283 | 17..627 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:19 Download gff for
BS13405.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13329099..13329122 | 628..651 | 91 | -> | Minus |
| arm_2R | 13329178..13329788 | 17..627 | 100 | | Minus |
BS13405.5prime Sequence
631 bp (592 high quality bases) assembled on 2006-10-13
> BS13405.5prime
GAAGTTATCAGTCGACATGGCCGAGTATAGACCATCCACTTCGTGGCCCC
ATCGGATGATGAGCTTCCAGTGCCGGCAGGCGGACCTGAATCGCCTGGTG
ATGAACTATCTGGTTACAGAGGGATATCAAGAGGCCGCCAAGCGTTTCAT
GACCGAGGCGTCTGTGAAGCCGGGTCCACACATGGACACCATCGGGGATC
GTTTAAGGATTCAGGATGCCGTGCGTGTGGGTCAGGTCAAGTACGCCATG
GACCTGGCCACACGGATCTATCCACGGCTCTTCGAGACCGACAACTATGT
ATTTTTTCACATGCAACAGTTGCGCCTGATCGAGATGATCAGGGATCAGA
AGATGGAGAAGGCCTTGAAGTTTGCCCAGAGCAAGGCAGCGGGCTTTTCC
AAGGTCGATCCAAGTCACTACCACGAAGTGGAGCGGACCATGGGTCTGCT
GGCCTTCGATCGGCCGGAATACAGTCCCTACGGGGAGCTGATGTACTACT
CATATCGCCAAAAGGTGGCCGGTGAAATGAATGCAGCCATGTTACGCTGC
CACGAGGATGAGAGTAAGAGCAAAGAGGAGCCCATGGAGCCAAGAATGAT
GTTCCTCATCAAGCTAATCCTTTGGGCCCAG
BS13405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-PA | 714 | CG18467-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-RA | 1462 | CG18467-RA | 549..1163 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17441671..17442184 | 118..631 | 2570 | 100 | Plus |
| 2R | 25286936 | 2R | 17441515..17441617 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:41:51 has no hits.
BS13405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:26 Download gff for
BS13405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:07 Download gff for
BS13405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 547..1163 | 14..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:42 Download gff for
BS13405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 547..1163 | 14..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:42 Download gff for
BS13405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17441513..17441617 | 14..119 | 99 | -> | Plus |
| 2R | 17441673..17442184 | 120..631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:07 Download gff for
BS13405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13329018..13329122 | 14..119 | 99 | -> | Plus |
| arm_2R | 13329178..13329689 | 120..631 | 100 | | Plus |
BS13405.complete Sequence
746 bp assembled on 2006-11-01
GenBank Submission: FJ637438
> BS13405.complete
GAAGTTATCAGTCGACATGGCCGAGTATAGACCATCCACTTCGTGGCCCC
ATCGGATGATGAGCTTCCAGTGCCGGCAGGCGGACCTGAATCGCCTGGTG
ATGAACTATCTGGTTACAGAGGGATATCAAGAGGCCGCCAAGCGTTTCAT
GACCGAGGCGTCTGTGAAGCCGGGTCCACACATGGACACCATCGGGGATC
GTTTAAGGATTCAGGATGCCGTGCGTGTGGGTCAGGTCAAGTACGCCATG
GACCTGGCCACACGGATCTATCCACGGCTCTTCGAGACCGACAACTATGT
ATTTTTTCACATGCAACAGTTGCGCCTGATCGAGATGATCAGGGATCAGA
AGATGGAGAAGGCCTTGAAGTTTGCCCAGAGCAAGGCAGCGGGCTTTTCC
AAGGTCGATCCAAGTCACTACCACGAAGTGGAGCGGACCATGGGTCTGCT
GGCCTTCGATCGGCCGGAATACAGTCCCTACGGGGAGCTGATGTACTACT
CATATCGCCAAAAGGTGGCCGGTGAAATGAATGCAGCCATGTTACGCTGC
CACGAGGATGAGAGTAAGAGCAAAGAGGAGCCCATGGAGCCAAGAATGAT
GTTCCTCATCAAGCTAATCCTTTGGGCCCAGGCCAAGCTGGATCGCGAGG
GATTCACCGACTACCACAAGCTTGATCTTGGCCACGCGGATTTCGAGGAA
GAGTTCCGCCGGAGTTTCCAGGGTTTCTAAAAGCTTTCTAGACCAT
BS13405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-RA | 714 | CG18467-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-RA | 1462 | CG18467-RA | 549..1262 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17441671..17442283 | 118..730 | 3065 | 100 | Plus |
| 2R | 25286936 | 2R | 17441515..17441617 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:58:00 has no hits.
BS13405.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:21 Download gff for
BS13405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:01 Download gff for
BS13405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 240..955 | 14..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:08 Download gff for
BS13405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 549..1260 | 17..728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:22 Download gff for
BS13405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 240..955 | 14..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:15 Download gff for
BS13405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 549..1260 | 17..728 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:15 Download gff for
BS13405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17441515..17441617 | 17..119 | 100 | -> | Plus |
| 2R | 17441673..17442281 | 120..728 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:08 Download gff for
BS13405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13329020..13329122 | 17..119 | 100 | -> | Plus |
| arm_2R | 13329178..13329786 | 120..728 | 100 | | Plus |
BS13405.pep Sequence
Translation from 16 to 729
> BS13405.pep
MAEYRPSTSWPHRMMSFQCRQADLNRLVMNYLVTEGYQEAAKRFMTEASV
KPGPHMDTIGDRLRIQDAVRVGQVKYAMDLATRIYPRLFETDNYVFFHMQ
QLRLIEMIRDQKMEKALKFAQSKAAGFSKVDPSHYHEVERTMGLLAFDRP
EYSPYGELMYYSYRQKVAGEMNAAMLRCHEDESKSKEEPMEPRMMFLIKL
ILWAQAKLDREGFTDYHKLDLGHADFEEEFRRSFQGF*
BS13405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-PA | 237 | CG18467-PA | 1..237 | 1..237 | 1251 | 100 | Plus |
| CG6617-PA | 225 | CG6617-PA | 15..205 | 10..209 | 504 | 48 | Plus |
