Clone BS13406 Report

Search the DGRC for BS13406

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG6426-RA
Protein status:BS13406.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13406.3prime Sequence

516 bp (516 high quality bases) assembled on 2006-10-13

> BS13406.3prime
ATGGTCTAGAAAGCTTTTATATGCTAGAGCGCACGTCGATCTGCTGGAAC
GAATTAAGGCAGTTGGTCAGCTGCGTCTGGTACTGGTAGCTCAGCTCGCC
CTTGCATCCATAGCCGCCCAGCTTGTGGATGGCAGCAAAGTCGTAGCAAT
CGATGGCGTTGTCTCCATTGCAGTCCTGGCCGAACTTGGTCATGTAATTC
TGGATCGTGTTGGCCGCGCAGTAGGGATCGTTCACGCAATTGGCATACGC
ATCCTCCGACTGGGGACTCTCGTTGCCCAAGGTCAGCTTGCCGCCGTCGG
CCCAATATGCCCAGGTGATGCGAAACAGGCCGCAGACTCCGCCGCCGCAG
TAACGTGTCTGGTTGCATCCACTGATGGCCTCACAGATGCATCCCAGGCA
CACATCAGTCACCGGCTTATCCTGAGCTTGAATGAGGGCTGCGAATCCCA
GACACAAAAGAGCGCCAATAGCCAAAGTGCAGCACAATTTGTTGGCAGCC
ATGTCGACTGATAACT

BS13406.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-PA 486 CG6426-RA 1..486 502..17 2405 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 713 CG6426-RA 120..606 502..16 2420 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16871510..16871744 250..16 1175 100 Minus
2R 25286936 2R 16871269..16871440 421..250 845 99.4 Minus
2R 25286936 2R 16869521..16869602 502..421 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:37:25 has no hits.

BS13406.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:27 Download gff for BS13406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-PA 1..486 17..502 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:04 Download gff for BS13406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..612 10..502 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:52 Download gff for BS13406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..612 10..502 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:52 Download gff for BS13406.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16869521..16869602 421..502 100 -> Minus
2R 16871270..16871440 250..420 99 -> Minus
2R 16871511..16871750 10..249 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:04 Download gff for BS13406.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12759016..12759255 10..249 98   Minus
arm_2R 12757026..12757107 421..502 100 -> Minus
arm_2R 12758775..12758945 250..420 99 -> Minus

BS13406.5prime Sequence

516 bp (492 high quality bases) assembled on 2006-10-13

> BS13406.5prime
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAT
AAAAGCTTTCTAGACC

BS13406.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-PA 486 CG6426-RA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 713 CG6426-RA 120..606 17..503 2435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16871510..16871744 269..503 1175 100 Plus
2R 25286936 2R 16871269..16871440 98..269 860 100 Plus
2R 25286936 2R 16869521..16869602 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:36:32 has no hits.

BS13406.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:27 Download gff for BS13406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-PA 1..486 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:23 Download gff for BS13406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..612 17..509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:55 Download gff for BS13406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..612 17..509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:55 Download gff for BS13406.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16869521..16869602 17..98 100 -> Plus
2R 16871270..16871440 99..269 100 -> Plus
2R 16871511..16871750 270..509 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:23 Download gff for BS13406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12757026..12757107 17..98 100 -> Plus
arm_2R 12758775..12758945 99..269 100 -> Plus
arm_2R 12759016..12759255 270..509 98   Plus

BS13406.complete Sequence

518 bp assembled on 2006-11-01

GenBank Submission: FJ637439

> BS13406.complete
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAT
AAAAGCTTTCTAGACCAT

BS13406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 486 CG6426-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 713 CG6426-RA 120..606 17..503 2435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16871510..16871744 269..503 1175 100 Plus
2R 25286936 2R 16871269..16871440 98..269 860 100 Plus
2R 25286936 2R 16869521..16869602 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:46:06 has no hits.

BS13406.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:23 Download gff for BS13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 1..486 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:03 Download gff for BS13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 130..622 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:58 Download gff for BS13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..603 17..500 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:23 Download gff for BS13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 130..622 17..509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:06 Download gff for BS13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..603 17..500 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:06 Download gff for BS13406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16869521..16869602 17..98 100 -> Plus
2R 16871270..16871440 99..269 100 -> Plus
2R 16871511..16871741 270..500 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:58 Download gff for BS13406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12757026..12757107 17..98 100 -> Plus
arm_2R 12758775..12758945 99..269 100 -> Plus
arm_2R 12759016..12759246 270..500 100   Plus

BS13406.pep Sequence

Translation from 16 to 501

> BS13406.pep
MAANKLCCTLAIGALLCLGFAALIQAQDKPVTDVCLGCICEAISGCNQTR
YCGGGVCGLFRITWAYWADGGKLTLGNESPQSEDAYANCVNDPYCAANTI
QNYMTKFGQDCNGDNAIDCYDFAAIHKLGGYGCKGELSYQYQTQLTNCLN
SFQQIDVRSSI*

BS13406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-PA 161 CG6426-PA 1..161 1..161 894 100 Plus
CG6421-PA 161 CG6421-PA 11..156 15..153 448 52.7 Plus
CG6435-PA 163 CG6435-PA 19..149 25..155 438 55.7 Plus
CG6429-PA 159 CG6429-PA 20..157 24..160 425 49.3 Plus
CG14823-PA 263 CG14823-PA 164..257 57..149 162 34.4 Plus