Clone Sequence Records
BS13406.3prime Sequence
516 bp (516 high quality bases) assembled on 2006-10-13
> BS13406.3prime
ATGGTCTAGAAAGCTTTTATATGCTAGAGCGCACGTCGATCTGCTGGAAC
GAATTAAGGCAGTTGGTCAGCTGCGTCTGGTACTGGTAGCTCAGCTCGCC
CTTGCATCCATAGCCGCCCAGCTTGTGGATGGCAGCAAAGTCGTAGCAAT
CGATGGCGTTGTCTCCATTGCAGTCCTGGCCGAACTTGGTCATGTAATTC
TGGATCGTGTTGGCCGCGCAGTAGGGATCGTTCACGCAATTGGCATACGC
ATCCTCCGACTGGGGACTCTCGTTGCCCAAGGTCAGCTTGCCGCCGTCGG
CCCAATATGCCCAGGTGATGCGAAACAGGCCGCAGACTCCGCCGCCGCAG
TAACGTGTCTGGTTGCATCCACTGATGGCCTCACAGATGCATCCCAGGCA
CACATCAGTCACCGGCTTATCCTGAGCTTGAATGAGGGCTGCGAATCCCA
GACACAAAAGAGCGCCAATAGCCAAAGTGCAGCACAATTTGTTGGCAGCC
ATGTCGACTGATAACT
BS13406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-PA | 486 | CG6426-RA | 1..486 | 502..17 | 2405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 713 | CG6426-RA | 120..606 | 502..16 | 2420 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16871510..16871744 | 250..16 | 1175 | 100 | Minus |
2R | 25286936 | 2R | 16871269..16871440 | 421..250 | 845 | 99.4 | Minus |
2R | 25286936 | 2R | 16869521..16869602 | 502..421 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:37:25 has no hits.
BS13406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:27 Download gff for
BS13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-PA | 1..486 | 17..502 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:04 Download gff for
BS13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..612 | 10..502 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:52 Download gff for
BS13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..612 | 10..502 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:52 Download gff for
BS13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16869521..16869602 | 421..502 | 100 | -> | Minus |
2R | 16871270..16871440 | 250..420 | 99 | -> | Minus |
2R | 16871511..16871750 | 10..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:04 Download gff for
BS13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12759016..12759255 | 10..249 | 98 | | Minus |
arm_2R | 12757026..12757107 | 421..502 | 100 | -> | Minus |
arm_2R | 12758775..12758945 | 250..420 | 99 | -> | Minus |
BS13406.5prime Sequence
516 bp (492 high quality bases) assembled on 2006-10-13
> BS13406.5prime
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAT
AAAAGCTTTCTAGACC
BS13406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-PA | 486 | CG6426-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 713 | CG6426-RA | 120..606 | 17..503 | 2435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16871510..16871744 | 269..503 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 16871269..16871440 | 98..269 | 860 | 100 | Plus |
2R | 25286936 | 2R | 16869521..16869602 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:36:32 has no hits.
BS13406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:27 Download gff for
BS13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-PA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:23 Download gff for
BS13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..612 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:55 Download gff for
BS13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..612 | 17..509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:55 Download gff for
BS13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16869521..16869602 | 17..98 | 100 | -> | Plus |
2R | 16871270..16871440 | 99..269 | 100 | -> | Plus |
2R | 16871511..16871750 | 270..509 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:23 Download gff for
BS13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12757026..12757107 | 17..98 | 100 | -> | Plus |
arm_2R | 12758775..12758945 | 99..269 | 100 | -> | Plus |
arm_2R | 12759016..12759255 | 270..509 | 98 | | Plus |
BS13406.complete Sequence
518 bp assembled on 2006-11-01
GenBank Submission: FJ637439
> BS13406.complete
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAT
AAAAGCTTTCTAGACCAT
BS13406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 486 | CG6426-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 713 | CG6426-RA | 120..606 | 17..503 | 2435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16871510..16871744 | 269..503 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 16871269..16871440 | 98..269 | 860 | 100 | Plus |
2R | 25286936 | 2R | 16869521..16869602 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:46:06 has no hits.
BS13406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:23 Download gff for
BS13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:03 Download gff for
BS13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 130..622 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:58 Download gff for
BS13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..603 | 17..500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:23 Download gff for
BS13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 130..622 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:06 Download gff for
BS13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..603 | 17..500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:06 Download gff for
BS13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16869521..16869602 | 17..98 | 100 | -> | Plus |
2R | 16871270..16871440 | 99..269 | 100 | -> | Plus |
2R | 16871511..16871741 | 270..500 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:58 Download gff for
BS13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12757026..12757107 | 17..98 | 100 | -> | Plus |
arm_2R | 12758775..12758945 | 99..269 | 100 | -> | Plus |
arm_2R | 12759016..12759246 | 270..500 | 100 | | Plus |
BS13406.pep Sequence
Translation from 16 to 501
> BS13406.pep
MAANKLCCTLAIGALLCLGFAALIQAQDKPVTDVCLGCICEAISGCNQTR
YCGGGVCGLFRITWAYWADGGKLTLGNESPQSEDAYANCVNDPYCAANTI
QNYMTKFGQDCNGDNAIDCYDFAAIHKLGGYGCKGELSYQYQTQLTNCLN
SFQQIDVRSSI*
BS13406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-PA | 161 | CG6426-PA | 1..161 | 1..161 | 894 | 100 | Plus |
CG6421-PA | 161 | CG6421-PA | 11..156 | 15..153 | 448 | 52.7 | Plus |
CG6435-PA | 163 | CG6435-PA | 19..149 | 25..155 | 438 | 55.7 | Plus |
CG6429-PA | 159 | CG6429-PA | 20..157 | 24..160 | 425 | 49.3 | Plus |
CG14823-PA | 263 | CG14823-PA | 164..257 | 57..149 | 162 | 34.4 | Plus |