Clone BS13407 Report

Search the DGRC for BS13407

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG2837-RA
Protein status:BS13407.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13407.3prime Sequence

639 bp (555 high quality bases) assembled on 2006-10-13

> BS13407.3prime
ATGGTCTAGAAAGCTTCTAAGTGTCCGTCTCCAGACTGACATCCATAAGC
TCCTTGGTGATCTCAGATTTGCTCTTGAGAGGATCAGGATTGCTCAGCGT
ATTGGTATCCTGGCTAAGAGCAGGAGGTGGCAGCTTAAAGCCACTTGGAC
CACCCAAATTAAGGGATCCTCCTGTAAAGACAGGAGGCACTGTTGTGGTG
GTTGTGGTGCTCGAACTGGTGGCCATTTTGTAGAGCAACTGCAGCTGCTT
CATGGCACTGGTGGGATCTGTTGCCTGTGCATTCTGATAATTGCTTGAAG
AACTTTCTTTCACTGGTTTCTTGGCCTGATCCTTTGATTTGGGCTTCTGC
GGTTTCATGCCATTCGACCAGGCCTGCAGCCAGCTGGCCCCATTCCTCTC
CGTGGACGTCATCAATCTCTCCGCCTCCTCCATCACCTGCTGGCGATAAA
GTTGACGGGCCAGAGCCTTCTGATCGCTCTGGCTCACCTGGCGCTTGTTG
AACGATTGATCATCCTGGTTGGGCTCGCCGATGGGACGCGTCTCCTTCTG
GGGACCCAGTTCCACCATCACCTGAAAGTCCGCATGCTCGCCCAGGCGAA
AGCCAAAGCCCAAACGGGAATCAGTTCCCTTTTTAATCG

BS13407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2837-PA 768 CG2837-RA 146..768 639..17 3115 100 Minus
CG2837-PB 768 CG2837-RB 146..768 639..17 3115 100 Minus
CG2837-PC 768 CG2837-RC 146..768 639..17 3115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2837-RD 1089 CG2837-RD 314..936 639..17 3115 100 Minus
CG2837-RC 1231 CG2837-RC 251..873 639..17 3115 100 Minus
CG2837-RB 1011 CG2837-RB 236..858 639..17 3115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4904223..4904834 17..628 3060 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:36:45 has no hits.

BS13407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:28 Download gff for BS13407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2837-PC 146..768 17..639 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:25 Download gff for BS13407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2837-RB 236..861 11..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:57 Download gff for BS13407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2837-RB 236..861 11..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:57 Download gff for BS13407.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4904220..4904843 11..639 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:25 Download gff for BS13407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4904220..4904843 11..639 98   Plus

BS13407.5prime Sequence

609 bp (582 high quality bases) assembled on 2006-10-13

> BS13407.5prime
GAAGTTATCAGTCGACATGATGTCTTGGCCAAAACAATGGGGCTTCGCTA
GCCTCTGGCTGCCCGTGCTGATCGGCCTGCTCCACACACAAAATGCATCA
GCTTTTATTGTGCCCCGGGAACTGCCCTCCATCTTATCCATAGTTTACTC
CAATATACCACCGATTAAAAAGGGAACTGATTCCCGTTTGGGCTTTGGCT
TTCGCCTGGGCGAGCATGCGGACTTTCAGGTGATGGTGGAACTGGGTCCC
CAGAAGGAGACGCGTCCCATCGGCGAGCCCAACCAGGATGATCAATCGTT
CAACAAGCGCCAGGTGAGCCAGAGCGATCAGAAGGCTCTGGCCCGTCAAC
TTTATCGCCAGCAGGTGATGGAGGAGGCGGAGAGATTGATGACGTCCACG
GAGAGGAATGGGGCCAGCTGGCTGCAGGCCTGGTCGAATGGCATGAAACC
GCAGAAGCCCAAATCAAAGGATCAGGCCAAGAAACCAGTGAAAGAAAGTT
CTTCAAGCAATTATCAGAATGCACAGGCAACAGATCCCACCAGTGCCATG
AAGCAGCTGCAGTTGCTCTACAAAATGGCCACCAGTTCGAGCACCACAAC
CACCACAAC

BS13407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2837-PA 768 CG2837-RA 1..593 17..609 2965 100 Plus
CG2837-PB 768 CG2837-RB 1..593 17..609 2965 100 Plus
CG2837-PC 768 CG2837-RC 1..593 17..609 2965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2837-RD 1089 CG2837-RD 168..761 16..609 2970 100 Plus
CG2837-RC 1231 CG2837-RC 105..698 16..609 2970 100 Plus
CG2837-RB 1011 CG2837-RB 90..683 16..609 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4904398..4904834 609..173 2185 100 Minus
2L 23513712 2L 4904892..4904979 174..87 440 100 Minus
2L 23513712 2L 4905753..4905823 86..16 355 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:42:13 has no hits.

BS13407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:29 Download gff for BS13407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2837-PC 1..593 17..609 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:10 Download gff for BS13407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2837-RB 90..683 16..609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:45 Download gff for BS13407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2837-RB 90..683 16..609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:45 Download gff for BS13407.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4904893..4904979 87..173 100 <- Minus
2L 4905753..4905823 16..86 100   Minus
2L 4904398..4904833 174..609 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:10 Download gff for BS13407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4904398..4904833 174..609 100 <- Minus
arm_2L 4904893..4904979 87..173 100 <- Minus
arm_2L 4905753..4905823 16..86 100   Minus

BS13407.complete Sequence

800 bp assembled on 2006-11-01

GenBank Submission: FJ638853

> BS13407.complete
GAAGTTATCAGTCGACATGATGTCTTGGCCAAAACAATGGGGCTTCGCTA
GCCTCTGGCTGCCCGTGCTGATCGGCCTGCTCCACACACAAAATGCATCA
GCTTTTATTGTGCCCCGGGAACTGCCCTCCATCTTATCCATAGTTTACTC
CAATATACCACCGATTAAAAAGGGAACTGATTCCCGTTTGGGCTTTGGCT
TTCGCCTGGGCGAGCATGCGGACTTTCAGGTGATGGTGGAACTGGGTCCC
CAGAAGGAGACGCGTCCCATCGGCGAGCCCAACCAGGATGATCAATCGTT
CAACAAGCGCCAGGTGAGCCAGAGCGATCAGAAGGCTCTGGCCCGTCAAC
TTTATCGCCAGCAGGTGATGGAGGAGGCGGAGAGATTGATGACGTCCACG
GAGAGGAATGGGGCCAGCTGGCTGCAGGCCTGGTCGAATGGCATGAAACC
GCAGAAGCCCAAATCAAAGGATCAGGCCAAGAAACCAGTGAAAGAAAGTT
CTTCAAGCAATTATCAGAATGCACAGGCAACAGATCCCACCAGTGCCATG
AAGCAGCTGCAGTTGCTCTACAAAATGGCCACCAGTTCGAGCACCACAAC
CACCACAACAGTGCCTCCTGTCTTTACAGGAGGATCCCTTAATTTGGGTG
GTCCAAGTGGCTTTAAGCTGCCACCTCCTGCTCTTAGCCAGGATACCAAT
ACGCTGAGCAATCCTGATCCTCTCAAGAGCAAATCTGAGATCACCAAGGA
GCTTATGGATGTCAGTCTGGAGACGGACACTTAGAAGCTTTCTAGACCAT

BS13407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2837-RD 768 CG2837-PD 1..768 17..784 3840 100 Plus
CG2837-RC 768 CG2837-PC 1..768 17..784 3840 100 Plus
CG2837-RB 768 CG2837-PB 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2837-RD 1089 CG2837-RD 168..936 16..784 3845 100 Plus
CG2837-RC 1231 CG2837-RC 105..873 16..784 3845 100 Plus
CG2837-RB 1011 CG2837-RB 90..858 16..784 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4904223..4904834 784..173 3060 100 Minus
2L 23513712 2L 4904892..4904979 174..87 440 100 Minus
2L 23513712 2L 4905753..4905823 86..16 355 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:55:38 has no hits.

BS13407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:24 Download gff for BS13407.complete
Subject Subject Range Query Range Percent Splice Strand
CG2837-RC 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:05 Download gff for BS13407.complete
Subject Subject Range Query Range Percent Splice Strand
CG2837-RC 102..873 16..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:53 Download gff for BS13407.complete
Subject Subject Range Query Range Percent Splice Strand
CG2837-RB 91..858 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:24 Download gff for BS13407.complete
Subject Subject Range Query Range Percent Splice Strand
CG2837-RC 102..873 16..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:54 Download gff for BS13407.complete
Subject Subject Range Query Range Percent Splice Strand
CG2837-RB 91..858 17..784 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:54 Download gff for BS13407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4905753..4905822 17..86 100   Minus
2L 4904223..4904833 174..784 100 <- Minus
2L 4904893..4904979 87..173 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:53 Download gff for BS13407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4904223..4904833 174..784 100 <- Minus
arm_2L 4904893..4904979 87..173 100 <- Minus
arm_2L 4905753..4905822 17..86 100   Minus

BS13407.pep Sequence

Translation from 16 to 783

> BS13407.pep
MMSWPKQWGFASLWLPVLIGLLHTQNASAFIVPRELPSILSIVYSNIPPI
KKGTDSRLGFGFRLGEHADFQVMVELGPQKETRPIGEPNQDDQSFNKRQV
SQSDQKALARQLYRQQVMEEAERLMTSTERNGASWLQAWSNGMKPQKPKS
KDQAKKPVKESSSSNYQNAQATDPTSAMKQLQLLYKMATSSSTTTTTTVP
PVFTGGSLNLGGPSGFKLPPPALSQDTNTLSNPDPLKSKSEITKELMDVS
LETDT*

BS13407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2837-PD 255 CG2837-PD 1..255 1..255 1318 100 Plus
CG2837-PC 255 CG2837-PC 1..255 1..255 1318 100 Plus
CG2837-PB 255 CG2837-PB 1..255 1..255 1318 100 Plus
CG2837-PA 255 CG2837-PA 1..255 1..255 1318 100 Plus