Clone Sequence Records
BS13407.3prime Sequence
639 bp (555 high quality bases) assembled on 2006-10-13
> BS13407.3prime
ATGGTCTAGAAAGCTTCTAAGTGTCCGTCTCCAGACTGACATCCATAAGC
TCCTTGGTGATCTCAGATTTGCTCTTGAGAGGATCAGGATTGCTCAGCGT
ATTGGTATCCTGGCTAAGAGCAGGAGGTGGCAGCTTAAAGCCACTTGGAC
CACCCAAATTAAGGGATCCTCCTGTAAAGACAGGAGGCACTGTTGTGGTG
GTTGTGGTGCTCGAACTGGTGGCCATTTTGTAGAGCAACTGCAGCTGCTT
CATGGCACTGGTGGGATCTGTTGCCTGTGCATTCTGATAATTGCTTGAAG
AACTTTCTTTCACTGGTTTCTTGGCCTGATCCTTTGATTTGGGCTTCTGC
GGTTTCATGCCATTCGACCAGGCCTGCAGCCAGCTGGCCCCATTCCTCTC
CGTGGACGTCATCAATCTCTCCGCCTCCTCCATCACCTGCTGGCGATAAA
GTTGACGGGCCAGAGCCTTCTGATCGCTCTGGCTCACCTGGCGCTTGTTG
AACGATTGATCATCCTGGTTGGGCTCGCCGATGGGACGCGTCTCCTTCTG
GGGACCCAGTTCCACCATCACCTGAAAGTCCGCATGCTCGCCCAGGCGAA
AGCCAAAGCCCAAACGGGAATCAGTTCCCTTTTTAATCG
BS13407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2837-PA | 768 | CG2837-RA | 146..768 | 639..17 | 3115 | 100 | Minus |
CG2837-PB | 768 | CG2837-RB | 146..768 | 639..17 | 3115 | 100 | Minus |
CG2837-PC | 768 | CG2837-RC | 146..768 | 639..17 | 3115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2837-RD | 1089 | CG2837-RD | 314..936 | 639..17 | 3115 | 100 | Minus |
CG2837-RC | 1231 | CG2837-RC | 251..873 | 639..17 | 3115 | 100 | Minus |
CG2837-RB | 1011 | CG2837-RB | 236..858 | 639..17 | 3115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4904223..4904834 | 17..628 | 3060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:36:45 has no hits.
BS13407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:28 Download gff for
BS13407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-PC | 146..768 | 17..639 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:25 Download gff for
BS13407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RB | 236..861 | 11..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:57 Download gff for
BS13407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RB | 236..861 | 11..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:57 Download gff for
BS13407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4904220..4904843 | 11..639 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:25 Download gff for
BS13407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4904220..4904843 | 11..639 | 98 | | Plus |
BS13407.5prime Sequence
609 bp (582 high quality bases) assembled on 2006-10-13
> BS13407.5prime
GAAGTTATCAGTCGACATGATGTCTTGGCCAAAACAATGGGGCTTCGCTA
GCCTCTGGCTGCCCGTGCTGATCGGCCTGCTCCACACACAAAATGCATCA
GCTTTTATTGTGCCCCGGGAACTGCCCTCCATCTTATCCATAGTTTACTC
CAATATACCACCGATTAAAAAGGGAACTGATTCCCGTTTGGGCTTTGGCT
TTCGCCTGGGCGAGCATGCGGACTTTCAGGTGATGGTGGAACTGGGTCCC
CAGAAGGAGACGCGTCCCATCGGCGAGCCCAACCAGGATGATCAATCGTT
CAACAAGCGCCAGGTGAGCCAGAGCGATCAGAAGGCTCTGGCCCGTCAAC
TTTATCGCCAGCAGGTGATGGAGGAGGCGGAGAGATTGATGACGTCCACG
GAGAGGAATGGGGCCAGCTGGCTGCAGGCCTGGTCGAATGGCATGAAACC
GCAGAAGCCCAAATCAAAGGATCAGGCCAAGAAACCAGTGAAAGAAAGTT
CTTCAAGCAATTATCAGAATGCACAGGCAACAGATCCCACCAGTGCCATG
AAGCAGCTGCAGTTGCTCTACAAAATGGCCACCAGTTCGAGCACCACAAC
CACCACAAC
BS13407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2837-PA | 768 | CG2837-RA | 1..593 | 17..609 | 2965 | 100 | Plus |
CG2837-PB | 768 | CG2837-RB | 1..593 | 17..609 | 2965 | 100 | Plus |
CG2837-PC | 768 | CG2837-RC | 1..593 | 17..609 | 2965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2837-RD | 1089 | CG2837-RD | 168..761 | 16..609 | 2970 | 100 | Plus |
CG2837-RC | 1231 | CG2837-RC | 105..698 | 16..609 | 2970 | 100 | Plus |
CG2837-RB | 1011 | CG2837-RB | 90..683 | 16..609 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4904398..4904834 | 609..173 | 2185 | 100 | Minus |
2L | 23513712 | 2L | 4904892..4904979 | 174..87 | 440 | 100 | Minus |
2L | 23513712 | 2L | 4905753..4905823 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:42:13 has no hits.
BS13407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:29 Download gff for
BS13407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-PC | 1..593 | 17..609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:10 Download gff for
BS13407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RB | 90..683 | 16..609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:45 Download gff for
BS13407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RB | 90..683 | 16..609 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:45 Download gff for
BS13407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4904893..4904979 | 87..173 | 100 | <- | Minus |
2L | 4905753..4905823 | 16..86 | 100 | | Minus |
2L | 4904398..4904833 | 174..609 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:10 Download gff for
BS13407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4904398..4904833 | 174..609 | 100 | <- | Minus |
arm_2L | 4904893..4904979 | 87..173 | 100 | <- | Minus |
arm_2L | 4905753..4905823 | 16..86 | 100 | | Minus |
BS13407.complete Sequence
800 bp assembled on 2006-11-01
GenBank Submission: FJ638853
> BS13407.complete
GAAGTTATCAGTCGACATGATGTCTTGGCCAAAACAATGGGGCTTCGCTA
GCCTCTGGCTGCCCGTGCTGATCGGCCTGCTCCACACACAAAATGCATCA
GCTTTTATTGTGCCCCGGGAACTGCCCTCCATCTTATCCATAGTTTACTC
CAATATACCACCGATTAAAAAGGGAACTGATTCCCGTTTGGGCTTTGGCT
TTCGCCTGGGCGAGCATGCGGACTTTCAGGTGATGGTGGAACTGGGTCCC
CAGAAGGAGACGCGTCCCATCGGCGAGCCCAACCAGGATGATCAATCGTT
CAACAAGCGCCAGGTGAGCCAGAGCGATCAGAAGGCTCTGGCCCGTCAAC
TTTATCGCCAGCAGGTGATGGAGGAGGCGGAGAGATTGATGACGTCCACG
GAGAGGAATGGGGCCAGCTGGCTGCAGGCCTGGTCGAATGGCATGAAACC
GCAGAAGCCCAAATCAAAGGATCAGGCCAAGAAACCAGTGAAAGAAAGTT
CTTCAAGCAATTATCAGAATGCACAGGCAACAGATCCCACCAGTGCCATG
AAGCAGCTGCAGTTGCTCTACAAAATGGCCACCAGTTCGAGCACCACAAC
CACCACAACAGTGCCTCCTGTCTTTACAGGAGGATCCCTTAATTTGGGTG
GTCCAAGTGGCTTTAAGCTGCCACCTCCTGCTCTTAGCCAGGATACCAAT
ACGCTGAGCAATCCTGATCCTCTCAAGAGCAAATCTGAGATCACCAAGGA
GCTTATGGATGTCAGTCTGGAGACGGACACTTAGAAGCTTTCTAGACCAT
BS13407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2837-RD | 768 | CG2837-PD | 1..768 | 17..784 | 3840 | 100 | Plus |
CG2837-RC | 768 | CG2837-PC | 1..768 | 17..784 | 3840 | 100 | Plus |
CG2837-RB | 768 | CG2837-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2837-RD | 1089 | CG2837-RD | 168..936 | 16..784 | 3845 | 100 | Plus |
CG2837-RC | 1231 | CG2837-RC | 105..873 | 16..784 | 3845 | 100 | Plus |
CG2837-RB | 1011 | CG2837-RB | 90..858 | 16..784 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4904223..4904834 | 784..173 | 3060 | 100 | Minus |
2L | 23513712 | 2L | 4904892..4904979 | 174..87 | 440 | 100 | Minus |
2L | 23513712 | 2L | 4905753..4905823 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:55:38 has no hits.
BS13407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:24 Download gff for
BS13407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RC | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:05 Download gff for
BS13407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RC | 102..873 | 16..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:53 Download gff for
BS13407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RB | 91..858 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:24 Download gff for
BS13407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RC | 102..873 | 16..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:54 Download gff for
BS13407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2837-RB | 91..858 | 17..784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:54 Download gff for
BS13407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4905753..4905822 | 17..86 | 100 | | Minus |
2L | 4904223..4904833 | 174..784 | 100 | <- | Minus |
2L | 4904893..4904979 | 87..173 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:53 Download gff for
BS13407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4904223..4904833 | 174..784 | 100 | <- | Minus |
arm_2L | 4904893..4904979 | 87..173 | 100 | <- | Minus |
arm_2L | 4905753..4905822 | 17..86 | 100 | | Minus |
BS13407.pep Sequence
Translation from 16 to 783
> BS13407.pep
MMSWPKQWGFASLWLPVLIGLLHTQNASAFIVPRELPSILSIVYSNIPPI
KKGTDSRLGFGFRLGEHADFQVMVELGPQKETRPIGEPNQDDQSFNKRQV
SQSDQKALARQLYRQQVMEEAERLMTSTERNGASWLQAWSNGMKPQKPKS
KDQAKKPVKESSSSNYQNAQATDPTSAMKQLQLLYKMATSSSTTTTTTVP
PVFTGGSLNLGGPSGFKLPPPALSQDTNTLSNPDPLKSKSEITKELMDVS
LETDT*
BS13407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2837-PD | 255 | CG2837-PD | 1..255 | 1..255 | 1318 | 100 | Plus |
CG2837-PC | 255 | CG2837-PC | 1..255 | 1..255 | 1318 | 100 | Plus |
CG2837-PB | 255 | CG2837-PB | 1..255 | 1..255 | 1318 | 100 | Plus |
CG2837-PA | 255 | CG2837-PA | 1..255 | 1..255 | 1318 | 100 | Plus |