Clone Sequence Records
BS13408.3prime Sequence
597 bp (597 high quality bases) assembled on 2006-10-13
> BS13408.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGTAGCCGCAGCTGGAGCGACGACCA
CGAGCACGCTCGAACTTGCGTCCCTTAGAGCGGACATAGGGGCGGGTGTG
CGAGTGGGGCACACCGGGAGCCTTGCCGAAGTGCTTGCAGGCGGTGCGGG
CGGTACGCCTGCCCTGCAGCAGCAGCGTGTTCTTGCCGGTGGGCGATCGG
AGAGCCAGTTGATCGAAGGTCAGGACCTCACCGCCGGCCTTCAGGATGCG
CTCCCTGGCGGTCTGCGTGACGTGCAGGGCGCACACGGTGAGCTTGGGCA
CCACCAGGAGGCGGGCATCGTCGGTGACGGTGCCGACGACCACGATGGTA
GACTCCGGCTGGTTGGCGGCCTTGAAGAAGCGAGCGATGCGCTGAAGCGA
TAGCGGCGGCCTGTTGATCTTGCTCATGAACAAACGCTTCAGGATGATGC
GGTTGAACTTCTTGTTGGTGCGGCGCTGAAGGAAGCGGTACAGCTTGACC
AGCAGGCGCAGGTACACATCCTGGGATTTGGGCTCGGTTCTGCGAACCTT
GCGATCGTACTTGTGGTTGATATCAATACCCATGTCGACTGATAACT
BS13408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8615-PA | 567 | RpL18-RA | 1..567 | 583..17 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 756 | CG8615-RB | 92..658 | 583..17 | 2835 | 100 | Minus |
RpL18-RC | 694 | CG8615-RC | 30..596 | 583..17 | 2835 | 100 | Minus |
RpL18-RA | 724 | CG8615-RA | 60..626 | 583..17 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7240301..7240779 | 17..495 | 2395 | 100 | Plus |
3L | 28110227 | 3L | 7240855..7240942 | 494..581 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:00:31 has no hits.
BS13408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:29 Download gff for
BS13408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8615-PA | 1..567 | 17..583 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:47 Download gff for
BS13408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..628 | 13..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:15 Download gff for
BS13408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..628 | 13..591 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:15 Download gff for
BS13408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7240299..7240777 | 13..493 | 99 | <- | Plus |
3L | 7240855..7240951 | 494..592 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:47 Download gff for
BS13408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7233399..7233877 | 13..493 | 99 | <- | Plus |
arm_3L | 7233955..7234051 | 494..592 | 94 | | Plus |
BS13408.5prime Sequence
597 bp (570 high quality bases) assembled on 2006-10-13
> BS13408.5prime
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTAAAAGAAGTAAAAGCTTTCTAAACC
BS13408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8615-PA | 567 | RpL18-RA | 1..567 | 17..583 | 2810 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 756 | CG8615-RB | 92..658 | 17..583 | 2820 | 99.8 | Plus |
RpL18-RC | 694 | CG8615-RC | 30..596 | 17..583 | 2820 | 99.8 | Plus |
RpL18-RA | 724 | CG8615-RA | 60..626 | 17..583 | 2820 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7240301..7240779 | 583..105 | 2380 | 99.8 | Minus |
3L | 28110227 | 3L | 7240855..7240942 | 106..19 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:43:31 has no hits.
BS13408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:29 Download gff for
BS13408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8615-PA | 1..567 | 17..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:17 Download gff for
BS13408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..628 | 9..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:54 Download gff for
BS13408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..628 | 9..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:54 Download gff for
BS13408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7240299..7240777 | 107..587 | 99 | <- | Minus |
3L | 7240855..7240951 | 8..106 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:17 Download gff for
BS13408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7233399..7233877 | 107..587 | 99 | <- | Minus |
arm_3L | 7233955..7234051 | 8..106 | 94 | | Minus |
BS13408.complete Sequence
599 bp assembled on 2006-11-01
GenBank Submission: FJ637440
> BS13408.complete
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTACAAGAAGTAAAAGCTTTCTAGACCAT
BS13408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 567 | CG8615-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
RpL18-RC | 567 | CG8615-PC | 1..567 | 17..583 | 2835 | 100 | Plus |
RpL18-RA | 567 | CG8615-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 756 | CG8615-RB | 92..658 | 17..583 | 2835 | 100 | Plus |
RpL18-RC | 694 | CG8615-RC | 30..596 | 17..583 | 2835 | 100 | Plus |
RpL18-RA | 724 | CG8615-RA | 60..626 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7240301..7240779 | 583..105 | 2395 | 100 | Minus |
3L | 28110227 | 3L | 7240855..7240942 | 106..19 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:34 has no hits.
BS13408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:25 Download gff for
BS13408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 1..567 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:06 Download gff for
BS13408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 50..626 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:47 Download gff for
BS13408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 60..624 | 17..581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:25 Download gff for
BS13408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 50..626 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:43 Download gff for
BS13408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 60..624 | 17..581 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:43 Download gff for
BS13408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7240303..7240777 | 107..581 | 100 | <- | Minus |
3L | 7240855..7240943 | 17..106 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:47 Download gff for
BS13408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7233403..7233877 | 107..581 | 100 | <- | Minus |
arm_3L | 7233955..7234043 | 17..106 | 98 | | Minus |
BS13408.pep Sequence
Translation from 16 to 582
> BS13408.pep
MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKR
LFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTV
CALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACK
HFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYKK*
BS13408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-PB | 188 | CG8615-PB | 1..188 | 1..188 | 963 | 100 | Plus |
RpL18-PC | 188 | CG8615-PC | 1..188 | 1..188 | 963 | 100 | Plus |
RpL18-PA | 188 | CG8615-PA | 1..188 | 1..188 | 963 | 100 | Plus |