Clone BS13408 Report

Search the DGRC for BS13408

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptRpL18-RA
Protein status:BS13408.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13408.3prime Sequence

597 bp (597 high quality bases) assembled on 2006-10-13

> BS13408.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGTAGCCGCAGCTGGAGCGACGACCA
CGAGCACGCTCGAACTTGCGTCCCTTAGAGCGGACATAGGGGCGGGTGTG
CGAGTGGGGCACACCGGGAGCCTTGCCGAAGTGCTTGCAGGCGGTGCGGG
CGGTACGCCTGCCCTGCAGCAGCAGCGTGTTCTTGCCGGTGGGCGATCGG
AGAGCCAGTTGATCGAAGGTCAGGACCTCACCGCCGGCCTTCAGGATGCG
CTCCCTGGCGGTCTGCGTGACGTGCAGGGCGCACACGGTGAGCTTGGGCA
CCACCAGGAGGCGGGCATCGTCGGTGACGGTGCCGACGACCACGATGGTA
GACTCCGGCTGGTTGGCGGCCTTGAAGAAGCGAGCGATGCGCTGAAGCGA
TAGCGGCGGCCTGTTGATCTTGCTCATGAACAAACGCTTCAGGATGATGC
GGTTGAACTTCTTGTTGGTGCGGCGCTGAAGGAAGCGGTACAGCTTGACC
AGCAGGCGCAGGTACACATCCTGGGATTTGGGCTCGGTTCTGCGAACCTT
GCGATCGTACTTGTGGTTGATATCAATACCCATGTCGACTGATAACT

BS13408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8615-PA 567 RpL18-RA 1..567 583..17 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 756 CG8615-RB 92..658 583..17 2835 100 Minus
RpL18-RC 694 CG8615-RC 30..596 583..17 2835 100 Minus
RpL18-RA 724 CG8615-RA 60..626 583..17 2835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7240301..7240779 17..495 2395 100 Plus
3L 28110227 3L 7240855..7240942 494..581 440 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:00:31 has no hits.

BS13408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:29 Download gff for BS13408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8615-PA 1..567 17..583 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:47 Download gff for BS13408.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..628 13..591 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:15 Download gff for BS13408.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..628 13..591 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:15 Download gff for BS13408.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7240299..7240777 13..493 99 <- Plus
3L 7240855..7240951 494..592 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:47 Download gff for BS13408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7233399..7233877 13..493 99 <- Plus
arm_3L 7233955..7234051 494..592 94   Plus

BS13408.5prime Sequence

597 bp (570 high quality bases) assembled on 2006-10-13

> BS13408.5prime
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTAAAAGAAGTAAAAGCTTTCTAAACC

BS13408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8615-PA 567 RpL18-RA 1..567 17..583 2810 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 756 CG8615-RB 92..658 17..583 2820 99.8 Plus
RpL18-RC 694 CG8615-RC 30..596 17..583 2820 99.8 Plus
RpL18-RA 724 CG8615-RA 60..626 17..583 2820 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7240301..7240779 583..105 2380 99.8 Minus
3L 28110227 3L 7240855..7240942 106..19 440 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:43:31 has no hits.

BS13408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:29 Download gff for BS13408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8615-PA 1..567 17..583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:17 Download gff for BS13408.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..628 9..587 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:54 Download gff for BS13408.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..628 9..587 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:54 Download gff for BS13408.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7240299..7240777 107..587 99 <- Minus
3L 7240855..7240951 8..106 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:17 Download gff for BS13408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7233399..7233877 107..587 99 <- Minus
arm_3L 7233955..7234051 8..106 94   Minus

BS13408.complete Sequence

599 bp assembled on 2006-11-01

GenBank Submission: FJ637440

> BS13408.complete
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTACAAGAAGTAAAAGCTTTCTAGACCAT

BS13408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 567 CG8615-PB 1..567 17..583 2835 100 Plus
RpL18-RC 567 CG8615-PC 1..567 17..583 2835 100 Plus
RpL18-RA 567 CG8615-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 756 CG8615-RB 92..658 17..583 2835 100 Plus
RpL18-RC 694 CG8615-RC 30..596 17..583 2835 100 Plus
RpL18-RA 724 CG8615-RA 60..626 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7240301..7240779 583..105 2395 100 Minus
3L 28110227 3L 7240855..7240942 106..19 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:30:34 has no hits.

BS13408.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:25 Download gff for BS13408.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 1..567 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:06 Download gff for BS13408.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 50..626 9..587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:47 Download gff for BS13408.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 60..624 17..581 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:25 Download gff for BS13408.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 50..626 9..587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:43 Download gff for BS13408.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 60..624 17..581 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:43 Download gff for BS13408.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7240303..7240777 107..581 100 <- Minus
3L 7240855..7240943 17..106 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:47 Download gff for BS13408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7233403..7233877 107..581 100 <- Minus
arm_3L 7233955..7234043 17..106 98   Minus

BS13408.pep Sequence

Translation from 16 to 582

> BS13408.pep
MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKR
LFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTV
CALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACK
HFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYKK*

BS13408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-PB 188 CG8615-PB 1..188 1..188 963 100 Plus
RpL18-PC 188 CG8615-PC 1..188 1..188 963 100 Plus
RpL18-PA 188 CG8615-PA 1..188 1..188 963 100 Plus