Clone Sequence Records
BS13409.3prime Sequence
602 bp (483 high quality bases) assembled on 2006-10-13
> BS13409.3prime
ATGGTCTAGAAAGCTTTTAGAATCTTTCGCGCCGCAATTTATTGCGCACC
GTGATGCCCAAGTGGGTTGCGGCTCCCAGGGCGGCGAACTCCACCAGAAG
CAGCAGCCACTTGATGATGAGTCCGATGGCCACGTTGTCCGTGGCATGCG
CCTGCACGGCCTGCAGGCAGCCCCCGGAGAAGAGGCTGTACTCGCGCCGC
TCCTGATCCTTGTAGCAGCTCAAGGGTATACCCCGTCCCATCAGGATGTA
GTCATGGGCGCCCAACTGGCCGCAGCAGGAGTACTTTTGCTCAAGGAGCG
ATATGCGCTCCACATTGGTCCTTTGATCAGCCCAGGTGGCCAGGAAATCC
TTCTTGGATCGCTCCACGTAGTCCGTGGAGTGGGCTGCCGCGATAATATA
AATCTGCAGGCACAGCAGGATCAGCAGGCAGATCACATAGCTCCAAACCA
GTCCCAGGGAAACCCGAGCGGTGGCAAAGCAGCCCAAAAACGAGGTCAGG
ACCACGAAGGTGCCCACGAAGATCTGGACAACGATGGCGATGTGCTCGAA
GGTGCCCGGCGTGGAGCTGTTCAGCTCGTACACGGACAGAGCAATTCACG
TC
BS13409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12839-PA | 657 | Tsp42En-RA | 79..657 | 595..17 | 2870 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42En-RB | 1326 | CG12839-RB | 261..846 | 602..17 | 2885 | 99.5 | Minus |
| Tsp42En-RA | 970 | CG12839-RA | 261..846 | 602..17 | 2885 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7053525..7053721 | 285..89 | 985 | 100 | Minus |
| 2R | 25286936 | 2R | 7053301..7053456 | 439..284 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7053074..7053236 | 602..440 | 770 | 98.2 | Minus |
| 2R | 25286936 | 2R | 7053846..7053919 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:03:13 has no hits.
BS13409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:30 Download gff for
BS13409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12839-PA | 72..657 | 17..602 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:03 Download gff for
BS13409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 261..855 | 8..602 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:49 Download gff for
BS13409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 261..855 | 8..602 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:49 Download gff for
BS13409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7053848..7053928 | 8..88 | 95 | | Minus |
| 2R | 7053074..7053236 | 440..602 | 98 | -> | Minus |
| 2R | 7053301..7053456 | 284..439 | 100 | -> | Minus |
| 2R | 7053527..7053721 | 89..283 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:03 Download gff for
BS13409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2940579..2940741 | 440..602 | 98 | -> | Minus |
| arm_2R | 2940806..2940961 | 284..439 | 100 | -> | Minus |
| arm_2R | 2941032..2941226 | 89..283 | 100 | -> | Minus |
| arm_2R | 2941353..2941433 | 8..88 | 95 | | Minus |
BS13409.5prime Sequence
584 bp (526 high quality bases) assembled on 2006-10-13
> BS13409.5prime
GAAGTTATCAGTCGACATGGACTGCCGCACATCGTTCCTGAAAGCCGTTC
TTATCGTTCTCAATGTGCTGCTATCGCTGATTGGAGTGACGTTGATTGCT
CTGTCCGTGTACGAGCTGAACAGCTCCACGCCGGGCACCTTCGAGCACAT
CGCCATCGTTGTCCAGATCTTCGTGGGCACCTTCGTGGTCCTGACCTCGT
TTCTGGGCTGCTTTGCCACCGCTCGGGTTTCCCTGGGACTGGTTTGGAGC
TATGTGATCTGCCTGCTGATCCTGCTGTGCCTGCAGATTTATATTATCGC
GGCAGCCCACTCCACGGACTACGTGGAGCGATCCAAGAAGGATTTCCTGG
CCACCTGGGCTGATCAAAGGACCAATGTGGAGCGCATATCGCTCCTTGAG
CAAAAGTACTCCTGCTGCGGCCAGTTGGGCGCCCATGACTACATCCTGAT
GGGACGGGGTATACCCTTGAGCTGCTACAAGGATCAGGAGCGGCGCGAGT
ACAGCCTCTTCTCCGGGGGCTGCCTGCAGGCCGTGCAGGCGCATGCCACG
GACAACGTGGCCATCGGACTCATCATCAAGTGGC
BS13409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12839-PA | 657 | Tsp42En-RA | 1..568 | 17..584 | 2840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42En-RB | 1326 | CG12839-RB | 188..757 | 15..584 | 2850 | 100 | Plus |
| Tsp42En-RA | 970 | CG12839-RA | 188..757 | 15..584 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7053525..7053704 | 405..584 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 7053062..7053236 | 76..250 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 7053301..7053456 | 251..406 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 7052934..7052995 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:22:34 has no hits.
BS13409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:31 Download gff for
BS13409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12839-PA | 1..568 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:20:58 Download gff for
BS13409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 181..757 | 7..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:48 Download gff for
BS13409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 181..757 | 7..584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:48 Download gff for
BS13409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7052927..7052995 | 7..76 | 94 | -> | Plus |
| 2R | 7053063..7053236 | 77..250 | 100 | -> | Plus |
| 2R | 7053301..7053456 | 251..406 | 100 | -> | Plus |
| 2R | 7053527..7053704 | 407..584 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:20:58 Download gff for
BS13409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2940432..2940500 | 7..76 | 94 | -> | Plus |
| arm_2R | 2940568..2940741 | 77..250 | 100 | -> | Plus |
| arm_2R | 2940806..2940961 | 251..406 | 100 | -> | Plus |
| arm_2R | 2941032..2941209 | 407..584 | 100 | | Plus |
BS13409.complete Sequence
689 bp assembled on 2006-11-01
GenBank Submission: FJ637441
> BS13409.complete
GAAGTTATCAGTCGACATGGACTGCCGCACATCGTTCCTGAAAGCCGTTC
TTATCGTTCTCAATGTGCTGCTATCGCTGATTGGAGTGACGTTGATTGCT
CTGTCCGTGTACGAGCTGAACAGCTCCACGCCGGGCACCTTCGAGCACAT
CGCCATCGTTGTCCAGATCTTCGTGGGCACCTTCGTGGTCCTGACCTCGT
TTCTGGGCTGCTTTGCCACCGCTCGGGTTTCCCTGGGACTGGTTTGGAGC
TATGTGATCTGCCTGCTGATCCTGCTGTGCCTGCAGATTTATATTATCGC
GGCAGCCCACTCCACGGACTACGTGGAGCGATCCAAGAAGGATTTCCTGG
CCACCTGGGCTGATCAAAGGACCAATGTGGAGCGCATATCGCTCCTTGAG
CAAAAGTACTCCTGCTGCGGCCAGTTGGGCGCCCATGACTACATCCTGAT
GGGACGGGGTATACCCTTGAGCTGCTACAAGGATCAGGAGCGGCGCGAGT
ACAGCCTCTTCTCCGGGGGCTGCCTGCAGGCCGTGCAGGCGCATGCCACG
GACAACGTGGCCATCGGACTCATCATCAAGTGGCTGCTGCTTCTGGTGGA
GTTCGCCGCCCTGGGAGCCGCAACCCACTTGGGCATCACGGTGCGCAATA
AATTGCGGCGCGAAAGATTCTAAAAGCTTTCTAGACCAT
BS13409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42En-RB | 657 | CG12839-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
| Tsp42En-RA | 657 | CG12839-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42En-RB | 1326 | CG12839-RB | 188..846 | 15..673 | 3295 | 100 | Plus |
| Tsp42En-RA | 970 | CG12839-RA | 188..846 | 15..673 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7053525..7053721 | 405..601 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 7053062..7053236 | 76..250 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 7053301..7053456 | 251..406 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 7053846..7053919 | 600..673 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 7052934..7052995 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:24:57 has no hits.
BS13409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:26 Download gff for
BS13409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:08 Download gff for
BS13409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 154..828 | 7..682 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:47 Download gff for
BS13409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 190..844 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:26 Download gff for
BS13409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 154..828 | 7..682 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:09 Download gff for
BS13409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42En-RA | 190..844 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:09 Download gff for
BS13409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7053063..7053236 | 77..250 | 100 | -> | Plus |
| 2R | 7053301..7053456 | 251..406 | 100 | -> | Plus |
| 2R | 7053527..7053721 | 407..601 | 100 | -> | Plus |
| 2R | 7053848..7053917 | 602..671 | 100 | | Plus |
| 2R | 7052936..7052995 | 17..76 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:47 Download gff for
BS13409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2940441..2940500 | 17..76 | 100 | -> | Plus |
| arm_2R | 2940568..2940741 | 77..250 | 100 | -> | Plus |
| arm_2R | 2940806..2940961 | 251..406 | 100 | -> | Plus |
| arm_2R | 2941032..2941226 | 407..601 | 100 | -> | Plus |
| arm_2R | 2941353..2941422 | 602..671 | 100 | | Plus |
BS13409.pep Sequence
Translation from 16 to 672
> BS13409.pep
MDCRTSFLKAVLIVLNVLLSLIGVTLIALSVYELNSSTPGTFEHIAIVVQ
IFVGTFVVLTSFLGCFATARVSLGLVWSYVICLLILLCLQIYIIAAAHST
DYVERSKKDFLATWADQRTNVERISLLEQKYSCCGQLGAHDYILMGRGIP
LSCYKDQERREYSLFSGGCLQAVQAHATDNVAIGLIIKWLLLLVEFAALG
AATHLGITVRNKLRRERF*
BS13409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..218 | 1106 | 100 | Plus |
| Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..218 | 1106 | 100 | Plus |
| lbm-PB | 208 | CG2374-PB | 1..208 | 1..218 | 243 | 31.7 | Plus |
| lbm-PA | 208 | CG2374-PA | 1..208 | 1..218 | 243 | 31.7 | Plus |
| Tsp42Er-PA | 211 | CG12837-PA | 8..211 | 8..218 | 227 | 25.7 | Plus |
