Clone Sequence Records
BS13410.3prime Sequence
351 bp (351 high quality bases) assembled on 2006-10-13
> BS13410.3prime
ATGGTCTAGAAAGCTTTTAGAAATTCGGAAATCTGTAGGTGTAGGTGCTT
CCCACTTTCCAGCTCGGTTCTGAGTTGCCATATGGTCCTCCCAAGTGCTG
TCCATATCCTCCATTCAGTCCAATCTCGTGGCGTCCATTGTCGCTGGTCC
ACACCTTCTGGTGACCCTGGACTGCAAAGCCAAAACCATCGCCGCTCTGG
CCACCGCCGCCTCCCTGAAGATTGAGTGGGTACTGCGGTGGTGGAGTGGG
CTTCATGGTCATGTCGTCGGGCATCGGATAAGCCAAAGTAGAAGCGATTG
CGCAGCAAAGTAAGGCGACGGCAATGGTGAACTGCATGTCGACTGATAAC
T
BS13410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12763-PA | 321 | Dpt-RA | 1..321 | 337..17 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpt-RA | 496 | CG12763-RA | 45..365 | 337..17 | 1605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18865809..18866129 | 337..17 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:05:44 has no hits.
BS13410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:31 Download gff for
BS13410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12763-PA | 1..321 | 17..337 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:35 Download gff for
BS13410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 42..369 | 11..340 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:12 Download gff for
BS13410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 42..369 | 11..340 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:12 Download gff for
BS13410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18865806..18866133 | 11..340 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:35 Download gff for
BS13410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14753311..14753638 | 11..340 | 99 | | Minus |
BS13410.5prime Sequence
351 bp (351 high quality bases) assembled on 2006-10-13
> BS13410.5prime
GAAGTTATCAGTCGACATGCAGTTCACCATTGCCGTCGCCTTACTTTGCT
GCGCAATCGCTTCTACTTTGGCTTATCCGATGCCCGACGACATGACCATG
AAGCCCACTCCACCACCGCAGTACCCACTCAATCTTCAGGGAGGCGGCGG
TGGCCAGAGCGGCGATGGTTTTGGCTTTGCAGTCCAGGGTCACCAGAAGG
TGTGGACCAGCGACAATGGACGCCACGAGATTGGACTGAATGGAGGATAT
GGACAGCACTTGGGAGGACCATATGGCAACTCAGAACCGAGCTGGAAAGT
GGGAAGCACCTACACCTACAGATTTCCGAATTTCTAAAAGCTTTCTAGAC
C
BS13410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12763-PA | 321 | Dpt-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpt-RA | 496 | CG12763-RA | 45..365 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18865809..18866129 | 17..337 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:12:46 has no hits.
BS13410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:31 Download gff for
BS13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12763-PA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:02 Download gff for
BS13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 42..369 | 14..343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:27 Download gff for
BS13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 42..369 | 14..343 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:27 Download gff for
BS13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18865806..18866133 | 14..343 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:02 Download gff for
BS13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14753311..14753638 | 14..343 | 99 | | Plus |
BS13410.complete Sequence
353 bp assembled on 2006-11-01
GenBank Submission: FJ637442
> BS13410.complete
GAAGTTATCAGTCGACATGCAGTTCACCATTGCCGTCGCCTTACTTTGCT
GCGCAATCGCTTCTACTTTGGCTTATCCGATGCCCGACGACATGACCATG
AAGCCCACTCCACCACCGCAGTACCCACTCAATCTTCAGGGAGGCGGCGG
TGGCCAGAGCGGCGATGGTTTTGGCTTTGCAGTCCAGGGTCACCAGAAGG
TGTGGACCAGCGACAATGGACGCCACGAGATTGGACTGAATGGAGGATAT
GGACAGCACTTGGGAGGACCATATGGCAACTCAGAACCGAGCTGGAAAGT
GGGAAGCACCTACACCTACAGATTTCCGAATTTCTAAAAGCTTTCTAGAC
CAT
BS13410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpt-RA | 321 | CG12763-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpt-RA | 496 | CG12763-RA | 45..365 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18865809..18866129 | 17..337 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:10:10 has no hits.
BS13410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:27 Download gff for
BS13410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:10 Download gff for
BS13410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 42..369 | 14..343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:02:28 Download gff for
BS13410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 45..363 | 17..335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:27 Download gff for
BS13410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 42..369 | 14..343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:23 Download gff for
BS13410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpt-RA | 45..363 | 17..335 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:23 Download gff for
BS13410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18865809..18866127 | 17..335 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:02:28 Download gff for
BS13410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14753314..14753632 | 17..335 | 100 | | Plus |
BS13410.pep Sequence
Translation from 16 to 336
> BS13410.pep
MQFTIAVALLCCAIASTLAYPMPDDMTMKPTPPPQYPLNLQGGGGGQSGD
GFGFAVQGHQKVWTSDNGRHEIGLNGGYGQHLGGPYGNSEPSWKVGSTYT
YRFPNF*
BS13410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpt-PA | 106 | CG12763-PA | 1..106 | 1..106 | 597 | 100 | Plus |
| DptB-PA | 120 | CG10794-PA | 1..120 | 1..103 | 240 | 41.7 | Plus |
