Clone Sequence Records
BS13411.3prime Sequence
588 bp (587 high quality bases) assembled on 2006-10-13
> BS13411.3prime
ATGGTCTAGAAAGCTTTCAGGTGGAGTTATCCAGAACAACCACCTGTGTG
TTTTGGTATCTTCGCCAGGCACTCTCCGCCCTTTCCAAGTATTCACCGAT
CTCCTGTCGCTTGTTCAGAAGGTCGTACTTCTCTAGAGCCAACTTCAGGA
GTACGTACTCCAGGCTTCGAATGCCTCCGAGATTGTTTGGATCCCTTAGG
TTATCGACTAGGATTACGAATTTCTTGAGCAGCTCCACCAGCTGCCCAAA
GTTGCTCAAATCGTCCAGATTAGCATCCACCTCGTTGACGTATCGCATAC
TCTGCTTAATCCTTCTGGCCAAATCGGTGCTCCTGCCAACCAGGGGTGAG
AGCTCCGTATTCAGCTGTTGCACCGATCTGCGCGTATCGGTCACCTTCAG
CAATGCGTCCTGATTATACTGATCCTGATCTGTCCACTGGGTCATCGGAG
CCTTAGTAGTCGCTCCTTCGTTGTCCACCATAGATATCCGATCGTTCTCC
ACAATAATGGTCTTGTCGATGGTGTCGGATGCATTCGGCGGCTGCTGTAC
GTGAAAGTCCAAGGTGAAGTGAAACCGCATGCTACCCT
BS13411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-PA | 624 | CG9837-RA | 53..624 | 588..17 | 2860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-RF | 2072 | CG9837-RF | 82..653 | 588..17 | 2860 | 100 | Minus |
| CG9837-RE | 802 | CG9837-RE | 82..653 | 588..17 | 2860 | 100 | Minus |
| CG9837-RD | 1488 | CG9837-RD | 569..1140 | 588..17 | 2860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8809098..8809669 | 17..588 | 2860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:48 has no hits.
BS13411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:32 Download gff for
BS13411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-PA | 53..624 | 17..588 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:48 Download gff for
BS13411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RD | 569..1140 | 17..588 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:36 Download gff for
BS13411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RD | 569..1140 | 17..588 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:36 Download gff for
BS13411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8809098..8809669 | 17..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:48 Download gff for
BS13411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4634820..4635391 | 17..588 | 100 | | Plus |
BS13411.5prime Sequence
654 bp (598 high quality bases) assembled on 2006-10-13
> BS13411.5prime
GAAGTTATCAGTCGACATGTGGTCCTCTAAGACTATTTTGGTTTTCCTAG
CAGCATTTACTTTGGTCCAGGGTAGCATGCGGTTTCACTTCACCTTGGAC
TTTCACGTACAGCAGCCGCCGAATGCATCCGACACCATCGACAAGACCAT
TATTGTGGAGAACGATCGGATATCTATGGTGGACAACGAAGGAGCGACTA
CTAAGGCTCCGATGACCCAGTGGACAGATCAGGATCAGTATAATCAGGAC
GCATTGCTGAAGGTGACCGATACGCGCAGATCGGTGCAACAGCTGAATAC
GGAGCTCTCACCCCTGGTTGGCAGGAGCACCGATTTGGCCAGAAGGATTA
AGCAGAGTATGCGATACGTCAACGAGGTGGATGCTAATCTGGACGATTTG
AGCAACTTTGGGCAGCTGGTGGAGCTGCTCAAGAAATTCGTAATCCTAGT
CGATAACCTAAGGGATCCAAACAATCTCGGAGGCATTCGAAGCCTGGAGT
ACGTACTCCTGAAGTTGGCTCTAGAGAAGTACGACCTTCTGAACAAGCGA
CAGGAGATCGGTGAATACTTGGAAAGGGCGGAGAGTGCCTGGCGAAGATA
CCAAAACACACAGGTGGTTGTTCTGGATAACTCCACCTGAAAGCTTTCTA
GACC
BS13411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-PA | 624 | CG9837-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-RF | 2072 | CG9837-RF | 30..653 | 17..640 | 3120 | 100 | Plus |
| CG9837-RE | 802 | CG9837-RE | 30..653 | 17..640 | 3120 | 100 | Plus |
| CG9837-RD | 1488 | CG9837-RD | 568..1140 | 68..640 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8809098..8809669 | 640..69 | 2860 | 100 | Minus |
| 3R | 32079331 | 3R | 8809728..8809782 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:11:34 has no hits.
BS13411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:33 Download gff for
BS13411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-PA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:32 Download gff for
BS13411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RE | 30..653 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:14 Download gff for
BS13411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RE | 30..653 | 17..640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:14 Download gff for
BS13411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8809098..8809662 | 76..640 | 100 | <- | Minus |
| 3R | 8809725..8809782 | 17..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:32 Download gff for
BS13411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4634820..4635384 | 76..640 | 100 | <- | Minus |
| arm_3R | 4635447..4635504 | 17..75 | 94 | | Minus |
BS13411.complete Sequence
656 bp assembled on 2006-11-01
GenBank Submission: FJ637443
> BS13411.complete
GAAGTTATCAGTCGACATGTGGTCCTCTAAGACTATTTTGGTTTTCCTAG
CAGCATTTACTTTGGTCCAGGGTAGCATGCGGTTTCACTTCACCTTGGAC
TTTCACGTACAGCAGCCGCCGAATGCATCCGACACCATCGACAAGACCAT
TATTGTGGAGAACGATCGGATATCTATGGTGGACAACGAAGGAGCGACTA
CTAAGGCTCCGATGACCCAGTGGACAGATCAGGATCAGTATAATCAGGAC
GCATTGCTGAAGGTGACCGATACGCGCAGATCGGTGCAACAGCTGAATAC
GGAGCTCTCACCCCTGGTTGGCAGGAGCACCGATTTGGCCAGAAGGATTA
AGCAGAGTATGCGATACGTCAACGAGGTGGATGCTAATCTGGACGATTTG
AGCAACTTTGGGCAGCTGGTGGAGCTGCTCAAGAAATTCGTAATCCTAGT
CGATAACCTAAGGGATCCAAACAATCTCGGAGGCATTCGAAGCCTGGAGT
ACGTACTCCTGAAGTTGGCTCTAGAGAAGTACGACCTTCTGAACAAGCGA
CAGGAGATCGGTGAATACTTGGAAAGGGCGGAGAGTGCCTGGCGAAGATA
CCAAAACACACAGGTGGTTGTTCTGGATAACTCCACCTGAAAGCTTTCTA
GACCAT
BS13411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-RF | 624 | CG9837-PF | 1..624 | 17..640 | 3120 | 100 | Plus |
| CG9837-RE | 624 | CG9837-PE | 1..624 | 17..640 | 3120 | 100 | Plus |
| CG9837-RD | 564 | CG9837-PD | 1..564 | 77..640 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-RF | 2072 | CG9837-RF | 30..653 | 17..640 | 3120 | 100 | Plus |
| CG9837-RE | 802 | CG9837-RE | 30..653 | 17..640 | 3120 | 100 | Plus |
| CG9837-RD | 1488 | CG9837-RD | 568..1140 | 68..640 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8809098..8809669 | 640..69 | 2860 | 100 | Minus |
| 3R | 32079331 | 3R | 8809728..8809782 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:44:16 has no hits.
BS13411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:28 Download gff for
BS13411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:11 Download gff for
BS13411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RA | 30..653 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:08 Download gff for
BS13411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RE | 30..652 | 17..639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:29 Download gff for
BS13411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RA | 30..653 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:34 Download gff for
BS13411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RE | 30..652 | 17..639 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:34 Download gff for
BS13411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8809099..8809662 | 76..639 | 100 | <- | Minus |
| 3R | 8809725..8809782 | 17..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:08 Download gff for
BS13411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4634821..4635384 | 76..639 | 100 | <- | Minus |
| arm_3R | 4635447..4635504 | 17..75 | 94 | | Minus |
BS13411.pep Sequence
Translation from 16 to 639
> BS13411.pep
MWSSKTILVFLAAFTLVQGSMRFHFTLDFHVQQPPNASDTIDKTIIVEND
RISMVDNEGATTKAPMTQWTDQDQYNQDALLKVTDTRRSVQQLNTELSPL
VGRSTDLARRIKQSMRYVNEVDANLDDLSNFGQLVELLKKFVILVDNLRD
PNNLGGIRSLEYVLLKLALEKYDLLNKRQEIGEYLERAESAWRRYQNTQV
VVLDNST*
BS13411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-PF | 207 | CG9837-PF | 1..207 | 1..207 | 1049 | 100 | Plus |
| CG9837-PE | 207 | CG9837-PE | 1..207 | 1..207 | 1049 | 100 | Plus |
| CG9837-PD | 187 | CG9837-PD | 1..187 | 21..207 | 951 | 100 | Plus |
