Clone Sequence Records
BS13412.3prime Sequence
804 bp (760 high quality bases) assembled on 2006-10-13
> BS13412.3prime
ATGGTCTAGAAAGCTTTTATTTGTCAAAAAATACATCATCTGTGAGCTCT
TGCTCGAAAATGCGCCTCGCTTCCTGGGTGACGTCCAGCAAGGTGGCCTT
GCTATTGCACAGGATCACATAGTACTGCCTGTAGTTACAGCGCCGCTTCA
CAATCCAATAGTCATTGGTGGTCTTGACCTGAACTTCCTCGGCAGGAGCA
CTCTCCATTTCCGCCTTGCCACTGCCATTGGCCAAGTCCGCAATGATACT
AAGCACATTGCGGGGCAGCCCTTGGGGCAGGTGCCTCTGAAAGTTCGTGT
GGTGCTGCAGGCTTTGTTCGTTAATGAACAAGTACTTCGGCGCCGTTTCG
CTGTTCCCGCTGGAGTTGTCCTGGCCTGCAGCACCCACCGCCTCCTTTGT
CAACTCGCTGGATATGTCCCGGGCCAACGAAGTCAGTTGGGGAGCCATGT
AGGCATGGAGATCGTCGTAGAGATCTTGTTTCGGCGCAACCTGGTCAGCA
TTCAGAAACAGACACAGAGTTATGTGCAAAGCGCGGTAGATGAGCAAGTA
GTAGGGTTTGGCCTCCTTGTCCAGTGTCACATAGACCTTCATTGGATGAT
CTTCCTCATTCACAGCGTCATGTTCATCTCCTGCGACCTTCTGACGACTT
CTTACGAATCCGCCCACCTGGCATTCACTTATGCTTCGCTTTAGTGAAGG
AGAAACTGCAATGGTGGAACTGCTGGCCTCGACTTTCAGCACGTGTTGCA
CGACATACGAGTGCACCGCAGTGCAGATCCCTCGGGCTAAGTTTTCCGCC
CCAA
BS13412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14980-PB | 1458 | CG14980-RB | 709..1458 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1531 | CG14980-RB | 730..1517 | 804..16 | 3875 | 99.5 | Minus |
CG14977-RB | 543 | CG14977-RB | 503..543 | 16..56 | 205 | 100 | Plus |
CG14977-RA | 543 | CG14977-RA | 503..543 | 16..56 | 205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3897458..3897941 | 16..499 | 2420 | 100 | Plus |
3L | 28110227 | 3L | 3898004..3898308 | 499..804 | 1435 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:28:04 has no hits.
BS13412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:33 Download gff for
BS13412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-PB | 674..1458 | 17..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:43 Download gff for
BS13412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 732..1517 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:08 Download gff for
BS13412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 732..1517 | 16..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:08 Download gff for
BS13412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3897458..3897940 | 16..498 | 100 | <- | Plus |
3L | 3898004..3898306 | 499..802 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:43 Download gff for
BS13412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3897458..3897940 | 16..498 | 100 | <- | Plus |
arm_3L | 3898004..3898306 | 499..802 | 98 | | Plus |
BS13412.5prime Sequence
702 bp (660 high quality bases) assembled on 2006-10-13
> BS13412.5prime
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CT
BS13412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14980-PB | 1458 | CG14980-RB | 1..686 | 17..702 | 3430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1531 | CG14980-RB | 59..744 | 17..702 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3898294..3898798 | 702..198 | 2525 | 100 | Minus |
3L | 28110227 | 3L | 3898862..3898961 | 198..99 | 500 | 100 | Minus |
3L | 28110227 | 3L | 3899014..3899098 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:39:26 has no hits.
BS13412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:34 Download gff for
BS13412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-PB | 1..686 | 17..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:49 Download gff for
BS13412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 56..744 | 14..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:17 Download gff for
BS13412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 56..744 | 14..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:17 Download gff for
BS13412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3898294..3898797 | 199..702 | 100 | <- | Minus |
3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
3L | 3899015..3899101 | 14..100 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:49 Download gff for
BS13412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3898294..3898797 | 199..702 | 100 | <- | Minus |
arm_3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
arm_3L | 3899015..3899101 | 14..100 | 98 | | Minus |
BS13412.complete Sequence
1490 bp assembled on 2006-11-01
GenBank Submission: FJ637444
> BS13412.complete
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CTTAGCCCGGAAGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGT
GCTGAAAGTCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAA
AGCGAAGCATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCGTCAG
AAGGTCGCAGGAGATGAACATGACGCTGTGAATGAGGAAGATCATCCAAT
GAAGGTCTATGTGACACTGGACAAGGAGGCCAAACCCTACTACTTGCTCA
TCTACCGCGCTTTGCACATAACTCTGTGTCTGTTTCTGAATGCTGACCAG
GTTGCGCCGAAACAAGATCTCTACGACGATCTCCATGCCTACATGGCTCC
CCAACTGACTTCGTTGGCCCGGGACATATCCAGCGAGTTGACAAAGGAGG
CGGTGGGTGCTGCAGGCCAGGACAACTCCAGCGGGAACAGCGAAACGGCG
CCGAAGTACTTGTTCATTAACGAACAAAGCCTGCAGCACCACACGAACTT
TCAGAGGCACCTGCCCCAAGGGCTGCCCCGCAATGTGCTTAGTATCATTG
CGGACTTGGCCAATGGCAGTGGCAAGGCGGAAATGGAGAGTGCTCCTGCC
GAGGAAGTTCAGGTCAAGACCACCAATGACTATTGGATTGTGAAGCGGCG
CTGTAACTACAGGCAGTACTATGTGATCCTGTGCAATAGCAAGGCCACCT
TGCTGGACGTCACCCAGGAAGCGAGGCGCATTTTCGAGCAAGAGCTCACA
GATGATGTATTTTTTGACAAATAAAAGCTTTCTAGACCAT
BS13412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1458 | CG14980-PB | 1..1458 | 17..1474 | 7275 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1531 | CG14980-RB | 59..1517 | 17..1475 | 7280 | 99.9 | Plus |
CG14977-RB | 543 | CG14977-RB | 503..543 | 1475..1435 | 205 | 100 | Minus |
CG14977-RA | 543 | CG14977-RA | 503..543 | 1475..1435 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3898004..3898798 | 992..198 | 3960 | 99.9 | Minus |
3L | 28110227 | 3L | 3897458..3897941 | 1475..992 | 2420 | 100 | Minus |
3L | 28110227 | 3L | 3898862..3898961 | 198..99 | 500 | 100 | Minus |
3L | 28110227 | 3L | 3899014..3899098 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:13:19 has no hits.
BS13412.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:31 Download gff for
BS13412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-RB | 1..1458 | 17..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:15 Download gff for
BS13412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-RB | 56..1517 | 14..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:49 Download gff for
BS13412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 59..1508 | 17..1466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:31 Download gff for
BS13412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-RB | 56..1517 | 14..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:57 Download gff for
BS13412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 59..1508 | 17..1466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:57 Download gff for
BS13412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3897467..3897940 | 993..1466 | 100 | <- | Minus |
3L | 3898004..3898797 | 199..992 | 99 | <- | Minus |
3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
3L | 3899015..3899098 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:49 Download gff for
BS13412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3897467..3897940 | 993..1466 | 100 | <- | Minus |
arm_3L | 3898004..3898797 | 199..992 | 99 | <- | Minus |
arm_3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
arm_3L | 3899015..3899098 | 17..100 | 100 | | Minus |
BS13412.pep Sequence
Translation from 16 to 1473
> BS13412.pep
MAKLLQRVEITLRSFYIFNSTFGQVEGEEHKKVLFYHPNDIELNTKIKDV
GLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLVLNVPKEV
RLKEGVEVADYRGAEISDRIYRAILRQCYQMFRFQNGCFSSCGSEEPNPD
KRRELLCQKLLQFYDQHLTNLRDPAQCDIIDMLHSIQYLPLDKTLFLRAQ
NFGTLCETFPDIKESIMLYQEQVLCGGKLSPEDLHCVHSYVVQHVLKVEA
SSSTIAVSPSLKRSISECQVGGFVRSRQKVAGDEHDAVNEEDHPMKVYVT
LDKEAKPYYLLIYRALHITLCLFLNADQVAPKQDLYDDLHAYMAPQLTSL
ARDISSELTKEAVGAAGQDNSSGNSETAPKYLFINEQSLQHHTNFQRHLP
QGLPRNVLSIIADLANGSGKAEMESAPAEEVQVKTTNDYWIVKRRCNYRQ
YYVILCNSKATLLDVTQEARRIFEQELTDDVFFDK*
BS13412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-PB | 485 | CG14980-PB | 1..485 | 1..485 | 2536 | 100 | Plus |