Clone BS13412 Report

Search the DGRC for BS13412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCcz1-RB
Protein status:BS13412.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13412.3prime Sequence

804 bp (760 high quality bases) assembled on 2006-10-13

> BS13412.3prime
ATGGTCTAGAAAGCTTTTATTTGTCAAAAAATACATCATCTGTGAGCTCT
TGCTCGAAAATGCGCCTCGCTTCCTGGGTGACGTCCAGCAAGGTGGCCTT
GCTATTGCACAGGATCACATAGTACTGCCTGTAGTTACAGCGCCGCTTCA
CAATCCAATAGTCATTGGTGGTCTTGACCTGAACTTCCTCGGCAGGAGCA
CTCTCCATTTCCGCCTTGCCACTGCCATTGGCCAAGTCCGCAATGATACT
AAGCACATTGCGGGGCAGCCCTTGGGGCAGGTGCCTCTGAAAGTTCGTGT
GGTGCTGCAGGCTTTGTTCGTTAATGAACAAGTACTTCGGCGCCGTTTCG
CTGTTCCCGCTGGAGTTGTCCTGGCCTGCAGCACCCACCGCCTCCTTTGT
CAACTCGCTGGATATGTCCCGGGCCAACGAAGTCAGTTGGGGAGCCATGT
AGGCATGGAGATCGTCGTAGAGATCTTGTTTCGGCGCAACCTGGTCAGCA
TTCAGAAACAGACACAGAGTTATGTGCAAAGCGCGGTAGATGAGCAAGTA
GTAGGGTTTGGCCTCCTTGTCCAGTGTCACATAGACCTTCATTGGATGAT
CTTCCTCATTCACAGCGTCATGTTCATCTCCTGCGACCTTCTGACGACTT
CTTACGAATCCGCCCACCTGGCATTCACTTATGCTTCGCTTTAGTGAAGG
AGAAACTGCAATGGTGGAACTGCTGGCCTCGACTTTCAGCACGTGTTGCA
CGACATACGAGTGCACCGCAGTGCAGATCCCTCGGGCTAAGTTTTCCGCC
CCAA

BS13412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14980-PB 1458 CG14980-RB 709..1458 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1531 CG14980-RB 730..1517 804..16 3875 99.5 Minus
CG14977-RB 543 CG14977-RB 503..543 16..56 205 100 Plus
CG14977-RA 543 CG14977-RA 503..543 16..56 205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3897458..3897941 16..499 2420 100 Plus
3L 28110227 3L 3898004..3898308 499..804 1435 98.7 Plus
Blast to na_te.dros performed on 2015-02-10 16:28:04 has no hits.

BS13412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:33 Download gff for BS13412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14980-PB 674..1458 17..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:43 Download gff for BS13412.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 732..1517 16..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:08 Download gff for BS13412.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 732..1517 16..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:08 Download gff for BS13412.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3897458..3897940 16..498 100 <- Plus
3L 3898004..3898306 499..802 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:43 Download gff for BS13412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3897458..3897940 16..498 100 <- Plus
arm_3L 3898004..3898306 499..802 98   Plus

BS13412.5prime Sequence

702 bp (660 high quality bases) assembled on 2006-10-13

> BS13412.5prime
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CT

BS13412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14980-PB 1458 CG14980-RB 1..686 17..702 3430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1531 CG14980-RB 59..744 17..702 3430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3898294..3898798 702..198 2525 100 Minus
3L 28110227 3L 3898862..3898961 198..99 500 100 Minus
3L 28110227 3L 3899014..3899098 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:39:26 has no hits.

BS13412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:34 Download gff for BS13412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14980-PB 1..686 17..702 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:49 Download gff for BS13412.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 56..744 14..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:17 Download gff for BS13412.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 56..744 14..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:17 Download gff for BS13412.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3898294..3898797 199..702 100 <- Minus
3L 3898862..3898959 101..198 100 <- Minus
3L 3899015..3899101 14..100 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:49 Download gff for BS13412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3898294..3898797 199..702 100 <- Minus
arm_3L 3898862..3898959 101..198 100 <- Minus
arm_3L 3899015..3899101 14..100 98   Minus

BS13412.complete Sequence

1490 bp assembled on 2006-11-01

GenBank Submission: FJ637444

> BS13412.complete
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CTTAGCCCGGAAGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGT
GCTGAAAGTCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAA
AGCGAAGCATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCGTCAG
AAGGTCGCAGGAGATGAACATGACGCTGTGAATGAGGAAGATCATCCAAT
GAAGGTCTATGTGACACTGGACAAGGAGGCCAAACCCTACTACTTGCTCA
TCTACCGCGCTTTGCACATAACTCTGTGTCTGTTTCTGAATGCTGACCAG
GTTGCGCCGAAACAAGATCTCTACGACGATCTCCATGCCTACATGGCTCC
CCAACTGACTTCGTTGGCCCGGGACATATCCAGCGAGTTGACAAAGGAGG
CGGTGGGTGCTGCAGGCCAGGACAACTCCAGCGGGAACAGCGAAACGGCG
CCGAAGTACTTGTTCATTAACGAACAAAGCCTGCAGCACCACACGAACTT
TCAGAGGCACCTGCCCCAAGGGCTGCCCCGCAATGTGCTTAGTATCATTG
CGGACTTGGCCAATGGCAGTGGCAAGGCGGAAATGGAGAGTGCTCCTGCC
GAGGAAGTTCAGGTCAAGACCACCAATGACTATTGGATTGTGAAGCGGCG
CTGTAACTACAGGCAGTACTATGTGATCCTGTGCAATAGCAAGGCCACCT
TGCTGGACGTCACCCAGGAAGCGAGGCGCATTTTCGAGCAAGAGCTCACA
GATGATGTATTTTTTGACAAATAAAAGCTTTCTAGACCAT

BS13412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1458 CG14980-PB 1..1458 17..1474 7275 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1531 CG14980-RB 59..1517 17..1475 7280 99.9 Plus
CG14977-RB 543 CG14977-RB 503..543 1475..1435 205 100 Minus
CG14977-RA 543 CG14977-RA 503..543 1475..1435 205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3898004..3898798 992..198 3960 99.9 Minus
3L 28110227 3L 3897458..3897941 1475..992 2420 100 Minus
3L 28110227 3L 3898862..3898961 198..99 500 100 Minus
3L 28110227 3L 3899014..3899098 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:13:19 has no hits.

BS13412.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:31 Download gff for BS13412.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1458 17..1474 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:15 Download gff for BS13412.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 56..1517 14..1475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:49 Download gff for BS13412.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 59..1508 17..1466 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:31 Download gff for BS13412.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 56..1517 14..1475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:57 Download gff for BS13412.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 59..1508 17..1466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:57 Download gff for BS13412.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3897467..3897940 993..1466 100 <- Minus
3L 3898004..3898797 199..992 99 <- Minus
3L 3898862..3898959 101..198 100 <- Minus
3L 3899015..3899098 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:49 Download gff for BS13412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3897467..3897940 993..1466 100 <- Minus
arm_3L 3898004..3898797 199..992 99 <- Minus
arm_3L 3898862..3898959 101..198 100 <- Minus
arm_3L 3899015..3899098 17..100 100   Minus

BS13412.pep Sequence

Translation from 16 to 1473

> BS13412.pep
MAKLLQRVEITLRSFYIFNSTFGQVEGEEHKKVLFYHPNDIELNTKIKDV
GLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLVLNVPKEV
RLKEGVEVADYRGAEISDRIYRAILRQCYQMFRFQNGCFSSCGSEEPNPD
KRRELLCQKLLQFYDQHLTNLRDPAQCDIIDMLHSIQYLPLDKTLFLRAQ
NFGTLCETFPDIKESIMLYQEQVLCGGKLSPEDLHCVHSYVVQHVLKVEA
SSSTIAVSPSLKRSISECQVGGFVRSRQKVAGDEHDAVNEEDHPMKVYVT
LDKEAKPYYLLIYRALHITLCLFLNADQVAPKQDLYDDLHAYMAPQLTSL
ARDISSELTKEAVGAAGQDNSSGNSETAPKYLFINEQSLQHHTNFQRHLP
QGLPRNVLSIIADLANGSGKAEMESAPAEEVQVKTTNDYWIVKRRCNYRQ
YYVILCNSKATLLDVTQEARRIFEQELTDDVFFDK*

BS13412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-PB 485 CG14980-PB 1..485 1..485 2536 100 Plus