Clone BS13415 Report

Search the DGRC for BS13415

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptFMRFa-RA
Protein status:BS13415.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13415.3prime Sequence

689 bp (565 high quality bases) assembled on 2006-10-13

> BS13415.3prime
ATGGTCTAGAAAGCTTTCACTGGCCGAAGAACTGGTCCTGTTCCACACTC
CCATCCTGCGTGGTGGTCGCCTGTGCGCCGTTCTTCACCTGCTGATCCTG
CAGCTCCTGTTTCTTGAACAGCTCCGTCATGGCCTTGTCCACTGGACTGC
GTTCGCCTGGGTTGCCTTGATTGGACTTGACTGGCTTGGACTCGGGAGCC
GCCGGCTTCAAGCTCTTACCGAATCGAATGAAGTTTGAGTCCATCTTCCC
GGAGCGCACAAAATCCTGCGGAGCGGAACGCCCGAAGCGCATGAAGTTGT
CCGGGCGACCGAATCGCATGAAATCCTGTTTGGGACTGCGAAGCTCCTCG
TGGGGACTGCGTCCGAAGCGCATGAAATTGTCGGAGCGTCCGAACCTCAT
GAAGTCCTCCGCCGGAGTGCGTCCGAACCTCATGAAATCCTCAGCCGGAG
TGCGTCCAAACCTCATGAAATCCTGCTTGGGATCTCGACCGAATCTCATG
AAATCCTGCTTGGGATCCCGACCGAATCTCATGAAGTCCTGCTTTGGATC
CCTGCCAAACCTCATGAAATCCTGTTTCGGATCCCGACCAAACCGCATGA
AGTCCTGCTTGGGATCTCTGCCATACCGATCCAATAGCTGCTCGCTTGGC
CATGCCCTCCAGTTCATCGGAATCAGCATAGCTGCCCTC

BS13415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2346-PA 1044 Fmrf-RA 428..1044 633..17 3060 99.8 Minus
CG2346-PA 1044 Fmrf-RA 373..428 689..634 255 98.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1427 CG2346-RA 481..1152 689..17 3310 99.6 Minus
FMRFa-RA 1427 CG2346-RA 553..750 583..386 555 85.4 Minus
FMRFa-RA 1427 CG2346-RA 586..783 616..419 555 85.4 Minus
FMRFa-RA 1427 CG2346-RA 608..815 627..414 335 78 Minus
FMRFa-RA 1427 CG2346-RA 542..755 561..354 320 77.6 Minus
FMRFa-RA 1427 CG2346-RA 652..713 616..555 205 88.7 Minus
FMRFa-RA 1427 CG2346-RA 553..614 517..456 190 87.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9909511..9910182 689..17 3285 99.6 Minus
2R 25286936 2R 9909583..9909780 583..386 555 85.4 Minus
2R 25286936 2R 9909616..9909813 616..419 555 85.4 Minus
2R 25286936 2R 9909638..9909813 627..452 325 79 Minus
2R 25286936 2R 9909572..9909747 561..386 310 78.4 Minus
2R 25286936 2R 9909682..9909743 616..555 205 88.7 Minus
2R 25286936 2R 9909583..9909644 517..456 190 87.1 Minus
Blast to na_te.dros performed 2015-02-12 17:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 608..700 116..205 107 59.1 Plus

BS13415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:34 Download gff for BS13415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2346-PA 373..1044 17..689 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:13 Download gff for BS13415.3prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 481..1152 17..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:21 Download gff for BS13415.3prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 481..1152 17..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:21 Download gff for BS13415.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9909511..9910182 17..689 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:13 Download gff for BS13415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5797016..5797687 17..689 99   Minus

BS13415.5prime Sequence

696 bp (649 high quality bases) assembled on 2006-10-13

> BS13415.5prime
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAAGACTTCATGAGGTTCGGACGCTCCGA

BS13415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2346-PA 1044 Fmrf-RA 1..680 17..696 3375 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1427 CG2346-RA 109..788 17..696 3385 99.9 Plus
FMRFa-RA 1427 CG2346-RA 586..783 461..658 570 85.9 Plus
FMRFa-RA 1427 CG2346-RA 553..750 494..691 555 85.4 Plus
FMRFa-RA 1427 CG2346-RA 608..815 450..663 320 77.6 Plus
FMRFa-RA 1427 CG2346-RA 542..717 516..691 295 77.8 Plus
FMRFa-RA 1427 CG2346-RA 553..614 560..621 190 87.1 Plus
FMRFa-RA 1427 CG2346-RA 652..713 461..522 190 87.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9909139..9909818 17..696 3385 99.9 Plus
2R 25286936 2R 9909616..9909813 461..658 570 85.9 Plus
2R 25286936 2R 9909583..9909780 494..691 555 85.4 Plus
2R 25286936 2R 9909638..9909813 450..625 310 78.4 Plus
2R 25286936 2R 9909572..9909747 516..691 295 77.8 Plus
2R 25286936 2R 9909583..9909644 560..621 190 87.1 Plus
2R 25286936 2R 9909682..9909743 461..522 190 87.1 Plus
Blast to na_te.dros performed on 2015-02-06 10:11:25 has no hits.

BS13415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:34 Download gff for BS13415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2346-PA 1..679 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:55 Download gff for BS13415.5prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 103..787 8..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:25 Download gff for BS13415.5prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 103..787 8..695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:25 Download gff for BS13415.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9909139..9909817 17..695 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:55 Download gff for BS13415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5796644..5797322 17..695 99   Plus

BS13415.complete Sequence

1076 bp assembled on 2006-11-01

GenBank Submission: FJ637445

> BS13415.complete
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAAT
TTCATGCGCTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACA
GGATTTCATGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTT
CCGCTCCGCAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATT
CGATTCGGTAAGAGCTTGAAGCCGGCGGCTCCCGAGTCCAAGCCAGTCAA
GTCCAATCAAGGCAACCCAGGCGAACGCAGTCCAGTGGACAAGGCCATGA
CGGAGCTGTTCAAGAAACAGGAGCTGCAGGATCAGCAGGTGAAGAACGGC
GCACAGGCGACCACCACGCAGGATGGGAGTGTGGAACAGGACCAGTTCTT
CGGCCAGTGAAAGCTTTCTAGACCAT

BS13415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1044 CG2346-PA 1..1044 17..1060 5220 100 Plus
FMRFa-RA 1044 CG2346-PA 445..642 494..691 570 85.9 Plus
FMRFa-RA 1044 CG2346-PA 478..675 461..658 570 85.9 Plus
FMRFa-RA 1044 CG2346-PA 434..609 516..691 310 78.4 Plus
FMRFa-RA 1044 CG2346-PA 500..675 450..625 310 78.4 Plus
FMRFa-RA 1044 CG2346-PA 544..605 461..522 190 87.1 Plus
FMRFa-RA 1044 CG2346-PA 445..506 560..621 190 87.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1427 CG2346-RA 109..1152 17..1060 5220 100 Plus
FMRFa-RA 1427 CG2346-RA 553..750 494..691 570 85.9 Plus
FMRFa-RA 1427 CG2346-RA 586..783 461..658 570 85.9 Plus
FMRFa-RA 1427 CG2346-RA 542..717 516..691 310 78.4 Plus
FMRFa-RA 1427 CG2346-RA 608..783 450..625 310 78.4 Plus
FMRFa-RA 1427 CG2346-RA 553..614 560..621 190 87.1 Plus
FMRFa-RA 1427 CG2346-RA 652..713 461..522 190 87.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9909139..9910182 17..1060 5220 100 Plus
2R 25286936 2R 9909616..9909813 461..658 570 85.9 Plus
2R 25286936 2R 9909583..9909780 494..691 570 85.9 Plus
2R 25286936 2R 9909572..9909747 516..691 310 78.4 Plus
2R 25286936 2R 9909638..9909813 450..625 310 78.4 Plus
2R 25286936 2R 9909583..9909644 560..621 190 87.1 Plus
2R 25286936 2R 9909682..9909743 461..522 190 87.1 Plus
Blast to na_te.dros performed on 2014-11-27 14:44:36 has no hits.

BS13415.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:32 Download gff for BS13415.complete
Subject Subject Range Query Range Percent Splice Strand
Fmrf-RA 1..1044 17..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:16 Download gff for BS13415.complete
Subject Subject Range Query Range Percent Splice Strand
Fmrf-RA 106..1155 8..1060 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:47 Download gff for BS13415.complete
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 109..1151 17..1059 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:32 Download gff for BS13415.complete
Subject Subject Range Query Range Percent Splice Strand
Fmrf-RA 106..1155 8..1060 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:49 Download gff for BS13415.complete
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 109..1151 17..1059 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:49 Download gff for BS13415.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9909139..9910181 17..1059 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:47 Download gff for BS13415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5796644..5797686 17..1059 100   Plus

BS13415.pep Sequence

Translation from 16 to 1059

> BS13415.pep
MGIALMFLLALYQMQSAIHSEIIDTPNYAGNSLQDADSEVSPPQDNDLVD
ALLGNDQTERAELEFRHPISVIGIDYSKNAVVLHFQKHGRKPRYKYDPEL
EAKRRSVQDNFMHFGKRQAEQLPPEGSYAESDELEGMAKRAAMDRYGRDP
KQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMR
FGRTPAEDFMRFGRTPAEDFMRFGRSDNFMRFGRSPHEELRSPKQDFMRF
GRPDNFMRFGRSAPQDFVRSGKMDSNFIRFGKSLKPAAPESKPVKSNQGN
PGERSPVDKAMTELFKKQELQDQQVKNGAQATTTQDGSVEQDQFFGQ*

BS13415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-PA 347 CG2346-PA 1..347 1..347 1838 100 Plus