Clone Sequence Records
BS13415.3prime Sequence
689 bp (565 high quality bases) assembled on 2006-10-13
> BS13415.3prime
ATGGTCTAGAAAGCTTTCACTGGCCGAAGAACTGGTCCTGTTCCACACTC
CCATCCTGCGTGGTGGTCGCCTGTGCGCCGTTCTTCACCTGCTGATCCTG
CAGCTCCTGTTTCTTGAACAGCTCCGTCATGGCCTTGTCCACTGGACTGC
GTTCGCCTGGGTTGCCTTGATTGGACTTGACTGGCTTGGACTCGGGAGCC
GCCGGCTTCAAGCTCTTACCGAATCGAATGAAGTTTGAGTCCATCTTCCC
GGAGCGCACAAAATCCTGCGGAGCGGAACGCCCGAAGCGCATGAAGTTGT
CCGGGCGACCGAATCGCATGAAATCCTGTTTGGGACTGCGAAGCTCCTCG
TGGGGACTGCGTCCGAAGCGCATGAAATTGTCGGAGCGTCCGAACCTCAT
GAAGTCCTCCGCCGGAGTGCGTCCGAACCTCATGAAATCCTCAGCCGGAG
TGCGTCCAAACCTCATGAAATCCTGCTTGGGATCTCGACCGAATCTCATG
AAATCCTGCTTGGGATCCCGACCGAATCTCATGAAGTCCTGCTTTGGATC
CCTGCCAAACCTCATGAAATCCTGTTTCGGATCCCGACCAAACCGCATGA
AGTCCTGCTTGGGATCTCTGCCATACCGATCCAATAGCTGCTCGCTTGGC
CATGCCCTCCAGTTCATCGGAATCAGCATAGCTGCCCTC
BS13415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2346-PA | 1044 | Fmrf-RA | 428..1044 | 633..17 | 3060 | 99.8 | Minus |
CG2346-PA | 1044 | Fmrf-RA | 373..428 | 689..634 | 255 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1427 | CG2346-RA | 481..1152 | 689..17 | 3310 | 99.6 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 553..750 | 583..386 | 555 | 85.4 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 586..783 | 616..419 | 555 | 85.4 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 608..815 | 627..414 | 335 | 78 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 542..755 | 561..354 | 320 | 77.6 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 652..713 | 616..555 | 205 | 88.7 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 553..614 | 517..456 | 190 | 87.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9909511..9910182 | 689..17 | 3285 | 99.6 | Minus |
2R | 25286936 | 2R | 9909583..9909780 | 583..386 | 555 | 85.4 | Minus |
2R | 25286936 | 2R | 9909616..9909813 | 616..419 | 555 | 85.4 | Minus |
2R | 25286936 | 2R | 9909638..9909813 | 627..452 | 325 | 79 | Minus |
2R | 25286936 | 2R | 9909572..9909747 | 561..386 | 310 | 78.4 | Minus |
2R | 25286936 | 2R | 9909682..9909743 | 616..555 | 205 | 88.7 | Minus |
2R | 25286936 | 2R | 9909583..9909644 | 517..456 | 190 | 87.1 | Minus |
Blast to na_te.dros performed 2015-02-12 17:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 608..700 | 116..205 | 107 | 59.1 | Plus |
BS13415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:34 Download gff for
BS13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2346-PA | 373..1044 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:13 Download gff for
BS13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 481..1152 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:21 Download gff for
BS13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 481..1152 | 17..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:21 Download gff for
BS13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9909511..9910182 | 17..689 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:13 Download gff for
BS13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5797016..5797687 | 17..689 | 99 | | Minus |
BS13415.5prime Sequence
696 bp (649 high quality bases) assembled on 2006-10-13
> BS13415.5prime
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAAGACTTCATGAGGTTCGGACGCTCCGA
BS13415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2346-PA | 1044 | Fmrf-RA | 1..680 | 17..696 | 3375 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1427 | CG2346-RA | 109..788 | 17..696 | 3385 | 99.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 586..783 | 461..658 | 570 | 85.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..750 | 494..691 | 555 | 85.4 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 608..815 | 450..663 | 320 | 77.6 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 542..717 | 516..691 | 295 | 77.8 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..614 | 560..621 | 190 | 87.1 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 652..713 | 461..522 | 190 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9909139..9909818 | 17..696 | 3385 | 99.9 | Plus |
2R | 25286936 | 2R | 9909616..9909813 | 461..658 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909583..9909780 | 494..691 | 555 | 85.4 | Plus |
2R | 25286936 | 2R | 9909638..9909813 | 450..625 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909572..9909747 | 516..691 | 295 | 77.8 | Plus |
2R | 25286936 | 2R | 9909583..9909644 | 560..621 | 190 | 87.1 | Plus |
2R | 25286936 | 2R | 9909682..9909743 | 461..522 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:11:25 has no hits.
BS13415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:34 Download gff for
BS13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2346-PA | 1..679 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:55 Download gff for
BS13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 103..787 | 8..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:25 Download gff for
BS13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 103..787 | 8..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:25 Download gff for
BS13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9909139..9909817 | 17..695 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:55 Download gff for
BS13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5796644..5797322 | 17..695 | 99 | | Plus |
BS13415.complete Sequence
1076 bp assembled on 2006-11-01
GenBank Submission: FJ637445
> BS13415.complete
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAAT
TTCATGCGCTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACA
GGATTTCATGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTT
CCGCTCCGCAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATT
CGATTCGGTAAGAGCTTGAAGCCGGCGGCTCCCGAGTCCAAGCCAGTCAA
GTCCAATCAAGGCAACCCAGGCGAACGCAGTCCAGTGGACAAGGCCATGA
CGGAGCTGTTCAAGAAACAGGAGCTGCAGGATCAGCAGGTGAAGAACGGC
GCACAGGCGACCACCACGCAGGATGGGAGTGTGGAACAGGACCAGTTCTT
CGGCCAGTGAAAGCTTTCTAGACCAT
BS13415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1044 | CG2346-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 445..642 | 494..691 | 570 | 85.9 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 478..675 | 461..658 | 570 | 85.9 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 434..609 | 516..691 | 310 | 78.4 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 500..675 | 450..625 | 310 | 78.4 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 544..605 | 461..522 | 190 | 87.1 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 445..506 | 560..621 | 190 | 87.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1427 | CG2346-RA | 109..1152 | 17..1060 | 5220 | 100 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..750 | 494..691 | 570 | 85.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 586..783 | 461..658 | 570 | 85.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 542..717 | 516..691 | 310 | 78.4 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 608..783 | 450..625 | 310 | 78.4 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..614 | 560..621 | 190 | 87.1 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 652..713 | 461..522 | 190 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9909139..9910182 | 17..1060 | 5220 | 100 | Plus |
2R | 25286936 | 2R | 9909616..9909813 | 461..658 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909583..9909780 | 494..691 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909572..9909747 | 516..691 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909638..9909813 | 450..625 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909583..9909644 | 560..621 | 190 | 87.1 | Plus |
2R | 25286936 | 2R | 9909682..9909743 | 461..522 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:44:36 has no hits.
BS13415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:32 Download gff for
BS13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:16 Download gff for
BS13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-RA | 106..1155 | 8..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:47 Download gff for
BS13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 109..1151 | 17..1059 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:32 Download gff for
BS13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-RA | 106..1155 | 8..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:49 Download gff for
BS13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 109..1151 | 17..1059 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:49 Download gff for
BS13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9909139..9910181 | 17..1059 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:47 Download gff for
BS13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5796644..5797686 | 17..1059 | 100 | | Plus |
BS13415.pep Sequence
Translation from 16 to 1059
> BS13415.pep
MGIALMFLLALYQMQSAIHSEIIDTPNYAGNSLQDADSEVSPPQDNDLVD
ALLGNDQTERAELEFRHPISVIGIDYSKNAVVLHFQKHGRKPRYKYDPEL
EAKRRSVQDNFMHFGKRQAEQLPPEGSYAESDELEGMAKRAAMDRYGRDP
KQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMR
FGRTPAEDFMRFGRTPAEDFMRFGRSDNFMRFGRSPHEELRSPKQDFMRF
GRPDNFMRFGRSAPQDFVRSGKMDSNFIRFGKSLKPAAPESKPVKSNQGN
PGERSPVDKAMTELFKKQELQDQQVKNGAQATTTQDGSVEQDQFFGQ*
BS13415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-PA | 347 | CG2346-PA | 1..347 | 1..347 | 1838 | 100 | Plus |