Clone Sequence Records
BS13416.3prime Sequence
711 bp (579 high quality bases) assembled on 2006-10-13
> BS13416.3prime
ATGGTCTAGAAAGCTTCTACAGGAAGTTAACATTACTCAGTATGCTTTCG
ATGGTGGAGTTCACCTCGCGCTCCTTGGGCGCCGGATCGCACTGTAGCTG
GAAGTAGCCCGGCAGATCCTGCTCCGCCTCGAACGCACTCGTCCTGTTGG
CGCCCAGCCAGAGGTCGAGTCGATCGTAGATGACTCCAGTGGGTCCCTGC
TGCAGGAACCAGTCGATGGACTCCCGATCCTTGAGGTCCGAGCCCCAGAG
CAGGACAATGGGCACCTGTGCCTTTGCCCGTTGCACCAAACCCGGATCCG
CCTTGACGAACACGGCGTTGGGTGACACGCCGCCCAGATCGAAGGCCTGG
GCAAAGTTGACGCTCTGCTCCACGGTGCTGGTGCGGGGATCGTTGAAGAC
GTTCTCCTTGCTGCTGGAGAGGAAGAGCACCGGGTACATGTGCTGCTTGA
AGCGCAGCAGGGAGCATAAGTCCGCGTCGAAGCTCTTGATCACATTGAGT
CGACCGCAGCCATGTCGTCGCACCACAGCCAGAATGCGATCCGCGAACAG
GTTCTTGTCCAGCGTCTGTTCGCTCTCAAACAGTCCATCGGCCCTCTGCT
GTGGCCACTTGATCTCGATGTCGAATCCGGTGGACAGGTTCCCCCGCTCA
AAGAAATCCTGCAGTGTGGGGAAAAATCCCTTGCTCCGGCGGTTCCACGT
TGGTTGGGCCC
BS13416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-PA | 2040 | CG9394-RA | 1356..2040 | 702..17 | 3290 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2134 | CG9394-RB | 1393..2077 | 702..17 | 3345 | 99.3 | Minus |
| CG9394-RA | 2312 | CG9394-RA | 1571..2255 | 702..17 | 3345 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21119964..21120648 | 702..17 | 3320 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:14:42 has no hits.
BS13416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:35 Download gff for
BS13416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-PA | 1347..2040 | 17..711 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:34:52 Download gff for
BS13416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 1562..2263 | 8..711 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:14 Download gff for
BS13416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 1562..2263 | 8..711 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:14 Download gff for
BS13416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21119955..21120656 | 8..711 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:34:52 Download gff for
BS13416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17007460..17008161 | 8..711 | 98 | | Minus |
BS13416.5prime Sequence
623 bp (570 high quality bases) assembled on 2006-10-13
> BS13416.5prime
GAAGTTATCAGTCGACATGTCGGTGTCCTGGTCGAAGACTTTCGCGGCAT
TCACCGTCGCCTGGCTCAGTGCCCTGTGCCTGCTGCCCGTGGAGACATTC
TGTGACACCTCCTACTACGAGAAGTACTACGCGGCGCGGCGCTATGTGCC
CCTCAAGCGAAATGCTCCGCTGGTCTTCAACTTTACCCTAACGCTGCCGG
ATGCGGATCAACTGGCGTCCTTCGAGCGGCCCGCCCTGGTGGGCAATCTG
CCAGTGCTGGGCGCCTGGCAAGCGGGACGCGCTGTGCTCCTCAACCGCAC
TGCAATCCTGAATGTTTGGAGCGCCTCCGTGGAGATACCGCAAAACAGCA
GCGTTGAGTATCGCTACTTTGCCGCCGCCGTTGGCCAGAGTGGAGCCGTG
CAGATTCGCCGCTGGGAGTCGCATGTCCAGGCAAGGACCTTTAATACCAC
CAAGTTCAGTGGCAATCGCAGCGATGAGTTCGGACTCATTGGCAATGAGC
GCCAGTTGTCGCGTGGCTGGCTTCAGGACTCGGGCAACATTCTGCAGTTG
AAGCTCTTCCGCGAGGCTCTGAGCTTGGAGGAGCAACCGGAGGTGGGGCA
GGAGAAGCTGCGTCTGCGTTTGC
BS13416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-PA | 2040 | CG9394-RA | 1..607 | 17..623 | 3035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2134 | CG9394-RB | 35..644 | 14..623 | 3050 | 100 | Plus |
| CG9394-RA | 2312 | CG9394-RA | 213..822 | 14..623 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21118606..21119215 | 14..623 | 3050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:50:50 has no hits.
BS13416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:35 Download gff for
BS13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-PA | 1..607 | 17..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:41 Download gff for
BS13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 213..822 | 14..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:04 Download gff for
BS13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 213..822 | 14..623 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:04 Download gff for
BS13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21118606..21119215 | 14..623 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:41 Download gff for
BS13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17006111..17006720 | 14..623 | 100 | | Plus |
BS13416.complete Sequence
2072 bp assembled on 2012-04-25
GenBank Submission: KX804728
> BS13416.complete
GAAGTTATCAGTCGACATGTCGGTGTCCTGGTCGAAGACTTTCGCGGCAT
TCACCGTCGCCTGGCTCAGTGCCCTGTGCCTGCTGCCCGTGGAGACATTC
TGTGACACCTCCTACTACGAGAAGTACTACGCGGCGCGGCGCTATGTGCC
CCTCAAGCGAAATGCTCCGCTGGTCTTCAACTTTACCCTAACGCTGCCGG
ATGCGGATCAACTGGCGTCCTTCGAGCGGCCCGCCCTGGTGGGCAATCTG
CCAGTGCTGGGCGCCTGGCAAGCGGGACGCGCTGTGCTCCTCAACCGCAC
TGCAATCCTGAATGTTTGGAGCGCCTCCGTGGAGATACCGCAAAACAGCA
GCGTTGAGTATCGCTACTTTGCCGCCGCCGTTGGCCAGAGTGGAGCCGTG
CAGATTCGCCGCTGGGAGTCGCATGTCCAGGCAAGGACCTTTAATACCAC
CAAGTTCAGTGGCAATCGCAGCGATGAGTTCGGACTCATTGGCAATGAGC
GCCAGTTGTCGCGTGGCTGGCTTCAGGACTCGGGCAACATTCTGCAGTTG
AAGCTCTTCCGCGAGGCTCTGAGCTTGGAGGAGCAACCGGAGGTGGGGCA
GGAGAAGCTGCGTCTGCGTTTGCAACCAGTAGATCCAAAGACTCTAGCGC
CCATCCTAAGTTCGGCACGTGCCAATGTGGAGTACGTGCGAATGGCGTAC
GGTGACAGTAAGCTGCGGGTGCAGCCGGAGTACGGAGTGCCCTACGCCAC
CGGTGACATCCTCATGTTCCATGTGAACCTGGAACAGCTGGATCGAGTGG
CCTATCTGGTGGAAGTTTATGCCGAACAACCGGATGAGGACCTGGTCCGT
CTCCTAGGATACTCGCACCTGCTGCACACCTCGTTCTCCGGCACTGAAGG
CGATGTGTCCATCGACCTTATTTCGCCGCTCTGGCAGCGCGTGGTGGGTC
AACTGCGTATTGAGTACCTGCACATTCGGCCCATGGAGAAGGATGGCTTC
GATCTGCGCACCAGCTTCGCCAACTACTGGCGCTCCAATTGGACAGCCCT
GGAGATTGGCCATCGGGGATTGGGAAAATCTCTTACGGTCACCACGAATG
CGGCTCCGCTTATCGAGAACACGGTGGCCACCATGCTGGCCTCCTCTGAA
TTGGGCGCTGATCTCGTGGAGTTTGATGTGCAGCTGACCAGCGACCTGGT
GCCCATCATCCACCATGATTTTTCCATTCGCGTCTGCATTGACTCGAAGA
CCCCAACGAGCAAAGATGATTTGACCGAGGTGCTGCTAAAGGACATATCC
TATGAGCAGCTCAAGGATCTGAAAACCTACCAGATCGTGGGCAACAAGAT
TGTCGAGTATCCGGCGCACAACAACGTGGAACCGCCGGAGCAGCGACTTT
TCCCCACACTGCAGGACTTCTTTGAGCGGGTGAACCTGTCCACCGGATTC
GACATCGAGATCAAGTGGCCACAGCAGAGGGCCGATGGACTGTTTGAGAG
CGAACAGACGCTGGACAAGAACCTGTTCGCGGATCGCATTCTGGCTGTGG
TGCGACGACATGGCTGCGGTCGACTCAATGTGATCAAGAGCTTCGACGCG
GACTTATGCTCCCTGCTGCGCTTCAAGCAGCACATGTACCCGGTGCTCTT
CCTCTCCAGCAGCAAGGAGAACGTCTTCAACGATCCCCGCACCAGCACCG
TGGAGCAGAGCGTCAACTTTGCCCAGGCCTTCGATCTGGGCGGCGTGTCA
CCCAACGCCGTGTTCGTCAAGGCGGATCCGGGTTTGGTGCAACGGGCAAA
GGCACAGGTGCCCATTGTCCTGCTCTGGGGCTCGGACCTCAAGGATCGGG
AGTCCATCGACTGGTTCCTGCAGCAGGGACCCACTGGAGTCATCTACGAT
CGACTCGACCTCTGGCTGGGCGCCAACAGGACGAGTGCGTTCGAGGCGGA
GCAGGATCTGCCGGGCTACTTCCAGCTACAGTGCGATCCGGCGCCCAAGG
AGCGCGAGGTGAACTCCACCATCGAAAGCATACTGAGTAATGTTAACTTC
CTGTAGAAGCTTTCTAGACCAT
BS13416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2040 | CG9394-PB | 1..2040 | 17..2056 | 10200 | 100 | Plus |
| CG9394-RA | 2040 | CG9394-PA | 1..2040 | 17..2056 | 10200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2134 | CG9394-RB | 35..2077 | 14..2056 | 10215 | 100 | Plus |
| CG9394-RA | 2312 | CG9394-RA | 213..2255 | 14..2056 | 10215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21118606..21120648 | 14..2056 | 10215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:14:28 has no hits.
BS13416.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:53 Download gff for
BS13416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 213..2263 | 14..2065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:40 Download gff for
BS13416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 216..2255 | 17..2056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:25 Download gff for
BS13416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 216..2255 | 17..2056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:16 Download gff for
BS13416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 216..2255 | 17..2056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:14 Download gff for
BS13416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 216..2255 | 17..2056 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:14 Download gff for
BS13416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21118609..21120648 | 17..2056 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:25 Download gff for
BS13416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17006114..17008153 | 17..2056 | 100 | | Plus |
BS13416.pep Sequence
Translation from 16 to 2055
> BS13416.pep
MSVSWSKTFAAFTVAWLSALCLLPVETFCDTSYYEKYYAARRYVPLKRNA
PLVFNFTLTLPDADQLASFERPALVGNLPVLGAWQAGRAVLLNRTAILNV
WSASVEIPQNSSVEYRYFAAAVGQSGAVQIRRWESHVQARTFNTTKFSGN
RSDEFGLIGNERQLSRGWLQDSGNILQLKLFREALSLEEQPEVGQEKLRL
RLQPVDPKTLAPILSSARANVEYVRMAYGDSKLRVQPEYGVPYATGDILM
FHVNLEQLDRVAYLVEVYAEQPDEDLVRLLGYSHLLHTSFSGTEGDVSID
LISPLWQRVVGQLRIEYLHIRPMEKDGFDLRTSFANYWRSNWTALEIGHR
GLGKSLTVTTNAAPLIENTVATMLASSELGADLVEFDVQLTSDLVPIIHH
DFSIRVCIDSKTPTSKDDLTEVLLKDISYEQLKDLKTYQIVGNKIVEYPA
HNNVEPPEQRLFPTLQDFFERVNLSTGFDIEIKWPQQRADGLFESEQTLD
KNLFADRILAVVRRHGCGRLNVIKSFDADLCSLLRFKQHMYPVLFLSSSK
ENVFNDPRTSTVEQSVNFAQAFDLGGVSPNAVFVKADPGLVQRAKAQVPI
VLLWGSDLKDRESIDWFLQQGPTGVIYDRLDLWLGANRTSAFEAEQDLPG
YFQLQCDPAPKEREVNSTIESILSNVNFL*
BS13416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-PB | 679 | CG9394-PB | 1..679 | 1..679 | 3513 | 100 | Plus |
| CG9394-PA | 679 | CG9394-PA | 1..679 | 1..679 | 3513 | 100 | Plus |
| CG18135-PB | 636 | CG18135-PB | 39..634 | 54..656 | 1001 | 37 | Plus |
| CG18135-PE | 649 | CG18135-PE | 52..647 | 54..656 | 1001 | 37 | Plus |
| CG18135-PA | 653 | CG18135-PA | 56..651 | 54..656 | 1001 | 37 | Plus |
