Clone Sequence Records
BS13418.complete Sequence
788 bp assembled on 2010-02-09
GenBank Submission: KX801474
> BS13418.complete
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCGACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTATCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGACTGGTAGAAGTGGTCCCCTTGGTTCCGGGGGCTCTT
CTAACAACTTTTACCGGAGCGAATCCTATAGCTACACATCGGATGGAAGA
GGACCTCCCCAAATCGAGCGGGATGTGTTCGACTCGCGGGATGGATTTGG
ATCATCTTATCGCAACTTTTAAAAGCTTTCTAGACCAT
BS13418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-RB | 756 | CG10680-PB | 1..756 | 17..772 | 3780 | 100 | Plus |
CG10680-RA | 756 | CG10680-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-RB | 1272 | CG10680-RB | 92..859 | 13..780 | 3795 | 99.6 | Plus |
CG10680-RA | 1026 | CG10680-RA | 55..822 | 13..780 | 3795 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19965062..19965289 | 553..780 | 1110 | 99.1 | Plus |
2L | 23513712 | 2L | 19964840..19965013 | 383..556 | 870 | 100 | Plus |
2L | 23513712 | 2L | 19964424..19964581 | 93..250 | 790 | 100 | Plus |
2L | 23513712 | 2L | 19964642..19964775 | 249..382 | 670 | 100 | Plus |
2L | 23513712 | 2L | 19964227..19964281 | 13..67 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:27:03 has no hits.
BS13418.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:21 Download gff for
BS13418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 63..811 | 22..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:29 Download gff for
BS13418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 64..812 | 22..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:42 Download gff for
BS13418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 63..811 | 22..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:03 Download gff for
BS13418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 64..812 | 22..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:03 Download gff for
BS13418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19964236..19964281 | 22..67 | 100 | -> | Plus |
2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
2L | 19964840..19965010 | 383..553 | 100 | -> | Plus |
2L | 19965063..19965279 | 554..770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:29 Download gff for
BS13418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19964236..19964281 | 22..67 | 100 | -> | Plus |
arm_2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
arm_2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
arm_2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
arm_2L | 19964840..19965010 | 383..553 | 100 | -> | Plus |
arm_2L | 19965063..19965279 | 554..770 | 100 | | Plus |
BS13418.5prime Sequence
615 bp (530 high quality bases) assembled on 2006-10-13
> BS13418.5prime
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCAACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTTTCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGAC
BS13418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-PA | 756 | CG10680-RA | 1..599 | 17..615 | 2945 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-RB | 1272 | CG10680-RB | 92..694 | 13..615 | 2970 | 99.5 | Plus |
CG10680-RA | 1026 | CG10680-RA | 55..657 | 13..615 | 2970 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19964840..19965013 | 383..556 | 855 | 99.4 | Plus |
2L | 23513712 | 2L | 19964424..19964581 | 93..250 | 790 | 100 | Plus |
2L | 23513712 | 2L | 19964642..19964775 | 249..382 | 670 | 100 | Plus |
2L | 23513712 | 2L | 19965062..19965124 | 553..615 | 300 | 98.4 | Plus |
2L | 23513712 | 2L | 19964227..19964281 | 13..67 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:31:31 has no hits.
BS13418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:36 Download gff for
BS13418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-PA | 1..599 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:47 Download gff for
BS13418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 48..657 | 3..615 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:02:02 Download gff for
BS13418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 48..657 | 3..615 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:02:02 Download gff for
BS13418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19964220..19964281 | 3..67 | 92 | -> | Plus |
2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
2L | 19964840..19965010 | 383..553 | 99 | -> | Plus |
2L | 19965063..19965124 | 554..615 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:47 Download gff for
BS13418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19964220..19964281 | 3..67 | 92 | -> | Plus |
arm_2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
arm_2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
arm_2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
arm_2L | 19964840..19965010 | 383..553 | 99 | -> | Plus |
arm_2L | 19965063..19965124 | 554..615 | 98 | | Plus |
BS13418.pep Sequence
Translation from 16 to 771
> BS13418.pep
MLPLQFVLLGCLFIAQGICHTLPDPKLRVPRETINIPTHLFKPVSPKSSN
KPISNRSSLNGGNSSALAEANNDVEFLERSSGEVEEVTDTYEEEDVPLRP
IPFQPRPFYPQIPPRSNGFPIRQPNYDNAFQTDYNVGPRGSGFDNRPFPS
SPDFRGRGIRPIPDSPFRNQNLGTFVSRPVPMPSSGSIIPLIAGGSSIPT
GRSGPLGSGGSSNNFYRSESYSYTSDGRGPPQIERDVFDSRDGFGSSYRN
F*
BS13418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-PB | 251 | CG10680-PB | 1..251 | 1..251 | 1343 | 100 | Plus |
CG10680-PA | 251 | CG10680-PA | 1..251 | 1..251 | 1343 | 100 | Plus |