Clone BS13418 Report

Search the DGRC for BS13418

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG10680-RA
Protein status:BS13418.pep: full length peptide match
Sequenced Size:788

Clone Sequence Records

BS13418.complete Sequence

788 bp assembled on 2010-02-09

GenBank Submission: KX801474

> BS13418.complete
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCGACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTATCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGACTGGTAGAAGTGGTCCCCTTGGTTCCGGGGGCTCTT
CTAACAACTTTTACCGGAGCGAATCCTATAGCTACACATCGGATGGAAGA
GGACCTCCCCAAATCGAGCGGGATGTGTTCGACTCGCGGGATGGATTTGG
ATCATCTTATCGCAACTTTTAAAAGCTTTCTAGACCAT

BS13418.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-RB 756 CG10680-PB 1..756 17..772 3780 100 Plus
CG10680-RA 756 CG10680-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-RB 1272 CG10680-RB 92..859 13..780 3795 99.6 Plus
CG10680-RA 1026 CG10680-RA 55..822 13..780 3795 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19965062..19965289 553..780 1110 99.1 Plus
2L 23513712 2L 19964840..19965013 383..556 870 100 Plus
2L 23513712 2L 19964424..19964581 93..250 790 100 Plus
2L 23513712 2L 19964642..19964775 249..382 670 100 Plus
2L 23513712 2L 19964227..19964281 13..67 260 98.2 Plus
Blast to na_te.dros performed on 2014-11-28 04:27:03 has no hits.

BS13418.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:21 Download gff for BS13418.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 63..811 22..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:29 Download gff for BS13418.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 64..812 22..770 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:42 Download gff for BS13418.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 63..811 22..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:03 Download gff for BS13418.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 64..812 22..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:03 Download gff for BS13418.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19964236..19964281 22..67 100 -> Plus
2L 19964339..19964365 68..94 100 -> Plus
2L 19964426..19964581 95..250 100 -> Plus
2L 19964644..19964775 251..382 100 -> Plus
2L 19964840..19965010 383..553 100 -> Plus
2L 19965063..19965279 554..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:29 Download gff for BS13418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19964236..19964281 22..67 100 -> Plus
arm_2L 19964339..19964365 68..94 100 -> Plus
arm_2L 19964426..19964581 95..250 100 -> Plus
arm_2L 19964644..19964775 251..382 100 -> Plus
arm_2L 19964840..19965010 383..553 100 -> Plus
arm_2L 19965063..19965279 554..770 100   Plus

BS13418.5prime Sequence

615 bp (530 high quality bases) assembled on 2006-10-13

> BS13418.5prime
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCAACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTTTCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGAC

BS13418.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-PA 756 CG10680-RA 1..599 17..615 2945 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-RB 1272 CG10680-RB 92..694 13..615 2970 99.5 Plus
CG10680-RA 1026 CG10680-RA 55..657 13..615 2970 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19964840..19965013 383..556 855 99.4 Plus
2L 23513712 2L 19964424..19964581 93..250 790 100 Plus
2L 23513712 2L 19964642..19964775 249..382 670 100 Plus
2L 23513712 2L 19965062..19965124 553..615 300 98.4 Plus
2L 23513712 2L 19964227..19964281 13..67 260 98.2 Plus
Blast to na_te.dros performed on 2015-02-11 18:31:31 has no hits.

BS13418.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:36 Download gff for BS13418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-PA 1..599 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:47 Download gff for BS13418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 48..657 3..615 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:02:02 Download gff for BS13418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 48..657 3..615 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:02:02 Download gff for BS13418.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19964220..19964281 3..67 92 -> Plus
2L 19964339..19964365 68..94 100 -> Plus
2L 19964426..19964581 95..250 100 -> Plus
2L 19964644..19964775 251..382 100 -> Plus
2L 19964840..19965010 383..553 99 -> Plus
2L 19965063..19965124 554..615 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:47 Download gff for BS13418.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19964220..19964281 3..67 92 -> Plus
arm_2L 19964339..19964365 68..94 100 -> Plus
arm_2L 19964426..19964581 95..250 100 -> Plus
arm_2L 19964644..19964775 251..382 100 -> Plus
arm_2L 19964840..19965010 383..553 99 -> Plus
arm_2L 19965063..19965124 554..615 98   Plus

BS13418.pep Sequence

Translation from 16 to 771

> BS13418.pep
MLPLQFVLLGCLFIAQGICHTLPDPKLRVPRETINIPTHLFKPVSPKSSN
KPISNRSSLNGGNSSALAEANNDVEFLERSSGEVEEVTDTYEEEDVPLRP
IPFQPRPFYPQIPPRSNGFPIRQPNYDNAFQTDYNVGPRGSGFDNRPFPS
SPDFRGRGIRPIPDSPFRNQNLGTFVSRPVPMPSSGSIIPLIAGGSSIPT
GRSGPLGSGGSSNNFYRSESYSYTSDGRGPPQIERDVFDSRDGFGSSYRN
F*

BS13418.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-PB 251 CG10680-PB 1..251 1..251 1343 100 Plus
CG10680-PA 251 CG10680-PA 1..251 1..251 1343 100 Plus