Clone Sequence Records
BS13421.3prime Sequence
360 bp (360 high quality bases) assembled on 2006-10-13
> BS13421.3prime
ATGGTCTAGAAAGCTTCTAGTGCTCGTAGCCGTCGGGCAGGGCGTTAACG
TGGGGGTTGTGGAACAGGCTCTTCTGGCCCTCACCCCAGGGGAAGCGCTT
CTCGCGGCGGCGCAGGTAGTCGTACTTGACGAACTCCTGGCGGGGCTTGT
CGTGCTCCTCCTGGTGCTTCAGGTAGGCGTTCAGCATGCACAGTCCCACG
GCGGGCACGGCCACGAAGAAGGACAGGCGCTTCCACACCTTGTAGCCACC
AGAGTGCTCGCCGGCCACGGCGGCGGTGCCGGACATATTCCGGGCGGCAG
AAGCGCCGAATTGGCGGCGAATTGCGTGGTTTAGAATAGCGGACATGTCG
ACTGATAACT
BS13421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17280-PA | 330 | CG17280-RA | 1..330 | 346..17 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 490 | CG17280-RB | 52..381 | 346..17 | 1650 | 100 | Minus |
levy-RA | 593 | CG17280-RA | 52..381 | 346..17 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23548537..23548770 | 250..17 | 1170 | 100 | Minus |
2R | 25286936 | 2R | 23548290..23548388 | 346..248 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:23:19 has no hits.
BS13421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:38 Download gff for
BS13421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17280-PA | 1..330 | 17..346 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:06 Download gff for
BS13421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..381 | 17..346 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:52 Download gff for
BS13421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..381 | 17..346 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:52 Download gff for
BS13421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23548290..23548386 | 250..346 | 100 | -> | Minus |
2R | 23548538..23548770 | 17..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:06 Download gff for
BS13421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19435813..19435909 | 250..346 | 100 | -> | Minus |
arm_2R | 19436061..19436293 | 17..249 | 100 | | Minus |
BS13421.5prime Sequence
360 bp (360 high quality bases) assembled on 2006-10-13
> BS13421.5prime
GAAGTTATCAGTCGACATGTCCGCTATTCTAAACCACGCAATTCGCCGCC
AATTCGGCGCTTCTGCCGCCCGGAATATGTCCGGCACCGCCGCCGTGGCC
GGCGAGCACTCTGGTGGCTACAAGGTGTGGAAGCGCCTGTCCTTCTTCGT
GGCCGTGCCCGCCGTGGGACTGTGCATGCTGAACGCCTACCTGAAGCACC
AGGAGGAGCACGACAAGCCCCGCCAGGAGTTCGTCAAGTACGACTACCTG
CGCCGCCGCGAGAAGCGCTTCCCCTGGGGTGAGGGCCAGAAGAGCCTGTT
CCACAACCCCCACGTTAACGCCCTGCCCGACGGCTACGAGCACTAGAAGC
TTTCTAGACC
BS13421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17280-PA | 330 | CG17280-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 490 | CG17280-RB | 52..381 | 17..346 | 1650 | 100 | Plus |
levy-RA | 593 | CG17280-RA | 52..381 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23548537..23548770 | 113..346 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 23548290..23548388 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:00:30 has no hits.
BS13421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:38 Download gff for
BS13421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17280-PA | 1..330 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:14 Download gff for
BS13421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..381 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:30 Download gff for
BS13421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..381 | 17..346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:30 Download gff for
BS13421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23548290..23548386 | 17..113 | 100 | -> | Plus |
2R | 23548538..23548770 | 114..346 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:14 Download gff for
BS13421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19435813..19435909 | 17..113 | 100 | -> | Plus |
arm_2R | 19436061..19436293 | 114..346 | 100 | | Plus |
BS13421.complete Sequence
362 bp assembled on 2006-11-01
GenBank Submission: FJ637446
> BS13421.complete
GAAGTTATCAGTCGACATGTCCGCTATTCTAAACCACGCAATTCGCCGCC
AATTCGGCGCTTCTGCCGCCCGGAATATGTCCGGCACCGCCGCCGTGGCC
GGCGAGCACTCTGGTGGCTACAAGGTGTGGAAGCGCCTGTCCTTCTTCGT
GGCCGTGCCCGCCGTGGGACTGTGCATGCTGAACGCCTACCTGAAGCACC
AGGAGGAGCACGACAAGCCCCGCCAGGAGTTCGTCAAGTACGACTACCTG
CGCCGCCGCGAGAAGCGCTTCCCCTGGGGTGAGGGCCAGAAGAGCCTGTT
CCACAACCCCCACGTTAACGCCCTGCCCGACGGCTACGAGCACTAGAAGC
TTTCTAGACCAT
BS13421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 330 | CG17280-PB | 1..330 | 17..346 | 1650 | 100 | Plus |
levy-RA | 330 | CG17280-PA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 490 | CG17280-RB | 52..381 | 17..346 | 1650 | 100 | Plus |
levy-RA | 593 | CG17280-RA | 52..381 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23548537..23548770 | 113..346 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 23548290..23548388 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:00:34 has no hits.
BS13421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:08 Download gff for
BS13421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 1..330 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:46 Download gff for
BS13421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 51..380 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:57 Download gff for
BS13421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..381 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:08 Download gff for
BS13421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 51..380 | 17..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:51 Download gff for
BS13421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..381 | 17..346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:51 Download gff for
BS13421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23548290..23548386 | 17..113 | 100 | -> | Plus |
2R | 23548538..23548770 | 114..346 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:57 Download gff for
BS13421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19435813..19435909 | 17..113 | 100 | -> | Plus |
arm_2R | 19436061..19436293 | 114..346 | 100 | | Plus |
BS13421.pep Sequence
Translation from 16 to 345
> BS13421.pep
MSAILNHAIRRQFGASAARNMSGTAAVAGEHSGGYKVWKRLSFFVAVPAV
GLCMLNAYLKHQEEHDKPRQEFVKYDYLRRREKRFPWGEGQKSLFHNPHV
NALPDGYEH*
BS13421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-PB | 109 | CG17280-PB | 1..109 | 1..109 | 590 | 100 | Plus |
levy-PA | 109 | CG17280-PA | 1..109 | 1..109 | 590 | 100 | Plus |
CG30093-PA | 94 | CG30093-PA | 19..87 | 37..108 | 234 | 56.9 | Plus |
CG14077-PB | 289 | CG14077-PB | 153..229 | 27..108 | 141 | 36.1 | Plus |
CG14077-PC | 289 | CG14077-PC | 153..229 | 27..108 | 141 | 36.1 | Plus |