Clone Sequence Records
BS13423.3prime Sequence
498 bp (467 high quality bases) assembled on 2006-10-13
> BS13423.3prime
ATGGTCTAGAAAGCTTTTAGAGTCTCCAGGCGGCGACAAGACCGCTGATC
AGCAGCGTCATGGAGATGATCAACTGGGCACCGCTGTCGCGTGCCAGCGG
AATGTTGGTATCATTGGCCAGCAGAAAGTTGCAGCCGCGTCCCTCGCACG
TATAACAGTTGCCATCCTTGACGCACTGCTTCCTGGCATTCGCCGAGGTG
AGACAGCCGCGCTGGAAGGATCCGTCCACGGTGCGATTGCTATTGCGAAT
GTAGCACTTGTCGCCGAACTTGTACAGCGGGCAGATCTTGGCCGATACAT
AGGTCTCTGTGGCGCAGGACGACGAGGTCGAGTTCCCTGTGCACTGTAGG
CACATGAGGCGGCTCAACGGGAAGGTGTTTCGATTGCATCCCTCGCTGTA
GGTGCACAGCTGGCACAGTAGCTCGTTGTTGCACGAATTACGCGTGGCGT
TTGTCCAGATCGACGGCACAGCCGCGAATTGTGTAGCCATCCAGGACG
BS13423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-PA | 645 | CG15347-RA | 211..645 | 451..17 | 2175 | 100 | Minus |
CG15347-PA | 645 | CG15347-RA | 165..212 | 498..451 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RB | 968 | CG15347-RB | 285..765 | 498..17 | 2385 | 99.8 | Minus |
CG15347-RA | 923 | CG15347-RA | 240..720 | 498..17 | 2385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8458697..8459170 | 17..491 | 2325 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:50:14 has no hits.
BS13423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:40 Download gff for
BS13423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-PA | 165..645 | 17..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:58 Download gff for
BS13423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 240..720 | 17..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:02 Download gff for
BS13423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 240..720 | 17..498 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:02 Download gff for
BS13423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8458697..8459174 | 17..498 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:58 Download gff for
BS13423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8352730..8353207 | 17..498 | 98 | | Plus |
BS13423.5prime Sequence
533 bp (492 high quality bases) assembled on 2006-10-13
> BS13423.5prime
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCG
BS13423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-PA | 645 | CG15347-RA | 1..517 | 17..533 | 2585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RA | 923 | CG15347-RA | 75..592 | 16..533 | 2590 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 178..637 | 74..533 | 2300 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 75..133 | 16..74 | 295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8458825..8459170 | 533..188 | 1730 | 100 | Minus |
X | 23542271 | X | 8459224..8459338 | 188..74 | 575 | 100 | Minus |
X | 23542271 | X | 8460766..8460824 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:50:31 has no hits.
BS13423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:40 Download gff for
BS13423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-PA | 1..517 | 17..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:02 Download gff for
BS13423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 63..592 | 1..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:08 Download gff for
BS13423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 63..592 | 1..533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:08 Download gff for
BS13423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8458825..8459169 | 189..533 | 100 | <- | Minus |
X | 8459224..8459337 | 75..188 | 100 | <- | Minus |
X | 8460766..8460834 | 1..74 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:02 Download gff for
BS13423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8352858..8353202 | 189..533 | 100 | <- | Minus |
arm_X | 8353257..8353370 | 75..188 | 100 | <- | Minus |
arm_X | 8354799..8354867 | 1..74 | 93 | | Minus |
BS13423.complete Sequence
677 bp assembled on 2006-11-01
GenBank Submission: FJ637447
> BS13423.complete
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGCTGCAAC
TTTCTGCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAGCGGTGC
CCAGTTGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCGCCGCCT
GGAGACTCTAAAAGCTTTCTAGACCAT
BS13423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RA | 645 | CG15347-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG15347-RB | 690 | CG15347-PB | 103..690 | 74..661 | 2940 | 100 | Plus |
CG15347-RB | 690 | CG15347-PB | 1..58 | 17..74 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RA | 923 | CG15347-RA | 75..720 | 16..661 | 3230 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 178..765 | 74..661 | 2940 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 75..133 | 16..74 | 295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8458697..8459170 | 661..188 | 2370 | 100 | Minus |
X | 23542271 | X | 8459224..8459338 | 188..74 | 575 | 100 | Minus |
X | 23542271 | X | 8460766..8460824 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:43:49 has no hits.
BS13423.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:09 Download gff for
BS13423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:48 Download gff for
BS13423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 59..716 | 1..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:23 Download gff for
BS13423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 76..718 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:09 Download gff for
BS13423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 59..716 | 1..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:04 Download gff for
BS13423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 76..718 | 17..659 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:04 Download gff for
BS13423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8458699..8459169 | 189..659 | 100 | <- | Minus |
X | 8459224..8459337 | 75..188 | 100 | <- | Minus |
X | 8460766..8460823 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:23 Download gff for
BS13423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8352732..8353202 | 189..659 | 100 | <- | Minus |
arm_X | 8353257..8353370 | 75..188 | 100 | <- | Minus |
arm_X | 8354799..8354856 | 17..74 | 100 | | Minus |
BS13423.pep Sequence
Translation from 16 to 660
> BS13423.pep
MKFYLLVIAALSFLAYISCDGCIQCNSKDNERCATDPLSLLNRNCSDGSS
NCYSRVLDGYTIRGCAVDLDNATRNSCNNELLCQLCTYSEGCNRNTFPLS
RLMCLQCTGNSTSSSCATETYVSAKICPLYKFGDKCYIRNSNRTVDGSFQ
RGCLTSANARKQCVKDGNCYTCEGRGCNFLLANDTNIPLARDSGAQLIIS
MTLLISGLVAAWRL*
BS13423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-PA | 214 | CG15347-PA | 1..214 | 1..214 | 1158 | 100 | Plus |
CG15347-PB | 229 | CG15347-PB | 1..229 | 1..214 | 1132 | 93.4 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2799..2975 | 22..211 | 204 | 26.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1538..1695 | 22..178 | 184 | 31.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 698..849 | 22..178 | 176 | 31.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1963..2114 | 22..178 | 176 | 32.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2382..2540 | 22..183 | 174 | 31.5 | Plus |
CG13492-PD | 2979 | CG13492-PD | 278..432 | 22..178 | 169 | 33.9 | Plus |
CG15773-PB | 319 | CG15773-PB | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG15773-PA | 478 | CG15773-PA | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2638..2790 | 22..180 | 162 | 29.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1120..1271 | 22..178 | 154 | 26.9 | Plus |