Clone BS13423 Report

Search the DGRC for BS13423

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG15347-RA
Protein status:BS13423.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13423.3prime Sequence

498 bp (467 high quality bases) assembled on 2006-10-13

> BS13423.3prime
ATGGTCTAGAAAGCTTTTAGAGTCTCCAGGCGGCGACAAGACCGCTGATC
AGCAGCGTCATGGAGATGATCAACTGGGCACCGCTGTCGCGTGCCAGCGG
AATGTTGGTATCATTGGCCAGCAGAAAGTTGCAGCCGCGTCCCTCGCACG
TATAACAGTTGCCATCCTTGACGCACTGCTTCCTGGCATTCGCCGAGGTG
AGACAGCCGCGCTGGAAGGATCCGTCCACGGTGCGATTGCTATTGCGAAT
GTAGCACTTGTCGCCGAACTTGTACAGCGGGCAGATCTTGGCCGATACAT
AGGTCTCTGTGGCGCAGGACGACGAGGTCGAGTTCCCTGTGCACTGTAGG
CACATGAGGCGGCTCAACGGGAAGGTGTTTCGATTGCATCCCTCGCTGTA
GGTGCACAGCTGGCACAGTAGCTCGTTGTTGCACGAATTACGCGTGGCGT
TTGTCCAGATCGACGGCACAGCCGCGAATTGTGTAGCCATCCAGGACG

BS13423.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-PA 645 CG15347-RA 211..645 451..17 2175 100 Minus
CG15347-PA 645 CG15347-RA 165..212 498..451 240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RB 968 CG15347-RB 285..765 498..17 2385 99.8 Minus
CG15347-RA 923 CG15347-RA 240..720 498..17 2385 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8458697..8459170 17..491 2325 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 15:50:14 has no hits.

BS13423.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:40 Download gff for BS13423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-PA 165..645 17..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:58 Download gff for BS13423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 240..720 17..498 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:02 Download gff for BS13423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 240..720 17..498 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:02 Download gff for BS13423.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8458697..8459174 17..498 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:58 Download gff for BS13423.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8352730..8353207 17..498 98   Plus

BS13423.5prime Sequence

533 bp (492 high quality bases) assembled on 2006-10-13

> BS13423.5prime
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCG

BS13423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-PA 645 CG15347-RA 1..517 17..533 2585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RA 923 CG15347-RA 75..592 16..533 2590 100 Plus
CG15347-RB 968 CG15347-RB 178..637 74..533 2300 100 Plus
CG15347-RB 968 CG15347-RB 75..133 16..74 295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8458825..8459170 533..188 1730 100 Minus
X 23542271 X 8459224..8459338 188..74 575 100 Minus
X 23542271 X 8460766..8460824 74..16 295 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:50:31 has no hits.

BS13423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:40 Download gff for BS13423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-PA 1..517 17..533 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:02 Download gff for BS13423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 63..592 1..533 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:08 Download gff for BS13423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 63..592 1..533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:08 Download gff for BS13423.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8458825..8459169 189..533 100 <- Minus
X 8459224..8459337 75..188 100 <- Minus
X 8460766..8460834 1..74 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:02 Download gff for BS13423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8352858..8353202 189..533 100 <- Minus
arm_X 8353257..8353370 75..188 100 <- Minus
arm_X 8354799..8354867 1..74 93   Minus

BS13423.complete Sequence

677 bp assembled on 2006-11-01

GenBank Submission: FJ637447

> BS13423.complete
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGCTGCAAC
TTTCTGCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAGCGGTGC
CCAGTTGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCGCCGCCT
GGAGACTCTAAAAGCTTTCTAGACCAT

BS13423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RA 645 CG15347-PA 1..645 17..661 3225 100 Plus
CG15347-RB 690 CG15347-PB 103..690 74..661 2940 100 Plus
CG15347-RB 690 CG15347-PB 1..58 17..74 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RA 923 CG15347-RA 75..720 16..661 3230 100 Plus
CG15347-RB 968 CG15347-RB 178..765 74..661 2940 100 Plus
CG15347-RB 968 CG15347-RB 75..133 16..74 295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8458697..8459170 661..188 2370 100 Minus
X 23542271 X 8459224..8459338 188..74 575 100 Minus
X 23542271 X 8460766..8460824 74..16 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:43:49 has no hits.

BS13423.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:09 Download gff for BS13423.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 1..645 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:48 Download gff for BS13423.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 59..716 1..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:23 Download gff for BS13423.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 76..718 17..659 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:09 Download gff for BS13423.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 59..716 1..661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:04 Download gff for BS13423.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 76..718 17..659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:04 Download gff for BS13423.complete
Subject Subject Range Query Range Percent Splice Strand
X 8458699..8459169 189..659 100 <- Minus
X 8459224..8459337 75..188 100 <- Minus
X 8460766..8460823 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:23 Download gff for BS13423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8352732..8353202 189..659 100 <- Minus
arm_X 8353257..8353370 75..188 100 <- Minus
arm_X 8354799..8354856 17..74 100   Minus

BS13423.pep Sequence

Translation from 16 to 660

> BS13423.pep
MKFYLLVIAALSFLAYISCDGCIQCNSKDNERCATDPLSLLNRNCSDGSS
NCYSRVLDGYTIRGCAVDLDNATRNSCNNELLCQLCTYSEGCNRNTFPLS
RLMCLQCTGNSTSSSCATETYVSAKICPLYKFGDKCYIRNSNRTVDGSFQ
RGCLTSANARKQCVKDGNCYTCEGRGCNFLLANDTNIPLARDSGAQLIIS
MTLLISGLVAAWRL*

BS13423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-PA 214 CG15347-PA 1..214 1..214 1158 100 Plus
CG15347-PB 229 CG15347-PB 1..229 1..214 1132 93.4 Plus
CG13492-PD 2979 CG13492-PD 2799..2975 22..211 204 26.9 Plus
CG13492-PD 2979 CG13492-PD 1538..1695 22..178 184 31.7 Plus
CG13492-PD 2979 CG13492-PD 698..849 22..178 176 31.1 Plus
CG13492-PD 2979 CG13492-PD 1963..2114 22..178 176 32.7 Plus
CG13492-PD 2979 CG13492-PD 2382..2540 22..183 174 31.5 Plus
CG13492-PD 2979 CG13492-PD 278..432 22..178 169 33.9 Plus
CG15773-PB 319 CG15773-PB 25..177 14..178 163 29.2 Plus
CG15773-PA 478 CG15773-PA 25..177 14..178 163 29.2 Plus
CG13492-PD 2979 CG13492-PD 2638..2790 22..180 162 29.9 Plus
CG13492-PD 2979 CG13492-PD 1120..1271 22..178 154 26.9 Plus