Clone Sequence Records
BS13427.5prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS13427.5prime
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCTAGAAGCTTTCTA
GACC
BS13427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11315-PA | 474 | CG11315-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
CG11315-PB | 393 | CG11315-RB | 1..308 | 17..324 | 1540 | 100 | Plus |
CG11315-PB | 393 | CG11315-RB | 309..393 | 406..490 | 425 | 100 | Plus |
CG11314-PA | 480 | CG11314-RA | 198..290 | 208..300 | 315 | 93.5 | Plus |
CG11314-PA | 480 | CG11314-RA | 391..478 | 401..488 | 265 | 92 | Plus |
CG11314-PA | 480 | CG11314-RA | 307..344 | 317..354 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..504 | 16..490 | 2375 | 100 | Plus |
Npc2h-RA | 812 | CG11315-RA | 30..504 | 16..490 | 2375 | 100 | Plus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 16..324 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745787..30746261 | 490..16 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 30744756..30745180 | 488..64 | 880 | 80.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:24:05 has no hits.
BS13427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:43 Download gff for
BS13427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:13 Download gff for
BS13427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 23..506 | 12..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:59 Download gff for
BS13427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 25..508 | 12..493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:59 Download gff for
BS13427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745783..30746266 | 12..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:13 Download gff for
BS13427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571505..26571988 | 12..493 | 99 | | Minus |
BS13427.3prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS13427.3prime
ATGGTCTAGAAAGCTTCTAGCGCACCACCTTGATGTCGATGGTGAAGCAG
CAACGTTTCTGGGAAACCGGATCCTTCAGGGCCCAACGGATGGTGTATGG
ACTCAGCGGGAACCTGGCGTCGGCGGGCATGTTGTTGGTGTAGGTCTGGG
TGACTCCGGATCTCACGGGGCAGGTGGTGTACTTGCAGGCCTCCTGGTCC
ATGGTAAGCAGGGGCAGCTCCACGTTCTCGCTCTTGGCCCAGCCCAAGCT
GGCCACCAGGGTGTCCGCATCGAAGTGGGGCGTAAAGTCGAAGCTCATCG
TGAAGCGGTGCCTCCGGCGAATGTGGCATGCGGCATTGGCATTGGCTTCC
GGACAGGGCGTCACCCGCACCTGACTAATCGAGCAGGAGTCCACACTATC
TTCGCAAGTCTGAAAGTTGACTATCTCAGCGGAGACGGATGACAACACCA
GAGCAAAGGCGACAGGCAGGAGCGAACTCAGACGCAACATGTCGACTGAT
AACT
BS13427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11315-PA | 474 | CG11315-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
CG11315-PB | 393 | CG11315-RB | 1..308 | 490..183 | 1540 | 100 | Minus |
CG11315-PB | 393 | CG11315-RB | 309..393 | 101..17 | 425 | 100 | Minus |
CG11314-PA | 480 | CG11314-RA | 198..290 | 299..207 | 315 | 93.5 | Minus |
CG11314-PA | 480 | CG11314-RA | 391..478 | 106..19 | 265 | 92 | Minus |
CG11314-PA | 480 | CG11314-RA | 307..344 | 190..153 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..504 | 491..17 | 2375 | 100 | Minus |
Npc2h-RA | 812 | CG11315-RA | 30..504 | 491..17 | 2375 | 100 | Minus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 491..183 | 1545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745787..30746261 | 17..491 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 30744756..30745180 | 19..443 | 880 | 80.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:38:40 has no hits.
BS13427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:43 Download gff for
BS13427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:32 Download gff for
BS13427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 23..506 | 14..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:14 Download gff for
BS13427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 25..508 | 14..495 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:14 Download gff for
BS13427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745783..30746266 | 14..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:32 Download gff for
BS13427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571505..26571988 | 14..495 | 99 | | Plus |
BS13427.complete Sequence
506 bp assembled on 2006-11-01
GenBank Submission: FJ637448
> BS13427.complete
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCTAGAAGCTTTCTA
GACCAT
BS13427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 474 | CG11315-PC | 1..474 | 17..490 | 2370 | 100 | Plus |
Npc2h-RA | 474 | CG11315-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Npc2h-RB | 393 | CG11315-PB | 1..308 | 17..324 | 1540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..504 | 16..490 | 2375 | 100 | Plus |
Npc2h-RA | 812 | CG11315-RA | 30..504 | 16..490 | 2375 | 100 | Plus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 16..324 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745787..30746261 | 490..16 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 30744756..30745180 | 488..64 | 880 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:45:57 has no hits.
BS13427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:10 Download gff for
BS13427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:49 Download gff for
BS13427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-RA | 23..506 | 12..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:20 Download gff for
BS13427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 34..502 | 22..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:11 Download gff for
BS13427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-RA | 23..506 | 12..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:44 Download gff for
BS13427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 36..504 | 22..490 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:44 Download gff for
BS13427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745787..30746255 | 22..490 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:20 Download gff for
BS13427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571509..26571977 | 22..490 | 100 | | Minus |
BS13427.pep Sequence
Translation from 16 to 489
> BS13427.pep
MLRLSSLLPVAFALVLSSVSAEIVNFQTCEDSVDSCSISQVRVTPCPEAN
ANAACHIRRRHRFTMSFDFTPHFDADTLVASLGWAKSENVELPLLTMDQE
ACKYTTCPVRSGVTQTYTNNMPADARFPLSPYTIRWALKDPVSQKRCCFT
IDIKVVR*
BS13427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-PC | 157 | CG11315-PC | 1..157 | 1..157 | 827 | 100 | Plus |
Npc2h-PA | 157 | CG11315-PA | 1..157 | 1..157 | 827 | 100 | Plus |
Npc2g-PB | 159 | CG11314-PB | 1..159 | 1..157 | 643 | 78 | Plus |
Npc2g-PA | 159 | CG11314-PA | 1..159 | 1..157 | 643 | 78 | Plus |
Npc2h-PB | 130 | CG11315-PB | 1..130 | 1..157 | 638 | 82.2 | Plus |