Clone BS13427 Report

Search the DGRC for BS13427

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2h-RA
Protein status:BS13427.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13427.5prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-13

> BS13427.5prime
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCTAGAAGCTTTCTA
GACC

BS13427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11315-PA 474 CG11315-RA 1..474 17..490 2370 100 Plus
CG11315-PB 393 CG11315-RB 1..308 17..324 1540 100 Plus
CG11315-PB 393 CG11315-RB 309..393 406..490 425 100 Plus
CG11314-PA 480 CG11314-RA 198..290 208..300 315 93.5 Plus
CG11314-PA 480 CG11314-RA 391..478 401..488 265 92 Plus
CG11314-PA 480 CG11314-RA 307..344 317..354 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..504 16..490 2375 100 Plus
Npc2h-RA 812 CG11315-RA 30..504 16..490 2375 100 Plus
Npc2h-RB 731 CG11315-RB 30..338 16..324 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745787..30746261 490..16 2375 100 Minus
3R 32079331 3R 30744756..30745180 488..64 880 80.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:24:05 has no hits.

BS13427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:43 Download gff for BS13427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:13 Download gff for BS13427.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 23..506 12..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:59 Download gff for BS13427.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 25..508 12..493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:59 Download gff for BS13427.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30745783..30746266 12..493 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:13 Download gff for BS13427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571505..26571988 12..493 99   Minus

BS13427.3prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-13

> BS13427.3prime
ATGGTCTAGAAAGCTTCTAGCGCACCACCTTGATGTCGATGGTGAAGCAG
CAACGTTTCTGGGAAACCGGATCCTTCAGGGCCCAACGGATGGTGTATGG
ACTCAGCGGGAACCTGGCGTCGGCGGGCATGTTGTTGGTGTAGGTCTGGG
TGACTCCGGATCTCACGGGGCAGGTGGTGTACTTGCAGGCCTCCTGGTCC
ATGGTAAGCAGGGGCAGCTCCACGTTCTCGCTCTTGGCCCAGCCCAAGCT
GGCCACCAGGGTGTCCGCATCGAAGTGGGGCGTAAAGTCGAAGCTCATCG
TGAAGCGGTGCCTCCGGCGAATGTGGCATGCGGCATTGGCATTGGCTTCC
GGACAGGGCGTCACCCGCACCTGACTAATCGAGCAGGAGTCCACACTATC
TTCGCAAGTCTGAAAGTTGACTATCTCAGCGGAGACGGATGACAACACCA
GAGCAAAGGCGACAGGCAGGAGCGAACTCAGACGCAACATGTCGACTGAT
AACT

BS13427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11315-PA 474 CG11315-RA 1..474 490..17 2370 100 Minus
CG11315-PB 393 CG11315-RB 1..308 490..183 1540 100 Minus
CG11315-PB 393 CG11315-RB 309..393 101..17 425 100 Minus
CG11314-PA 480 CG11314-RA 198..290 299..207 315 93.5 Minus
CG11314-PA 480 CG11314-RA 391..478 106..19 265 92 Minus
CG11314-PA 480 CG11314-RA 307..344 190..153 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..504 491..17 2375 100 Minus
Npc2h-RA 812 CG11315-RA 30..504 491..17 2375 100 Minus
Npc2h-RB 731 CG11315-RB 30..338 491..183 1545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745787..30746261 17..491 2375 100 Plus
3R 32079331 3R 30744756..30745180 19..443 880 80.5 Plus
Blast to na_te.dros performed on 2015-02-12 17:38:40 has no hits.

BS13427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:43 Download gff for BS13427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:32 Download gff for BS13427.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 23..506 14..495 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:14 Download gff for BS13427.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 25..508 14..495 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:14 Download gff for BS13427.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30745783..30746266 14..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:32 Download gff for BS13427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571505..26571988 14..495 99   Plus

BS13427.complete Sequence

506 bp assembled on 2006-11-01

GenBank Submission: FJ637448

> BS13427.complete
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCTAGAAGCTTTCTA
GACCAT

BS13427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 474 CG11315-PC 1..474 17..490 2370 100 Plus
Npc2h-RA 474 CG11315-PA 1..474 17..490 2370 100 Plus
Npc2h-RB 393 CG11315-PB 1..308 17..324 1540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..504 16..490 2375 100 Plus
Npc2h-RA 812 CG11315-RA 30..504 16..490 2375 100 Plus
Npc2h-RB 731 CG11315-RB 30..338 16..324 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745787..30746261 490..16 2375 100 Minus
3R 32079331 3R 30744756..30745180 488..64 880 80.5 Minus
Blast to na_te.dros performed on 2014-11-27 06:45:57 has no hits.

BS13427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:10 Download gff for BS13427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11315-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:49 Download gff for BS13427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11315-RA 23..506 12..493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:20 Download gff for BS13427.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 34..502 22..490 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:11 Download gff for BS13427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11315-RA 23..506 12..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:44 Download gff for BS13427.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 36..504 22..490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:44 Download gff for BS13427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30745787..30746255 22..490 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:20 Download gff for BS13427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571509..26571977 22..490 100   Minus

BS13427.pep Sequence

Translation from 16 to 489

> BS13427.pep
MLRLSSLLPVAFALVLSSVSAEIVNFQTCEDSVDSCSISQVRVTPCPEAN
ANAACHIRRRHRFTMSFDFTPHFDADTLVASLGWAKSENVELPLLTMDQE
ACKYTTCPVRSGVTQTYTNNMPADARFPLSPYTIRWALKDPVSQKRCCFT
IDIKVVR*

BS13427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-PC 157 CG11315-PC 1..157 1..157 827 100 Plus
Npc2h-PA 157 CG11315-PA 1..157 1..157 827 100 Plus
Npc2g-PB 159 CG11314-PB 1..159 1..157 643 78 Plus
Npc2g-PA 159 CG11314-PA 1..159 1..157 643 78 Plus
Npc2h-PB 130 CG11315-PB 1..130 1..157 638 82.2 Plus