Clone BS13428 Report

Search the DGRC for BS13428

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG16885-RA
Protein status:BS13428.pep: full length peptide match
Sequenced Size:845

Clone Sequence Records

BS13428.5prime Sequence

463 bp (403 high quality bases) assembled on 2006-10-13

> BS13428.5prime
GAAGTTATCAGTCGACATGAAATCCATGCTCATTTTCGGCCTTGTGGCGA
TGTGCGTGCTGGTGGCCAACGCCAGTGAGGAGGCACCCAAGAAGGCCGTC
GAGACCGCCGAGCCCGCCGAGAAGAAGCAGGAGAAGCGCGGCATTGGCCA
CGGTCTGGGCTACGGATACGGACCATCGGCGGGAGGCGCCATTCTGGGAT
CCGGCATCGGTGTTGGAGTTCCAGTGGCTCCCGCTGTCGCTGAGCTGCCC
ACCCAGGTGCACACCAACACCGTGGTGAGGACCGTGCAGGTGCCCTACCA
GGTGGAGCGTCACGTTCCCTACCCCGTCGAGAAGACCGTCACCTATCCCG
TTAAGGTGCCCGTGCCCCAGCCCTACCCCGTGGAGAAGATCGTCCATGTG
CCCGTCAAGCAGATTGTGAAGGTGCCCGTCGAGGTGCCCCAGCCCTACCC
CGTCAAGAAGGTG

BS13428.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-PA 813 CG16885-RA 1..447 17..463 2185 99.5 Plus
CG16885-PB 471 CG16885-RB 1..445 17..461 2175 99.5 Plus
CG16884-PA 834 CG16884-RA 436..462 350..376 135 100 Plus
CG30101-PA 987 CG30101-RA 409..435 350..376 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-RA 1333 CG16885-RA 84..530 17..463 2205 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13933362..13933797 463..28 2150 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 07:10:43 has no hits.

BS13428.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:44 Download gff for BS13428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16885-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:41:26 Download gff for BS13428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 76..530 10..463 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:55 Download gff for BS13428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 76..530 10..463 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:55 Download gff for BS13428.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13933362..13933799 25..463 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:41:26 Download gff for BS13428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13933362..13933799 25..463 99   Minus

BS13428.complete Sequence

845 bp assembled on 2008-08-14

GenBank Submission: KX800529

> BS13428.complete
GAAGTTATCAGTCGACATGAAATCCATGCTCATTTTCGGCCTTGTGGCGA
TGTGCGTGCTGGTGGCCAACGCCAGTGAGGAGGCACCCAAGAAGGCCGTC
GAGACCGCCGAGCCCGCCGAGAAGAAGCAGGAGAAGCGCGGCATTGGCCA
CGGTCTGGGCTACGGATACGGACCATCGGCGGGAGGCGCCATTCTGGGAT
CCGGCATCGGTGTTGGAGTTCCAGTGGCTCCCGCTGTCGCTGAGCTGCCC
ACCCAGGTGCACACCAACACCGTGGTGAGGACCGTGCAGGTGCCCTACCA
GGTGGAGCGTCACGTTCCCTACCCCGTCGAGAAGACCGTCACCTATCCCG
TTAAGGTGCCCGTGCCCCAGCCCTACCCCGTGGAGAAGATCGTCCATGTG
CCCGTCAAGCAGATCGTGAAGGTGCCCGTCGAGGTGCCCCAGCCCTACCC
CGTCGAGAAGGTGATCCGTGTGCCCGTGAAGATCCCAGTTGATCGTCCCT
ACACCGTCCATGTCGACAAGCCATACCCCGTGCCCGTGGAGAAGCCCGTG
CCATACACCGTCGAGAAGCGTGTGATCCACAAGGTGCCCGTCCATGTGGA
GCGTCCAGTGCCCTACAAGGTGGCCGTGCCCGTGCCTGTCCACGTTGAGA
GCCACGTCAAGCCCGCCGTGGCCGTCACCCACACCGTTGCCGCTGCTCCT
GCCATCATCAGCCACGGCTACTCCGGACACGGAATCTCCGGATACGGAAT
TTCCGGACACGGAATCTCCTCCTACGGCAGCTCCTCCTACGGCGGCTCCG
CCCACGGTGGCTACCTCCACAAAAAGTAGAAGCTTTCTAGACCAT

BS13428.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-RA 813 CG16885-PA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-RA 1333 CG16885-RA 84..897 17..830 4070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13932995..13933797 830..28 4015 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:46:24 has no hits.

BS13428.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:46 Download gff for BS13428.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 75..903 10..837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:14 Download gff for BS13428.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 84..896 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:09 Download gff for BS13428.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 83..895 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:20 Download gff for BS13428.complete
Subject Subject Range Query Range Percent Splice Strand
CG16885-RA 84..896 17..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:20 Download gff for BS13428.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13932996..13933799 25..829 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:14 Download gff for BS13428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13932996..13933799 25..829 99   Minus

BS13428.pep Sequence

Translation from 16 to 828

> BS13428.pep
MKSMLIFGLVAMCVLVANASEEAPKKAVETAEPAEKKQEKRGIGHGLGYG
YGPSAGGAILGSGIGVGVPVAPAVAELPTQVHTNTVVRTVQVPYQVERHV
PYPVEKTVTYPVKVPVPQPYPVEKIVHVPVKQIVKVPVEVPQPYPVEKVI
RVPVKIPVDRPYTVHVDKPYPVPVEKPVPYTVEKRVIHKVPVHVERPVPY
KVAVPVPVHVESHVKPAVAVTHTVAAAPAIISHGYSGHGISGYGISGHGI
SSYGSSSYGGSAHGGYLHKK*

BS13428.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16885-PA 270 CG16885-PA 1..270 1..270 1420 100 Plus
CG16884-PA 277 CG16884-PA 7..272 9..238 382 41.8 Plus
CG30101-PA 328 CG30101-PA 3..198 4..215 334 39.2 Plus
CG16886-PB 358 CG16886-PB 138..301 72..220 327 48.2 Plus
CG16886-PA 373 CG16886-PA 138..301 72..220 327 48.2 Plus
CG16886-PB 358 CG16886-PB 38..284 22..230 320 40 Plus
CG30101-PA 328 CG30101-PA 131..328 90..243 278 40.4 Plus
CG30101-PA 328 CG30101-PA 85..263 64..224 268 41.7 Plus
CG16886-PB 358 CG16886-PB 159..323 77..214 268 42.4 Plus
CG16886-PB 358 CG16886-PB 177..326 77..201 212 42.2 Plus
CG16886-PB 358 CG16886-PB 233..349 92..213 160 37.9 Plus