Clone Sequence Records
BS13428.5prime Sequence
463 bp (403 high quality bases) assembled on 2006-10-13
> BS13428.5prime
GAAGTTATCAGTCGACATGAAATCCATGCTCATTTTCGGCCTTGTGGCGA
TGTGCGTGCTGGTGGCCAACGCCAGTGAGGAGGCACCCAAGAAGGCCGTC
GAGACCGCCGAGCCCGCCGAGAAGAAGCAGGAGAAGCGCGGCATTGGCCA
CGGTCTGGGCTACGGATACGGACCATCGGCGGGAGGCGCCATTCTGGGAT
CCGGCATCGGTGTTGGAGTTCCAGTGGCTCCCGCTGTCGCTGAGCTGCCC
ACCCAGGTGCACACCAACACCGTGGTGAGGACCGTGCAGGTGCCCTACCA
GGTGGAGCGTCACGTTCCCTACCCCGTCGAGAAGACCGTCACCTATCCCG
TTAAGGTGCCCGTGCCCCAGCCCTACCCCGTGGAGAAGATCGTCCATGTG
CCCGTCAAGCAGATTGTGAAGGTGCCCGTCGAGGTGCCCCAGCCCTACCC
CGTCAAGAAGGTG
BS13428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16885-PA | 813 | CG16885-RA | 1..447 | 17..463 | 2185 | 99.5 | Plus |
CG16885-PB | 471 | CG16885-RB | 1..445 | 17..461 | 2175 | 99.5 | Plus |
CG16884-PA | 834 | CG16884-RA | 436..462 | 350..376 | 135 | 100 | Plus |
CG30101-PA | 987 | CG30101-RA | 409..435 | 350..376 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16885-RA | 1333 | CG16885-RA | 84..530 | 17..463 | 2205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13933362..13933797 | 463..28 | 2150 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:10:43 has no hits.
BS13428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:44 Download gff for
BS13428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16885-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:41:26 Download gff for
BS13428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16885-RA | 76..530 | 10..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:55 Download gff for
BS13428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16885-RA | 76..530 | 10..463 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:55 Download gff for
BS13428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13933362..13933799 | 25..463 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:41:26 Download gff for
BS13428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13933362..13933799 | 25..463 | 99 | | Minus |
BS13428.complete Sequence
845 bp assembled on 2008-08-14
GenBank Submission: KX800529
> BS13428.complete
GAAGTTATCAGTCGACATGAAATCCATGCTCATTTTCGGCCTTGTGGCGA
TGTGCGTGCTGGTGGCCAACGCCAGTGAGGAGGCACCCAAGAAGGCCGTC
GAGACCGCCGAGCCCGCCGAGAAGAAGCAGGAGAAGCGCGGCATTGGCCA
CGGTCTGGGCTACGGATACGGACCATCGGCGGGAGGCGCCATTCTGGGAT
CCGGCATCGGTGTTGGAGTTCCAGTGGCTCCCGCTGTCGCTGAGCTGCCC
ACCCAGGTGCACACCAACACCGTGGTGAGGACCGTGCAGGTGCCCTACCA
GGTGGAGCGTCACGTTCCCTACCCCGTCGAGAAGACCGTCACCTATCCCG
TTAAGGTGCCCGTGCCCCAGCCCTACCCCGTGGAGAAGATCGTCCATGTG
CCCGTCAAGCAGATCGTGAAGGTGCCCGTCGAGGTGCCCCAGCCCTACCC
CGTCGAGAAGGTGATCCGTGTGCCCGTGAAGATCCCAGTTGATCGTCCCT
ACACCGTCCATGTCGACAAGCCATACCCCGTGCCCGTGGAGAAGCCCGTG
CCATACACCGTCGAGAAGCGTGTGATCCACAAGGTGCCCGTCCATGTGGA
GCGTCCAGTGCCCTACAAGGTGGCCGTGCCCGTGCCTGTCCACGTTGAGA
GCCACGTCAAGCCCGCCGTGGCCGTCACCCACACCGTTGCCGCTGCTCCT
GCCATCATCAGCCACGGCTACTCCGGACACGGAATCTCCGGATACGGAAT
TTCCGGACACGGAATCTCCTCCTACGGCAGCTCCTCCTACGGCGGCTCCG
CCCACGGTGGCTACCTCCACAAAAAGTAGAAGCTTTCTAGACCAT
BS13428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16885-RA | 813 | CG16885-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16885-RA | 1333 | CG16885-RA | 84..897 | 17..830 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13932995..13933797 | 830..28 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:46:24 has no hits.
BS13428.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:46 Download gff for
BS13428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16885-RA | 75..903 | 10..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:14 Download gff for
BS13428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16885-RA | 84..896 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:09 Download gff for
BS13428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16885-RA | 83..895 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:20 Download gff for
BS13428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16885-RA | 84..896 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:20 Download gff for
BS13428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13932996..13933799 | 25..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:14 Download gff for
BS13428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13932996..13933799 | 25..829 | 99 | | Minus |
BS13428.pep Sequence
Translation from 16 to 828
> BS13428.pep
MKSMLIFGLVAMCVLVANASEEAPKKAVETAEPAEKKQEKRGIGHGLGYG
YGPSAGGAILGSGIGVGVPVAPAVAELPTQVHTNTVVRTVQVPYQVERHV
PYPVEKTVTYPVKVPVPQPYPVEKIVHVPVKQIVKVPVEVPQPYPVEKVI
RVPVKIPVDRPYTVHVDKPYPVPVEKPVPYTVEKRVIHKVPVHVERPVPY
KVAVPVPVHVESHVKPAVAVTHTVAAAPAIISHGYSGHGISGYGISGHGI
SSYGSSSYGGSAHGGYLHKK*
BS13428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16885-PA | 270 | CG16885-PA | 1..270 | 1..270 | 1420 | 100 | Plus |
CG16884-PA | 277 | CG16884-PA | 7..272 | 9..238 | 382 | 41.8 | Plus |
CG30101-PA | 328 | CG30101-PA | 3..198 | 4..215 | 334 | 39.2 | Plus |
CG16886-PB | 358 | CG16886-PB | 138..301 | 72..220 | 327 | 48.2 | Plus |
CG16886-PA | 373 | CG16886-PA | 138..301 | 72..220 | 327 | 48.2 | Plus |
CG16886-PB | 358 | CG16886-PB | 38..284 | 22..230 | 320 | 40 | Plus |
CG30101-PA | 328 | CG30101-PA | 131..328 | 90..243 | 278 | 40.4 | Plus |
CG30101-PA | 328 | CG30101-PA | 85..263 | 64..224 | 268 | 41.7 | Plus |
CG16886-PB | 358 | CG16886-PB | 159..323 | 77..214 | 268 | 42.4 | Plus |
CG16886-PB | 358 | CG16886-PB | 177..326 | 77..201 | 212 | 42.2 | Plus |
CG16886-PB | 358 | CG16886-PB | 233..349 | 92..213 | 160 | 37.9 | Plus |