Clone Sequence Records
BS13432.3prime Sequence
597 bp (556 high quality bases) assembled on 2006-10-13
> BS13432.3prime
ATGGTCTAGAAAGCTTCTAAAAAGTCTTTCTGTGCACGGCTTTCTGTCCC
TCCTCCTCGTATTCCCGCTTCGAGATCCACATCTTCTTGAAAGTATCGAG
CGAGGCTAAAATCGATCCGCCCATCCATGTGGAGTACAGACGTTCCTGCG
GCGCAGCGATCCTGATCTTGAGATCCTTAGCCGAGTGTTTCTTCAGTTCG
GACAACAGACGGTCGCCGAATCCTTTGAAGAGCGTTGATCCGCCGGACAG
CACGATGTTCTGGTAGAGCATTTTCCTGAGATCCATATCTGACTTCTCGA
TGGAGTACATCAGAACGTCGTGAATGCCCTCACATTCCTCGCCCAGCAGA
TCGGGCCGGAAGAGCACCTCCGGCGCCCTGAAGCGTGCAGGTCCAATCTC
AAAGATCTTGCCGTCGGGCAGCTTGTAGGCAAACTTCTCGGTTTCCACGG
TCTCCTCCTTCTGCGGATTGGTGGCCAGATAGCAGACCTTCTCCTTGATG
GAGCGCACAATCTCAAATTCGGCAGTCGACCGGAAGTTAAAGCCCTCCCG
GCGGATGAATGTCTTCAGGTAGCGCGTCACATCGCGCCCGGCGATGT
BS13432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6174-PA | 1131 | Arp87C-RA | 551..1131 | 597..17 | 2880 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1469 | CG6174-RA | 630..1210 | 597..17 | 2890 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12693325..12693761 | 597..161 | 2170 | 99.8 | Minus |
3R | 32079331 | 3R | 12693829..12693973 | 161..17 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:19:05 has no hits.
BS13432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:44 Download gff for
BS13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6174-PA | 551..1131 | 17..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:40 Download gff for
BS13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 630..1213 | 12..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:47 Download gff for
BS13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 630..1213 | 12..597 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:47 Download gff for
BS13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12693325..12693761 | 161..597 | 99 | -> | Minus |
3R | 12693830..12693976 | 12..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:40 Download gff for
BS13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8519047..8519483 | 161..597 | 99 | -> | Minus |
arm_3R | 8519552..8519698 | 12..160 | 97 | | Minus |
BS13432.5prime Sequence
632 bp (527 high quality bases) assembled on 2006-10-13
> BS13432.5prime
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
AACACTCATCCGCCGGGAGGGCTTTAACTTCC
BS13432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6174-PA | 1131 | Arp87C-RA | 1..616 | 17..632 | 3055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1469 | CG6174-RA | 80..695 | 17..632 | 3065 | 99.8 | Plus |
CG31347-RA | 865 | CG31347-RA | 728..776 | 65..17 | 245 | 100 | Minus |
Act87E-RC | 1853 | CG18290-RC | 379..652 | 326..599 | 190 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12692770..12692945 | 130..305 | 880 | 100 | Plus |
3R | 32079331 | 3R | 12693215..12693390 | 457..632 | 865 | 99.4 | Plus |
3R | 32079331 | 3R | 12693004..12693155 | 305..456 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12692643..12692707 | 65..129 | 325 | 100 | Plus |
3R | 32079331 | 3R | 12691822..12691870 | 17..65 | 245 | 100 | Plus |
3R | 32079331 | 3R | 13426901..13427174 | 326..599 | 185 | 71.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:10:02 has no hits.
BS13432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:45 Download gff for
BS13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6174-PA | 1..616 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:42 Download gff for
BS13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 74..695 | 9..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:37 Download gff for
BS13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 74..695 | 9..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:37 Download gff for
BS13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12691816..12691869 | 9..64 | 92 | -> | Plus |
3R | 12692643..12692707 | 65..129 | 100 | -> | Plus |
3R | 12692770..12692944 | 130..304 | 100 | -> | Plus |
3R | 12693004..12693155 | 305..456 | 100 | -> | Plus |
3R | 12693215..12693390 | 457..632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:42 Download gff for
BS13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8517538..8517591 | 9..64 | 92 | -> | Plus |
arm_3R | 8518365..8518429 | 65..129 | 100 | -> | Plus |
arm_3R | 8518492..8518666 | 130..304 | 100 | -> | Plus |
arm_3R | 8518726..8518877 | 305..456 | 100 | -> | Plus |
arm_3R | 8518937..8519112 | 457..632 | 99 | | Plus |
BS13432.complete Sequence
1163 bp assembled on 2008-08-14
GenBank Submission: KX800608
> BS13432.complete
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
GACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTG
AGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCG
CAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGA
CGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGC
TCTTCCGGCCCGATCTGCTGGGCGAGGAATGTGAGGGCATTCACGACGTT
CTGATGTACTCCATCGAGAAGTCAGATATGGATCTCAGGAAAATGCTCTA
CCAGAACATCGTGCTGTCCGGCGGATCAACGCTCTTCAAAGGATTCGGCG
ACCGTCTGTTGTCCGAACTGAAGAAACACTCGGCTAAGGATCTCAAGATC
AGGATCGCTGCGCCGCAGGAACGTCTGTACTCCACATGGATGGGCGGATC
GATTTTAGCCTCGCTCGATACTTTCAAGAAGATGTGGATCTCGAAGCGGG
AATACGAGGAGGAGGGACAGAAAGCCGTGCACAGAAAGACTTTTTAGAAG
CTTTCTAGACCAT
BS13432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1131 | CG6174-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Act87E-RC | 1131 | CG18290-PC | 298..571 | 326..599 | 185 | 71.2 | Plus |
Act87E-RB | 1131 | CG18290-PB | 298..571 | 326..599 | 185 | 71.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1469 | CG6174-RA | 80..1210 | 17..1147 | 5655 | 100 | Plus |
CG31347-RA | 865 | CG31347-RA | 728..776 | 65..17 | 245 | 100 | Minus |
Act87E-RC | 1853 | CG18290-RC | 379..652 | 326..599 | 185 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12693215..12693761 | 457..1003 | 2735 | 100 | Plus |
3R | 32079331 | 3R | 12692770..12692945 | 130..305 | 880 | 100 | Plus |
3R | 32079331 | 3R | 12693004..12693155 | 305..456 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12693829..12693973 | 1003..1147 | 725 | 100 | Plus |
3R | 32079331 | 3R | 12692643..12692707 | 65..129 | 325 | 100 | Plus |
3R | 32079331 | 3R | 12691822..12691870 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:22:19 has no hits.
BS13432.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:35 Download gff for
BS13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp87C-RA | 81..1220 | 9..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:13 Download gff for
BS13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 80..1210 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:44 Download gff for
BS13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp87C-RA | 87..1217 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:54 Download gff for
BS13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 80..1210 | 17..1147 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:54 Download gff for
BS13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12691822..12691869 | 17..64 | 100 | -> | Plus |
3R | 12692643..12692707 | 65..129 | 100 | -> | Plus |
3R | 12692770..12692944 | 130..304 | 100 | -> | Plus |
3R | 12693004..12693155 | 305..456 | 100 | -> | Plus |
3R | 12693215..12693761 | 457..1003 | 100 | -> | Plus |
3R | 12693830..12693973 | 1004..1147 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:13 Download gff for
BS13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8517544..8517591 | 17..64 | 100 | -> | Plus |
arm_3R | 8518365..8518429 | 65..129 | 100 | -> | Plus |
arm_3R | 8518492..8518666 | 130..304 | 100 | -> | Plus |
arm_3R | 8518726..8518877 | 305..456 | 100 | -> | Plus |
arm_3R | 8518937..8519483 | 457..1003 | 100 | -> | Plus |
arm_3R | 8519552..8519695 | 1004..1147 | 100 | | Plus |
BS13432.pep Sequence
Translation from 16 to 1146
> BS13432.pep
MEPYDVVVNQPVVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAG
ALEGDIFVGPKAEEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLA
TFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYAT
GRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRR
EGFNFRSTAEFEIVRSIKEKVCYLATNPQKEETVETEKFAYKLPDGKIFE
IGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVL
SGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASL
DTFKKMWISKREYEEEGQKAVHRKTF*
BS13432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-PA | 376 | CG6174-PA | 1..376 | 1..376 | 1961 | 100 | Plus |
Act87E-PC | 376 | CG18290-PC | 9..376 | 12..376 | 1084 | 54.6 | Plus |
Act87E-PB | 376 | CG18290-PB | 9..376 | 12..376 | 1084 | 54.6 | Plus |
Act87E-PA | 376 | CG18290-PA | 9..376 | 12..376 | 1084 | 54.6 | Plus |
Act88F-PA | 376 | CG5178-PA | 9..376 | 12..376 | 1083 | 54.9 | Plus |