Clone BS13432 Report

Search the DGRC for BS13432

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptArp1-RA
Protein status:BS13432.pep: full length peptide match
Sequenced Size:1163

Clone Sequence Records

BS13432.3prime Sequence

597 bp (556 high quality bases) assembled on 2006-10-13

> BS13432.3prime
ATGGTCTAGAAAGCTTCTAAAAAGTCTTTCTGTGCACGGCTTTCTGTCCC
TCCTCCTCGTATTCCCGCTTCGAGATCCACATCTTCTTGAAAGTATCGAG
CGAGGCTAAAATCGATCCGCCCATCCATGTGGAGTACAGACGTTCCTGCG
GCGCAGCGATCCTGATCTTGAGATCCTTAGCCGAGTGTTTCTTCAGTTCG
GACAACAGACGGTCGCCGAATCCTTTGAAGAGCGTTGATCCGCCGGACAG
CACGATGTTCTGGTAGAGCATTTTCCTGAGATCCATATCTGACTTCTCGA
TGGAGTACATCAGAACGTCGTGAATGCCCTCACATTCCTCGCCCAGCAGA
TCGGGCCGGAAGAGCACCTCCGGCGCCCTGAAGCGTGCAGGTCCAATCTC
AAAGATCTTGCCGTCGGGCAGCTTGTAGGCAAACTTCTCGGTTTCCACGG
TCTCCTCCTTCTGCGGATTGGTGGCCAGATAGCAGACCTTCTCCTTGATG
GAGCGCACAATCTCAAATTCGGCAGTCGACCGGAAGTTAAAGCCCTCCCG
GCGGATGAATGTCTTCAGGTAGCGCGTCACATCGCGCCCGGCGATGT

BS13432.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6174-PA 1131 Arp87C-RA 551..1131 597..17 2880 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1469 CG6174-RA 630..1210 597..17 2890 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12693325..12693761 597..161 2170 99.8 Minus
3R 32079331 3R 12693829..12693973 161..17 725 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:19:05 has no hits.

BS13432.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:44 Download gff for BS13432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6174-PA 551..1131 17..597 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:40 Download gff for BS13432.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 630..1213 12..597 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:47 Download gff for BS13432.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 630..1213 12..597 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:47 Download gff for BS13432.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12693325..12693761 161..597 99 -> Minus
3R 12693830..12693976 12..160 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:40 Download gff for BS13432.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8519047..8519483 161..597 99 -> Minus
arm_3R 8519552..8519698 12..160 97   Minus

BS13432.5prime Sequence

632 bp (527 high quality bases) assembled on 2006-10-13

> BS13432.5prime
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
AACACTCATCCGCCGGGAGGGCTTTAACTTCC

BS13432.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6174-PA 1131 Arp87C-RA 1..616 17..632 3055 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1469 CG6174-RA 80..695 17..632 3065 99.8 Plus
CG31347-RA 865 CG31347-RA 728..776 65..17 245 100 Minus
Act87E-RC 1853 CG18290-RC 379..652 326..599 190 72.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12692770..12692945 130..305 880 100 Plus
3R 32079331 3R 12693215..12693390 457..632 865 99.4 Plus
3R 32079331 3R 12693004..12693155 305..456 760 100 Plus
3R 32079331 3R 12692643..12692707 65..129 325 100 Plus
3R 32079331 3R 12691822..12691870 17..65 245 100 Plus
3R 32079331 3R 13426901..13427174 326..599 185 71.2 Plus
Blast to na_te.dros performed on 2015-02-12 07:10:02 has no hits.

BS13432.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:45 Download gff for BS13432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6174-PA 1..616 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:42 Download gff for BS13432.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 74..695 9..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:37 Download gff for BS13432.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 74..695 9..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:37 Download gff for BS13432.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12691816..12691869 9..64 92 -> Plus
3R 12692643..12692707 65..129 100 -> Plus
3R 12692770..12692944 130..304 100 -> Plus
3R 12693004..12693155 305..456 100 -> Plus
3R 12693215..12693390 457..632 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:42 Download gff for BS13432.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8517538..8517591 9..64 92 -> Plus
arm_3R 8518365..8518429 65..129 100 -> Plus
arm_3R 8518492..8518666 130..304 100 -> Plus
arm_3R 8518726..8518877 305..456 100 -> Plus
arm_3R 8518937..8519112 457..632 99   Plus

BS13432.complete Sequence

1163 bp assembled on 2008-08-14

GenBank Submission: KX800608

> BS13432.complete
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
GACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTG
AGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCG
CAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGA
CGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGC
TCTTCCGGCCCGATCTGCTGGGCGAGGAATGTGAGGGCATTCACGACGTT
CTGATGTACTCCATCGAGAAGTCAGATATGGATCTCAGGAAAATGCTCTA
CCAGAACATCGTGCTGTCCGGCGGATCAACGCTCTTCAAAGGATTCGGCG
ACCGTCTGTTGTCCGAACTGAAGAAACACTCGGCTAAGGATCTCAAGATC
AGGATCGCTGCGCCGCAGGAACGTCTGTACTCCACATGGATGGGCGGATC
GATTTTAGCCTCGCTCGATACTTTCAAGAAGATGTGGATCTCGAAGCGGG
AATACGAGGAGGAGGGACAGAAAGCCGTGCACAGAAAGACTTTTTAGAAG
CTTTCTAGACCAT

BS13432.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1131 CG6174-PA 1..1131 17..1147 5655 100 Plus
Act87E-RC 1131 CG18290-PC 298..571 326..599 185 71.2 Plus
Act87E-RB 1131 CG18290-PB 298..571 326..599 185 71.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1469 CG6174-RA 80..1210 17..1147 5655 100 Plus
CG31347-RA 865 CG31347-RA 728..776 65..17 245 100 Minus
Act87E-RC 1853 CG18290-RC 379..652 326..599 185 71.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12693215..12693761 457..1003 2735 100 Plus
3R 32079331 3R 12692770..12692945 130..305 880 100 Plus
3R 32079331 3R 12693004..12693155 305..456 760 100 Plus
3R 32079331 3R 12693829..12693973 1003..1147 725 100 Plus
3R 32079331 3R 12692643..12692707 65..129 325 100 Plus
3R 32079331 3R 12691822..12691870 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:22:19 has no hits.

BS13432.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:35 Download gff for BS13432.complete
Subject Subject Range Query Range Percent Splice Strand
Arp87C-RA 81..1220 9..1152 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:13 Download gff for BS13432.complete
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 80..1210 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:44 Download gff for BS13432.complete
Subject Subject Range Query Range Percent Splice Strand
Arp87C-RA 87..1217 17..1147 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:54 Download gff for BS13432.complete
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 80..1210 17..1147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:54 Download gff for BS13432.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12691822..12691869 17..64 100 -> Plus
3R 12692643..12692707 65..129 100 -> Plus
3R 12692770..12692944 130..304 100 -> Plus
3R 12693004..12693155 305..456 100 -> Plus
3R 12693215..12693761 457..1003 100 -> Plus
3R 12693830..12693973 1004..1147 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:13 Download gff for BS13432.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8517544..8517591 17..64 100 -> Plus
arm_3R 8518365..8518429 65..129 100 -> Plus
arm_3R 8518492..8518666 130..304 100 -> Plus
arm_3R 8518726..8518877 305..456 100 -> Plus
arm_3R 8518937..8519483 457..1003 100 -> Plus
arm_3R 8519552..8519695 1004..1147 100   Plus

BS13432.pep Sequence

Translation from 16 to 1146

> BS13432.pep
MEPYDVVVNQPVVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAG
ALEGDIFVGPKAEEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLA
TFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYAT
GRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRR
EGFNFRSTAEFEIVRSIKEKVCYLATNPQKEETVETEKFAYKLPDGKIFE
IGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVL
SGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASL
DTFKKMWISKREYEEEGQKAVHRKTF*

BS13432.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-PA 376 CG6174-PA 1..376 1..376 1961 100 Plus
Act87E-PC 376 CG18290-PC 9..376 12..376 1084 54.6 Plus
Act87E-PB 376 CG18290-PB 9..376 12..376 1084 54.6 Plus
Act87E-PA 376 CG18290-PA 9..376 12..376 1084 54.6 Plus
Act88F-PA 376 CG5178-PA 9..376 12..376 1083 54.9 Plus