Clone BS13434 Report

Search the DGRC for BS13434

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptse-RA
Protein status:BS13434.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13434.3prime Sequence

662 bp (626 high quality bases) assembled on 2006-10-13

> BS13434.3prime
ATGGTCTAGAAAGCTTTCAGGCATCCTTGACCAGCAGATTGTAATTGGGT
CGACCCAGGCTCCGTGTACGCAGGAACTCCGCCTGAACCTCGGCCTCCAT
GTAGAAGGCCATCACAGCCGGATCTCGTTTCATGCGTTCCAGCCAAAGGG
TCAGCTGGGGGAAGCGACTCTGATCGTAGTTATAATCCTCTCCACGCTGC
AACTTAAGGAGCTCGAGGCGCTCACACCAGGGCCAAATCATATAGTCCAG
AATGCCCGTCTGCTCGCCACCAAAGAATTCCGTACCACGTCGAGCCAGCT
CCCTTTCGTAGATGTCCAGGCCGCTCCAGAAGGGCTCCAGATCACCGCCA
TCGGATGCCTTGAAGAAGGCACCTAACACCGCTCTAAATCGCTCGATTAG
TAACTTGTCCTGCACTTTCTTCAGCGGATCACGTGGATAGAGTGGTCGCA
ATGGATACTGCTCGTCCAGATATTCACAAATCAGTAGCGACTCTGTGAGC
ACAGGTGGTCCAGGTTCTCGCACGATTTCTAGAGCCGGCACCTTGCCCTG
TGGATTCTTCTCCAGCAGCCACTCCGGCTTGTCTGTGAGATTAATGTAAA
TGCTGTGATACGGGATCTGCTTGGCGTCCAGGACCAGATGCACCCGTTGG
GGCAATGGGCAG

BS13434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6781-PA 732 CG6781-RA 87..732 662..17 3155 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 825 CG6781-RA 125..770 662..17 3185 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8520732..8521242 662..152 2510 99.4 Minus
3L 28110227 3L 8521299..8521434 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:38:52 has no hits.

BS13434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:45 Download gff for BS13434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6781-PA 87..732 17..662 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:36 Download gff for BS13434.3prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 125..773 13..662 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:01 Download gff for BS13434.3prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 125..773 13..662 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:01 Download gff for BS13434.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8520732..8521242 152..662 99 -> Minus
3L 8521300..8521437 13..151 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:36 Download gff for BS13434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8513832..8514342 152..662 99 -> Minus
arm_3L 8514400..8514537 13..151 98   Minus

BS13434.5prime Sequence

651 bp (638 high quality bases) assembled on 2006-10-13

> BS13434.5prime
GAAGTTATCAGTCGACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAACGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAAACTACGATCAGAGTC
CCTTTCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCT
G

BS13434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6781-PA 732 CG6781-RA 1..569 17..585 2820 99.8 Plus
CG6781-PA 732 CG6781-RA 568..634 585..651 285 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 825 CG6781-RA 38..672 16..651 3110 99.4 Plus
GstO3-RA 881 CG6776-RA 85..257 32..204 280 78.2 Plus
GstO1-RA 954 CG6662-RA 134..244 86..196 195 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8520672..8521242 43..614 2765 99.3 Plus
3L 28110227 3L 8519538..8519671 71..204 250 79.1 Plus
3L 28110227 3L 8524566..8524676 196..86 195 78.4 Minus
3L 28110227 3L 8521299..8521336 614..651 190 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:38:45 has no hits.

BS13434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:46 Download gff for BS13434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6781-PA 1..634 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:33 Download gff for BS13434.5prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..672 9..651 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:48 Download gff for BS13434.5prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..672 9..651 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:48 Download gff for BS13434.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8520674..8521242 45..614 99 -> Plus
3L 8521300..8521336 615..651 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:33 Download gff for BS13434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8513774..8514342 45..614 99 -> Plus
arm_3L 8514400..8514436 615..651 100   Plus

BS13434.complete Sequence

764 bp assembled on 2006-11-01

GenBank Submission: FJ637449

> BS13434.complete
GAAGTTATCAGTCGACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAGCGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAACTACGATCAGAGTCG
CTTCCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCTG
TGATGGCCTTCTACATGGAGGCCGAGGTTCAGGCGGAGTTCCTGCGTACA
CGGAGCCTGGGTCGACCCAATTACAATCTGCTGGTCAAGGATGCCTGAAA
GCTTTCTAGACCAT

BS13434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 732 CG6781-PA 1..732 17..748 3660 100 Plus
GstO3-RA 726 CG6776-PA 16..188 32..204 280 77.5 Plus
GstO1-RA 765 CG6662-PA 70..180 86..196 195 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 825 CG6781-RA 38..770 16..748 3665 100 Plus
GstO3-RA 881 CG6776-RA 85..257 32..204 280 77.5 Plus
GstO1-RA 954 CG6662-RA 134..244 86..196 195 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8520672..8521242 43..613 2855 100 Plus
3L 28110227 3L 8521299..8521434 613..748 680 100 Plus
3L 28110227 3L 8519538..8519671 71..204 250 79.1 Plus
3L 28110227 3L 8524566..8524676 196..86 195 78.4 Minus
Blast to na_te.dros performed on 2014-11-26 22:01:47 has no hits.

BS13434.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:12 Download gff for BS13434.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:51 Download gff for BS13434.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 9..752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:19 Download gff for BS13434.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 39..769 17..747 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:12 Download gff for BS13434.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 9..752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:05 Download gff for BS13434.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 39..769 17..747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:05 Download gff for BS13434.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8520590..8520617 17..44 100 -> Plus
3L 8520674..8521242 45..613 100 -> Plus
3L 8521300..8521433 614..747 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:19 Download gff for BS13434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8513690..8513717 17..44 100 -> Plus
arm_3L 8513774..8514342 45..613 100 -> Plus
arm_3L 8514400..8514533 614..747 100   Plus

BS13434.pep Sequence

Translation from 16 to 747

> BS13434.pep
MSNGRHLAKGSPMPDVPEDGILRLYSMRFCPFAQRVHLVLDAKQIPYHSI
YINLTDKPEWLLEKNPQGKVPALEIVREPGPPVLTESLLICEYLDEQYPL
RPLYPRDPLKKVQDKLLIERFRAVLGAFFKASDGGDLEPFWSGLDIYERE
LARRGTEFFGGEQTGILDYMIWPWCERLELLKLQRGEDYNYDQSRFPQLT
LWLERMKRDPAVMAFYMEAEVQAEFLRTRSLGRPNYNLLVKDA*

BS13434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
se-PA 243 CG6781-PA 1..243 1..243 1300 100 Plus
GstO3-PA 241 CG6776-PA 1..240 1..239 775 57.1 Plus
GstO1-PA 254 CG6662-PA 1..248 1..243 692 52.8 Plus
GstO2-PB 250 CG6673-PB 6..245 5..238 620 46.7 Plus
GstO2-PA 251 CG6673-PA 6..248 5..241 575 43.6 Plus