Clone Sequence Records
BS13434.3prime Sequence
662 bp (626 high quality bases) assembled on 2006-10-13
> BS13434.3prime
ATGGTCTAGAAAGCTTTCAGGCATCCTTGACCAGCAGATTGTAATTGGGT
CGACCCAGGCTCCGTGTACGCAGGAACTCCGCCTGAACCTCGGCCTCCAT
GTAGAAGGCCATCACAGCCGGATCTCGTTTCATGCGTTCCAGCCAAAGGG
TCAGCTGGGGGAAGCGACTCTGATCGTAGTTATAATCCTCTCCACGCTGC
AACTTAAGGAGCTCGAGGCGCTCACACCAGGGCCAAATCATATAGTCCAG
AATGCCCGTCTGCTCGCCACCAAAGAATTCCGTACCACGTCGAGCCAGCT
CCCTTTCGTAGATGTCCAGGCCGCTCCAGAAGGGCTCCAGATCACCGCCA
TCGGATGCCTTGAAGAAGGCACCTAACACCGCTCTAAATCGCTCGATTAG
TAACTTGTCCTGCACTTTCTTCAGCGGATCACGTGGATAGAGTGGTCGCA
ATGGATACTGCTCGTCCAGATATTCACAAATCAGTAGCGACTCTGTGAGC
ACAGGTGGTCCAGGTTCTCGCACGATTTCTAGAGCCGGCACCTTGCCCTG
TGGATTCTTCTCCAGCAGCCACTCCGGCTTGTCTGTGAGATTAATGTAAA
TGCTGTGATACGGGATCTGCTTGGCGTCCAGGACCAGATGCACCCGTTGG
GGCAATGGGCAG
BS13434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6781-PA | 732 | CG6781-RA | 87..732 | 662..17 | 3155 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 825 | CG6781-RA | 125..770 | 662..17 | 3185 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8520732..8521242 | 662..152 | 2510 | 99.4 | Minus |
3L | 28110227 | 3L | 8521299..8521434 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:38:52 has no hits.
BS13434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:45 Download gff for
BS13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6781-PA | 87..732 | 17..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:36 Download gff for
BS13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 125..773 | 13..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:01 Download gff for
BS13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 125..773 | 13..662 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:01 Download gff for
BS13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8520732..8521242 | 152..662 | 99 | -> | Minus |
3L | 8521300..8521437 | 13..151 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:36 Download gff for
BS13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8513832..8514342 | 152..662 | 99 | -> | Minus |
arm_3L | 8514400..8514537 | 13..151 | 98 | | Minus |
BS13434.5prime Sequence
651 bp (638 high quality bases) assembled on 2006-10-13
> BS13434.5prime
GAAGTTATCAGTCGACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAACGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAAACTACGATCAGAGTC
CCTTTCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCT
G
BS13434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6781-PA | 732 | CG6781-RA | 1..569 | 17..585 | 2820 | 99.8 | Plus |
CG6781-PA | 732 | CG6781-RA | 568..634 | 585..651 | 285 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 825 | CG6781-RA | 38..672 | 16..651 | 3110 | 99.4 | Plus |
GstO3-RA | 881 | CG6776-RA | 85..257 | 32..204 | 280 | 78.2 | Plus |
GstO1-RA | 954 | CG6662-RA | 134..244 | 86..196 | 195 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8520672..8521242 | 43..614 | 2765 | 99.3 | Plus |
3L | 28110227 | 3L | 8519538..8519671 | 71..204 | 250 | 79.1 | Plus |
3L | 28110227 | 3L | 8524566..8524676 | 196..86 | 195 | 78.4 | Minus |
3L | 28110227 | 3L | 8521299..8521336 | 614..651 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:38:45 has no hits.
BS13434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:46 Download gff for
BS13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6781-PA | 1..634 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:33 Download gff for
BS13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..672 | 9..651 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:48 Download gff for
BS13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..672 | 9..651 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:48 Download gff for
BS13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8520674..8521242 | 45..614 | 99 | -> | Plus |
3L | 8521300..8521336 | 615..651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:33 Download gff for
BS13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8513774..8514342 | 45..614 | 99 | -> | Plus |
arm_3L | 8514400..8514436 | 615..651 | 100 | | Plus |
BS13434.complete Sequence
764 bp assembled on 2006-11-01
GenBank Submission: FJ637449
> BS13434.complete
GAAGTTATCAGTCGACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAGCGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAACTACGATCAGAGTCG
CTTCCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCTG
TGATGGCCTTCTACATGGAGGCCGAGGTTCAGGCGGAGTTCCTGCGTACA
CGGAGCCTGGGTCGACCCAATTACAATCTGCTGGTCAAGGATGCCTGAAA
GCTTTCTAGACCAT
BS13434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 732 | CG6781-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
GstO3-RA | 726 | CG6776-PA | 16..188 | 32..204 | 280 | 77.5 | Plus |
GstO1-RA | 765 | CG6662-PA | 70..180 | 86..196 | 195 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 825 | CG6781-RA | 38..770 | 16..748 | 3665 | 100 | Plus |
GstO3-RA | 881 | CG6776-RA | 85..257 | 32..204 | 280 | 77.5 | Plus |
GstO1-RA | 954 | CG6662-RA | 134..244 | 86..196 | 195 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8520672..8521242 | 43..613 | 2855 | 100 | Plus |
3L | 28110227 | 3L | 8521299..8521434 | 613..748 | 680 | 100 | Plus |
3L | 28110227 | 3L | 8519538..8519671 | 71..204 | 250 | 79.1 | Plus |
3L | 28110227 | 3L | 8524566..8524676 | 196..86 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:01:47 has no hits.
BS13434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:12 Download gff for
BS13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:51 Download gff for
BS13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:19 Download gff for
BS13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 39..769 | 17..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:12 Download gff for
BS13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:05 Download gff for
BS13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 39..769 | 17..747 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:05 Download gff for
BS13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8520590..8520617 | 17..44 | 100 | -> | Plus |
3L | 8520674..8521242 | 45..613 | 100 | -> | Plus |
3L | 8521300..8521433 | 614..747 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:19 Download gff for
BS13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8513690..8513717 | 17..44 | 100 | -> | Plus |
arm_3L | 8513774..8514342 | 45..613 | 100 | -> | Plus |
arm_3L | 8514400..8514533 | 614..747 | 100 | | Plus |
BS13434.pep Sequence
Translation from 16 to 747
> BS13434.pep
MSNGRHLAKGSPMPDVPEDGILRLYSMRFCPFAQRVHLVLDAKQIPYHSI
YINLTDKPEWLLEKNPQGKVPALEIVREPGPPVLTESLLICEYLDEQYPL
RPLYPRDPLKKVQDKLLIERFRAVLGAFFKASDGGDLEPFWSGLDIYERE
LARRGTEFFGGEQTGILDYMIWPWCERLELLKLQRGEDYNYDQSRFPQLT
LWLERMKRDPAVMAFYMEAEVQAEFLRTRSLGRPNYNLLVKDA*
BS13434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-PA | 243 | CG6781-PA | 1..243 | 1..243 | 1300 | 100 | Plus |
GstO3-PA | 241 | CG6776-PA | 1..240 | 1..239 | 775 | 57.1 | Plus |
GstO1-PA | 254 | CG6662-PA | 1..248 | 1..243 | 692 | 52.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..245 | 5..238 | 620 | 46.7 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..248 | 5..241 | 575 | 43.6 | Plus |