Clone BS13435 Report

Search the DGRC for BS13435

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptGnmt-RA
Protein status:BS13435.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13435.3prime Sequence

716 bp (675 high quality bases) assembled on 2006-10-13

> BS13435.3prime
ATGGTCTAGAAAGCTTCTAAACCTGTGGCTTTTCGATCAGGTGAATGTAG
AAGGCGGGGTTCTTCACCTGGCTCATCTCCTTGAAGTCACCATACAACTG
GTGCTTGGCTTTGGCGGAGAAGATCTCGGCTAGAATCTCCTGGAATCGTT
TCAGCCCGTGGGGATAGTAGGACAGACGGAACTCACTGGTCAACTTGTTG
CCAGCGATCAGGTAGTCCATCGACACCAGGGCGGGCTTACCGCAGTAGAA
GAGCACGGATGTCTTGATGTCCGCCGTGTGACTCGTATTATAGTAGATGC
TCTTGGCAGGCGTAGCTCCCGTTTCCAGGATATTGTCGTAGTTGCGATGA
TCGATAAGCAGGACGCCTCCAGGCTTGAGGCACTTTTCGAAGTTGCCAAT
AGCCTGCTTGTGCTCCCGCTGATCCCCGAACCCGTCCATCAAGTGGGCAA
AGGAGTTGCCCAAGCAAATGACGGCATCGAAACCATCCTGAATGTGCTCC
TGAATGTCGTCGTACAGTGTCAACCAGTTGGCTTCCTCAATGACCCACTT
ATCGAAGGCAGCTTCATTTCGCCGGGCCCAGCGCTCCTTGAGGGCGTACT
TCAACATCTTATCAGAGGCATCTACGGACACAACTTCGAAGCCCTCCTCC
ACAAGCATCAGGGAGTCCACACCCGTTCCACAGGGCCCGTCTAGGACACG
CTTGCCTCCCTTATTG

BS13435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6188-PA 870 CG6188-RA 171..870 716..17 3425 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 990 CG6188-RA 212..912 716..16 3460 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12675736..12676006 286..16 1355 100 Minus
3R 32079331 3R 12675186..12675443 544..287 1290 100 Minus
3R 32079331 3R 12674998..12675126 672..544 645 100 Minus
3R 32079331 3R 12674819..12674863 716..672 180 93.3 Minus
Blast to na_te.dros performed on 2015-01-31 10:04:20 has no hits.

BS13435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:46 Download gff for BS13435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-PA 171..870 17..716 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:22 Download gff for BS13435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 212..915 10..716 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:07 Download gff for BS13435.3prime
Subject Subject Range Query Range Percent Splice Strand
Gnmt-RA 212..915 10..716 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:07 Download gff for BS13435.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12674819..12674863 672..716 93 -> Minus
3R 12674999..12675126 544..671 100 -> Minus
3R 12675187..12675443 287..543 100 -> Minus
3R 12675736..12676009 10..286 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:22 Download gff for BS13435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8500541..8500585 672..716 93 -> Minus
arm_3R 8500721..8500848 544..671 100 -> Minus
arm_3R 8500909..8501165 287..543 100 -> Minus
arm_3R 8501458..8501731 10..286 98   Minus

BS13435.5prime Sequence

743 bp (622 high quality bases) assembled on 2006-10-13

> BS13435.5prime
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATTCCC

BS13435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6188-PA 870 CG6188-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 990 CG6188-RA 42..768 17..743 3620 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12675186..12675443 359..616 1290 100 Plus
3R 32079331 3R 12674649..12674863 17..231 1075 100 Plus
3R 32079331 3R 12674998..12675126 231..359 645 100 Plus
3R 32079331 3R 12675736..12675862 617..743 620 99.2 Plus
Blast to na_te.dros performed on 2015-01-31 10:04:27 has no hits.

BS13435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:47 Download gff for BS13435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-PA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:25 Download gff for BS13435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 34..767 9..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:09 Download gff for BS13435.5prime
Subject Subject Range Query Range Percent Splice Strand
Gnmt-RA 34..767 9..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:09 Download gff for BS13435.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12674641..12674863 9..231 98 -> Plus
3R 12674999..12675126 232..359 100 -> Plus
3R 12675187..12675443 360..616 100 -> Plus
3R 12675736..12675861 617..743 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:25 Download gff for BS13435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8500363..8500585 9..231 98 -> Plus
arm_3R 8500721..8500848 232..359 100 -> Plus
arm_3R 8500909..8501165 360..616 100 -> Plus
arm_3R 8501458..8501583 617..743 99   Plus

BS13435.complete Sequence

902 bp assembled on 2006-11-01

GenBank Submission: FJ637450

> BS13435.complete
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATCCCCACGGGCT
GAAACGATTCCAGGAGATTCTAGCCGAGATCTTCTCCGCCAAAGCCAAGC
ACCAGTTGTATGGTGACTTCAAGGAGATGAGCCAGGTGAAGAACCCCGCC
TTCTACATTCACCTGATCGAAAAGCCACAGGTTTAGAAGCTTTCTAGACC
AT

BS13435.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 870 CG6188-PA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 990 CG6188-RA 42..912 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12675736..12676006 617..887 1355 100 Plus
3R 32079331 3R 12675186..12675443 359..616 1290 100 Plus
3R 32079331 3R 12674649..12674863 17..231 1075 100 Plus
3R 32079331 3R 12674998..12675126 231..359 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:22:41 has no hits.

BS13435.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:13 Download gff for BS13435.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:53 Download gff for BS13435.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 33..914 9..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:01 Download gff for BS13435.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 42..911 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:13 Download gff for BS13435.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 33..914 9..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:14 Download gff for BS13435.complete
Subject Subject Range Query Range Percent Splice Strand
Gnmt-RA 42..911 17..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:14 Download gff for BS13435.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12674649..12674863 17..231 100 -> Plus
3R 12674999..12675126 232..359 100 -> Plus
3R 12675187..12675443 360..616 100 -> Plus
3R 12675736..12676005 617..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:01 Download gff for BS13435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8500371..8500585 17..231 100 -> Plus
arm_3R 8500721..8500848 232..359 100 -> Plus
arm_3R 8500909..8501165 360..616 100 -> Plus
arm_3R 8501458..8501727 617..886 100   Plus

BS13435.pep Sequence

Translation from 16 to 885

> BS13435.pep
MTTSADSVFVARSDGISAEGVRDQYADGKAAKVWEIFIGDKNSRTDNYKN
FLIDMLRNKGCKRVLDVACGTGVDSLMLVEEGFEVVSVDASDKMLKYALK
ERWARRNEAAFDKWVIEEANWLTLYDDIQEHIQDGFDAVICLGNSFAHLM
DGFGDQREHKQAIGNFEKCLKPGGVLLIDHRNYDNILETGATPAKSIYYN
TSHTADIKTSVLFYCGKPALVSMDYLIAGNKLTSEFRLSYYPHGLKRFQE
ILAEIFSAKAKHQLYGDFKEMSQVKNPAFYIHLIEKPQV*

BS13435.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-PA 289 CG6188-PA 1..289 1..289 1520 100 Plus