Clone Sequence Records
BS13435.3prime Sequence
716 bp (675 high quality bases) assembled on 2006-10-13
> BS13435.3prime
ATGGTCTAGAAAGCTTCTAAACCTGTGGCTTTTCGATCAGGTGAATGTAG
AAGGCGGGGTTCTTCACCTGGCTCATCTCCTTGAAGTCACCATACAACTG
GTGCTTGGCTTTGGCGGAGAAGATCTCGGCTAGAATCTCCTGGAATCGTT
TCAGCCCGTGGGGATAGTAGGACAGACGGAACTCACTGGTCAACTTGTTG
CCAGCGATCAGGTAGTCCATCGACACCAGGGCGGGCTTACCGCAGTAGAA
GAGCACGGATGTCTTGATGTCCGCCGTGTGACTCGTATTATAGTAGATGC
TCTTGGCAGGCGTAGCTCCCGTTTCCAGGATATTGTCGTAGTTGCGATGA
TCGATAAGCAGGACGCCTCCAGGCTTGAGGCACTTTTCGAAGTTGCCAAT
AGCCTGCTTGTGCTCCCGCTGATCCCCGAACCCGTCCATCAAGTGGGCAA
AGGAGTTGCCCAAGCAAATGACGGCATCGAAACCATCCTGAATGTGCTCC
TGAATGTCGTCGTACAGTGTCAACCAGTTGGCTTCCTCAATGACCCACTT
ATCGAAGGCAGCTTCATTTCGCCGGGCCCAGCGCTCCTTGAGGGCGTACT
TCAACATCTTATCAGAGGCATCTACGGACACAACTTCGAAGCCCTCCTCC
ACAAGCATCAGGGAGTCCACACCCGTTCCACAGGGCCCGTCTAGGACACG
CTTGCCTCCCTTATTG
BS13435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6188-PA | 870 | CG6188-RA | 171..870 | 716..17 | 3425 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 990 | CG6188-RA | 212..912 | 716..16 | 3460 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12675736..12676006 | 286..16 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 12675186..12675443 | 544..287 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 12674998..12675126 | 672..544 | 645 | 100 | Minus |
3R | 32079331 | 3R | 12674819..12674863 | 716..672 | 180 | 93.3 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:04:20 has no hits.
BS13435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:46 Download gff for
BS13435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-PA | 171..870 | 17..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:22 Download gff for
BS13435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 212..915 | 10..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:07 Download gff for
BS13435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gnmt-RA | 212..915 | 10..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:07 Download gff for
BS13435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12674819..12674863 | 672..716 | 93 | -> | Minus |
3R | 12674999..12675126 | 544..671 | 100 | -> | Minus |
3R | 12675187..12675443 | 287..543 | 100 | -> | Minus |
3R | 12675736..12676009 | 10..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:22 Download gff for
BS13435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8500541..8500585 | 672..716 | 93 | -> | Minus |
arm_3R | 8500721..8500848 | 544..671 | 100 | -> | Minus |
arm_3R | 8500909..8501165 | 287..543 | 100 | -> | Minus |
arm_3R | 8501458..8501731 | 10..286 | 98 | | Minus |
BS13435.5prime Sequence
743 bp (622 high quality bases) assembled on 2006-10-13
> BS13435.5prime
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATTCCC
BS13435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6188-PA | 870 | CG6188-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 990 | CG6188-RA | 42..768 | 17..743 | 3620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12675186..12675443 | 359..616 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 12674649..12674863 | 17..231 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 12674998..12675126 | 231..359 | 645 | 100 | Plus |
3R | 32079331 | 3R | 12675736..12675862 | 617..743 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:04:27 has no hits.
BS13435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:47 Download gff for
BS13435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:25 Download gff for
BS13435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 34..767 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:09 Download gff for
BS13435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gnmt-RA | 34..767 | 9..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:09 Download gff for
BS13435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12674641..12674863 | 9..231 | 98 | -> | Plus |
3R | 12674999..12675126 | 232..359 | 100 | -> | Plus |
3R | 12675187..12675443 | 360..616 | 100 | -> | Plus |
3R | 12675736..12675861 | 617..743 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:25 Download gff for
BS13435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8500363..8500585 | 9..231 | 98 | -> | Plus |
arm_3R | 8500721..8500848 | 232..359 | 100 | -> | Plus |
arm_3R | 8500909..8501165 | 360..616 | 100 | -> | Plus |
arm_3R | 8501458..8501583 | 617..743 | 99 | | Plus |
BS13435.complete Sequence
902 bp assembled on 2006-11-01
GenBank Submission: FJ637450
> BS13435.complete
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATCCCCACGGGCT
GAAACGATTCCAGGAGATTCTAGCCGAGATCTTCTCCGCCAAAGCCAAGC
ACCAGTTGTATGGTGACTTCAAGGAGATGAGCCAGGTGAAGAACCCCGCC
TTCTACATTCACCTGATCGAAAAGCCACAGGTTTAGAAGCTTTCTAGACC
AT
BS13435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 870 | CG6188-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 990 | CG6188-RA | 42..912 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12675736..12676006 | 617..887 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 12675186..12675443 | 359..616 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 12674649..12674863 | 17..231 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 12674998..12675126 | 231..359 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:22:41 has no hits.
BS13435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:13 Download gff for
BS13435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:53 Download gff for
BS13435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 33..914 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:01 Download gff for
BS13435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 42..911 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:13 Download gff for
BS13435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 33..914 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:14 Download gff for
BS13435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gnmt-RA | 42..911 | 17..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:14 Download gff for
BS13435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12674649..12674863 | 17..231 | 100 | -> | Plus |
3R | 12674999..12675126 | 232..359 | 100 | -> | Plus |
3R | 12675187..12675443 | 360..616 | 100 | -> | Plus |
3R | 12675736..12676005 | 617..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:01 Download gff for
BS13435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8500371..8500585 | 17..231 | 100 | -> | Plus |
arm_3R | 8500721..8500848 | 232..359 | 100 | -> | Plus |
arm_3R | 8500909..8501165 | 360..616 | 100 | -> | Plus |
arm_3R | 8501458..8501727 | 617..886 | 100 | | Plus |
BS13435.pep Sequence
Translation from 16 to 885
> BS13435.pep
MTTSADSVFVARSDGISAEGVRDQYADGKAAKVWEIFIGDKNSRTDNYKN
FLIDMLRNKGCKRVLDVACGTGVDSLMLVEEGFEVVSVDASDKMLKYALK
ERWARRNEAAFDKWVIEEANWLTLYDDIQEHIQDGFDAVICLGNSFAHLM
DGFGDQREHKQAIGNFEKCLKPGGVLLIDHRNYDNILETGATPAKSIYYN
TSHTADIKTSVLFYCGKPALVSMDYLIAGNKLTSEFRLSYYPHGLKRFQE
ILAEIFSAKAKHQLYGDFKEMSQVKNPAFYIHLIEKPQV*
BS13435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-PA | 289 | CG6188-PA | 1..289 | 1..289 | 1520 | 100 | Plus |