Clone BS13436 Report

Search the DGRC for BS13436

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptAnce-3-RB
Protein status:BS13436.pep: full length peptide match
Sequenced Size:2567

Clone Sequence Records

BS13436.3prime Sequence

684 bp (646 high quality bases) assembled on 2006-10-13

> BS13436.3prime
ATGGTCTAGAAAGCTTTCATAATAAACGTAGGCTGAAGTAAAGGTAAATC
AGCAAGATCAGTGGGTATAGGAATGGCGCTGACTTTTGTCCCGTCGCACC
ATTGTAATATCCACCAAAGACCTGCAAGCCAGCAGTTTCGATGCTCCTCT
TGCAGTAGTCACCATCGTAGTTCCATCCCACATACTCGTTCGTCCGCAGA
TTCTCCTGGCGCAGCCATTCCTCCAGTGGAGCAAAGTACTCCCGCAGAGC
GGTTCCATCCAAGCGACCCTCCCTCAGGGTTTCCTCAAGGACCTCTTGCC
ATGGCTGGGAGGCTCCCTTGGACATCAGGGTTTTGAGAATATTTCCCGCT
GCTGGCTGGCGATAAATGTCGCATTGGTGGAGCGGCTTCCTAGGATCACC
GGGCACATACTGGCCGGACTCGCGGCACAGGCCTCGATAGATCTGGAACT
GCAGAACCGTGGAGAAAAAGTATTTGATATAGGGAATATTTGCTGGTATA
TGGTATTTGGCTCCCGGGTCGAAATCCTTTTCTGATCGCAAAACTGGGGG
CTTTATACCGGAATACTTTTCTCGTAAATTCCAGTAGTGACAGTTCATTG
TTTCGCTTATTCGCATTGCCACTAAAGACATCATACCGCCAATTGTCCAG
AGATAATGCAAAAGGTAAAAATGCCACCTTTGTC

BS13436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17988-PB 2535 Ance-3-RB 1873..2535 680..17 3280 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 3426 CG17988-RC 2156..2820 680..15 3305 99.8 Minus
Ance-3-RB 2981 CG17988-RB 2156..2820 680..15 3305 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13955265..13955582 332..15 1590 100 Minus
2L 23513712 2L 13954713..13954857 477..333 710 99.3 Minus
2L 23513712 2L 13918146..13918245 573..474 500 100 Minus
2L 23513712 2L 13917975..13918080 679..573 485 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 04:19:15 has no hits.

BS13436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:48 Download gff for BS13436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17988-PB 1870..2535 17..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:43 Download gff for BS13436.3prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 2153..2824 8..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:51 Download gff for BS13436.3prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 2153..2824 8..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:51 Download gff for BS13436.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13917972..13918080 573..684 95 -> Minus
2L 13918147..13918245 474..572 100 -> Minus
2L 13954717..13954857 333..473 100 -> Minus
2L 13955265..13955586 8..332 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:43 Download gff for BS13436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13917972..13918080 573..684 95 -> Minus
arm_2L 13918147..13918245 474..572 100 -> Minus
arm_2L 13954717..13954857 333..473 100 -> Minus
arm_2L 13955265..13955586 8..332 99   Minus

BS13436.5prime Sequence

607 bp (470 high quality bases) assembled on 2006-10-13

> BS13436.5prime
GAAGTTATCAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCC
TCAGCCTTAGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCC
ACCCCGCAGCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCAC
AACTCCGGCCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGAC
CACCTTACTCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGAC
GACTTTAGGTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGG
CTATCCCACGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTA
GGTTTTCCAACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAAT
TACGGCAACGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTC
CTCCCAAGGAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATA
ATAATCCGAATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCAAG
AATCCCTTCCTTTCGAACCAGGATCGTTTCAATCCTAAATCAGGGCTACT
TGGAACG

BS13436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17988-PB 2535 Ance-3-RB 1..590 17..607 2890 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 3426 CG17988-RC 284..873 17..607 2915 99.7 Plus
Ance-3-RB 2981 CG17988-RB 284..873 17..607 2915 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13915398..13915745 259..607 1680 99.4 Plus
2L 23513712 2L 13915008..13915250 17..259 1215 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:01:20 has no hits.

BS13436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:48 Download gff for BS13436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17988-PB 1..590 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:36 Download gff for BS13436.5prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..873 17..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:53 Download gff for BS13436.5prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..873 17..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:53 Download gff for BS13436.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13915008..13915250 17..259 100 -> Plus
2L 13915399..13915745 260..607 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:36 Download gff for BS13436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13915008..13915250 17..259 100 -> Plus
arm_2L 13915399..13915745 260..607 99   Plus

BS13436.complete Sequence

2567 bp assembled on 2008-08-15

GenBank Submission: KX804308

> BS13436.complete
GAAGTTATCAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCC
TCAGCCTTAGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCC
ACCCCGCAGCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCAC
AACTCCGGCCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGAC
CACCTTACTCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGAC
GACTTTAGGTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGG
CTATCCCACGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTA
GGTTTTCCAACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAAT
TACGGCAACGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTC
CTCCCAAGGAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATA
ATAATCCGAATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCGAG
AATCCCTTCCTTTCGAACCAGGATCGTTTCAATCTAAATCAGGGCTACTT
GGAACGTCAGCGATATCAGCAGGATCGTCGCTATCAGCAGGAGTTGGAGA
AGCTGCGCATCCTGCTGGTGGAGTCGGATCAGAAAGGATCACTGGAGTGC
ACCGCCAATGTGGCTGCCCAGTGGAACTTCGAGACGAATGTGAATGATTT
TACCCAAACGGAAGCGCTAAATGCTCAACAGCGATATGTGGAGTTCCAGC
GCATCACTGCCGAGCAATCCAAGCGGATCAATAAGGATCTCATCTTCGAC
CGTCGCCTCTACAGACAACTGATGCTGCAGTCGGAAGTGGGACCCAATGC
TCTGCCCCTAGATGTATTGGATAGGTATAATCGCCTGCTCAATGAGATGC
TGTTCCTGTACAACAGCGCCGAAATCTGTGCCTACCAGCAGCCCTTTCAG
TGCGATCTTCACTACATACCCCAGCTGAAGGACATCATGGCCAAGAGCAG
GGACTGGGATGAGCTGCAGCACACTTGGGTGGAATACCACAGGAAGGCGG
GACGCGGAATGCGGGATAGTTATGAGCAGTTGATCGATGTGATGCAGGAG
GTGGCCTACGTAAACAATGTCACTAATGGCGGGGAGTATTGGTATTTGGC
CTACGAGTCGGGTAACTTTCGCCAGGATATGGACATTGTTTGGGAACAGA
TAAGGCCTCTTTACGAAGGATTGCATGCCTATGTACGTCGCAAGCTGAGG
GATTACTATGGTCCAGATCGGATAAACCGCATAGCACCCATTCCCTCGCA
CATTCTGGGCAACATGTACGGCCAGTCGTGGTCCAATGTGTTGGACATTT
TGATACCCTATCCAGGCCGGAAGCTGATCGACGTCACGCCGCGAATGGTG
GAACAGGGCTACACACCGCAACTGATGTTCCAGTTGGCCGAGGAGTTCTT
CACCTCCATTAATATGTCTGCGGTGGGTCCGGAGTTCTATCGCAACTCCA
TCTTCGAACAGCCCCTGGATCGGAGGGTCCTGTGTGAGCCATCCGCCTGG
GACTTTTGCAATCGTCACGATTTCCGCGTTAAAATCTGTACGGATATCAA
TCAGCGAAGTTTGATTAGTGTGCACCATGAGATGGCGCACATTCAGTACT
TTCTGCAGTATCGTCACCTGCCCAAGATCTTCAGAAATGGAGCGAATCCG
GCATTTCACCAGGCGGTGGGCGATGCCATTGGCCTGTCCGTATCAACTCC
AAGGCATTTGCAGACTCTGGGACTACTACAAAGATCCCTCGATGAGTCCA
GCTATGATATTAACTATCTGTTCACCATGGCCATTGACAAGGTGGCATTT
TTACCTTTTGCATTATCTCTGGACAATTGGCGGTATGATGTCTTTAGTGG
CAATGCGAATAAGCGAACAATGAACTGTCACTACTGGAATTTACGAGAAA
AGTATTCCGGTATAAAGCCCCCAGTTTTGCGATCAGAAAAGGATTTCGAC
CCGGGAGCCAAATACCATATACCAGCAAATATTCCCTATATCAAATACTT
TTTCTCCACGGTTCTGCAGTTCCAGATCTATCGAGGCCTGTGCCGCGAGT
CCGGCCAGTATGTGCCCGGTGATCCTAGGAAGCCGCTCCACCAATGCGAC
ATTTATCGCCAGCCAGCAGCGGGAAATATTCTCAAAACCCTGATGTCCAA
GGGAGCCTCCCAGCCATGGCAAGAGGTCCTTGAGGAAACCCTGAGGGAGG
GTCGCTTGGATGGAACCGCTCTGCGGGAGTACTTTGCTCCACTGGAGGAA
TGGCTGCGCCAGGAGAATCTGCGGACGAACGAGTATGTGGGATGGAACTA
CGATGGTGACTACTGCAAGAGGAGCATCGAAACTGCTGGCTTGCAGGTCT
TTGGTGGATATTACAATGGTGCGACGGGACAAAAGTCAGCGCCATTCCTA
TACCCACTGATCTTGCTGATTTACCTTTACTTCAGCCTACGTTTATTATG
AAAGCTTTCTAGACCAT

BS13436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 2535 CG17988-PC 1..2535 17..2551 12675 100 Plus
Ance-3-RB 2535 CG17988-PB 1..2535 17..2551 12675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 3426 CG17988-RC 284..2820 17..2553 12685 100 Plus
Ance-3-RB 2981 CG17988-RB 284..2820 17..2553 12685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13916926..13917652 1167..1893 3635 100 Plus
2L 23513712 2L 13915398..13915905 259..766 2540 100 Plus
2L 23513712 2L 13955265..13955582 2236..2553 1590 100 Plus
2L 23513712 2L 13915008..13915250 17..259 1215 100 Plus
2L 23513712 2L 13916620..13916861 925..1166 1210 100 Plus
2L 23513712 2L 13916405..13916564 766..925 800 100 Plus
2L 23513712 2L 13954713..13954857 2091..2235 710 99.3 Plus
2L 23513712 2L 13917975..13918080 1890..1995 530 100 Plus
2L 23513712 2L 13918146..13918245 1995..2094 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:14:40 has no hits.

BS13436.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:21 Download gff for BS13436.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2824 17..2560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:48 Download gff for BS13436.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2817 17..2550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:46 Download gff for BS13436.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2817 17..2550 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:31 Download gff for BS13436.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2817 17..2550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:31 Download gff for BS13436.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13916621..13916861 926..1166 100 -> Plus
2L 13915008..13915250 17..259 100 -> Plus
2L 13915399..13915905 260..766 100 -> Plus
2L 13916406..13916564 767..925 100 -> Plus
2L 13916926..13917650 1167..1891 100 -> Plus
2L 13917977..13918080 1892..1995 100 -> Plus
2L 13918147..13918245 1996..2094 100 -> Plus
2L 13954717..13954857 2095..2235 100 -> Plus
2L 13955265..13955579 2236..2550 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:48 Download gff for BS13436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13918147..13918245 1996..2094 100 -> Plus
arm_2L 13954717..13954857 2095..2235 100 -> Plus
arm_2L 13916621..13916861 926..1166 100 -> Plus
arm_2L 13915008..13915250 17..259 100 -> Plus
arm_2L 13915399..13915905 260..766 100 -> Plus
arm_2L 13916406..13916564 767..925 100 -> Plus
arm_2L 13916926..13917650 1167..1891 100 -> Plus
arm_2L 13917977..13918080 1892..1995 100 -> Plus
arm_2L 13955265..13955579 2236..2550 100   Plus

BS13436.pep Sequence

Translation from 16 to 2550

> BS13436.pep
MHSVSLLGCLCLSLSLTLSTGSPQLNLPTPQPEVFYNGYTPNVATTPAQL
RADRDRDQRYGPPYSDAGGGGNTDDGLDDFRFGQTDDERMRIGYGYPTPR
VNFSDSPFSGARFSNHNYGPISSTTERNYGNDANLNGRYSDVPYSSQGER
NFNPNDQYNYNNNPNVEFVGINNRNRFENPFLSNQDRFNLNQGYLERQRY
QQDRRYQQELEKLRILLVESDQKGSLECTANVAAQWNFETNVNDFTQTEA
LNAQQRYVEFQRITAEQSKRINKDLIFDRRLYRQLMLQSEVGPNALPLDV
LDRYNRLLNEMLFLYNSAEICAYQQPFQCDLHYIPQLKDIMAKSRDWDEL
QHTWVEYHRKAGRGMRDSYEQLIDVMQEVAYVNNVTNGGEYWYLAYESGN
FRQDMDIVWEQIRPLYEGLHAYVRRKLRDYYGPDRINRIAPIPSHILGNM
YGQSWSNVLDILIPYPGRKLIDVTPRMVEQGYTPQLMFQLAEEFFTSINM
SAVGPEFYRNSIFEQPLDRRVLCEPSAWDFCNRHDFRVKICTDINQRSLI
SVHHEMAHIQYFLQYRHLPKIFRNGANPAFHQAVGDAIGLSVSTPRHLQT
LGLLQRSLDESSYDINYLFTMAIDKVAFLPFALSLDNWRYDVFSGNANKR
TMNCHYWNLREKYSGIKPPVLRSEKDFDPGAKYHIPANIPYIKYFFSTVL
QFQIYRGLCRESGQYVPGDPRKPLHQCDIYRQPAAGNILKTLMSKGASQP
WQEVLEETLREGRLDGTALREYFAPLEEWLRQENLRTNEYVGWNYDGDYC
KRSIETAGLQVFGGYYNGATGQKSAPFLYPLILLIYLYFSLRLL*

BS13436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-PC 844 CG17988-PC 1..844 1..844 4553 100 Plus
Ance-3-PB 844 CG17988-PB 1..844 1..844 4553 100 Plus
Ance-PC 615 CG8827-PC 46..606 234..793 1294 41.5 Plus
Ance-PB 615 CG8827-PB 46..606 234..793 1294 41.5 Plus
Ance-PA 615 CG8827-PA 46..606 234..793 1294 41.5 Plus