Clone Sequence Records
BS13438.3prime Sequence
715 bp (636 high quality bases) assembled on 2006-10-13
> BS13438.3prime
ATGGTCTAGAAAGCTTTCAGTAGTGCTGAGCGGGACGTCCCCTTCCGGAC
ACGATGGTATGACCATTCCTATCGATTGTGACAGTGCGTCCGTCCGGACG
CTTCCAAACGGAGACATTATTGTCCCAAATTCCTGCCTGATCGTCGCGGG
CCACAAAGTTCTCACCCTGGACGCGGGCATCGTTGATCCCACGGCGGAAA
CGTTGAGCGGAGAAGCCACCGTTACCGAAATCAACAGTGCGATCTGGTCG
CTCCACATGGAACTGTGGACTGCGTCGACTGCGTTGAATATAGACGCCGC
CATTACCAATGGTTACGGTGCGATCTGGGCGTGCCACATGAAGCTGTGGA
CTGCGTCGGCCACGCTGAATGTAGAATCCTCCGTTTCCAACGTCAACAGT
GCGACCGGGACGCTCTACGTGAAACTGCGGACTGCGCCGGGCACGTTGTG
GGATTCCCACGCTCTTAGCTCCATTGGGCCCTAAATTTTTGGCGGAAAAA
TTGGGACCACTGATGGTGTGGGAAGCTGGTCCACCAGCGTTCTTTCGGTT
AACAAACGTGTTGCCCGCCTCATCGGTGTACACATGCTCACCCCGTTGAG
GAGCGTTTTGGAACTGGCCACCCACTCCCGGCACGCTGTAGGTGCCTTCA
TTCTGGCCCCTTATATAGACCTGATTGCCCGGTGAACCGAAGACATGCGG
CCCATTGCGACCGTC
BS13438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-PA | 774 | CG33470-RA | 76..774 | 715..17 | 3495 | 100 | Minus |
CG18279-PA | 774 | IM10-RA | 76..774 | 715..17 | 3495 | 100 | Minus |
CG33470-PB | 807 | CG33470-RB | 76..768 | 715..23 | 3465 | 100 | Minus |
CG18279-PB | 807 | IM10-RB | 76..768 | 715..23 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 904 | CG33470-RC | 107..807 | 715..15 | 3505 | 100 | Minus |
CG33470-RA | 1159 | CG33470-RA | 107..807 | 715..15 | 3505 | 100 | Minus |
IM10-RC | 1160 | CG18279-RC | 108..808 | 715..15 | 3505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13407437..13407942 | 528..23 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 13412164..13412669 | 528..23 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 13411918..13412107 | 715..526 | 950 | 100 | Minus |
2R | 25286936 | 2R | 13407191..13407380 | 715..526 | 950 | 100 | Minus |
2R | 25286936 | 2R | 8934132..8934239 | 187..80 | 300 | 85.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:17:52 has no hits.
BS13438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:49 Download gff for
BS13438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18279-PA | 76..774 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:25 Download gff for
BS13438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RC | 107..814 | 9..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:13 Download gff for
BS13438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM10-RC | 108..815 | 9..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:13 Download gff for
BS13438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13407191..13407380 | 526..715 | 100 | -> | Minus |
2R | 13407440..13407950 | 15..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:25 Download gff for
BS13438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9294696..9294885 | 526..715 | 100 | -> | Minus |
arm_2R | 9294945..9295455 | 15..525 | 99 | | Minus |
BS13438.5prime Sequence
713 bp (661 high quality bases) assembled on 2006-10-13
> BS13438.5prime
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAAGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAGCGTCCGG
BS13438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-PA | 774 | CG33470-RA | 1..697 | 17..713 | 3460 | 99.8 | Plus |
CG33470-PB | 807 | CG33470-RB | 1..697 | 17..713 | 3460 | 99.8 | Plus |
CG18279-PA | 774 | IM10-RA | 1..697 | 17..713 | 3460 | 99.8 | Plus |
CG18279-PB | 807 | IM10-RB | 1..697 | 17..713 | 3460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 904 | CG33470-RC | 32..728 | 17..713 | 3470 | 99.9 | Plus |
CG33470-RA | 1159 | CG33470-RA | 32..728 | 17..713 | 3470 | 99.9 | Plus |
IM10-RC | 1160 | CG18279-RC | 33..729 | 17..713 | 3470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13407437..13407871 | 279..713 | 2160 | 99.8 | Plus |
2R | 25286936 | 2R | 13412164..13412598 | 279..713 | 2160 | 99.8 | Plus |
2R | 25286936 | 2R | 13407167..13407380 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 13411894..13412107 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 8934132..8934225 | 620..713 | 275 | 86.2 | Plus |
2R | 25286936 | 2R | 13407043..13407094 | 17..68 | 260 | 100 | Plus |
2R | 25286936 | 2R | 13411770..13411821 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:39:20 has no hits.
BS13438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:49 Download gff for
BS13438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18279-PB | 1..697 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:41 Download gff for
BS13438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RC | 23..728 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:54 Download gff for
BS13438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM10-RC | 24..729 | 9..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:54 Download gff for
BS13438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13407034..13407094 | 9..68 | 95 | -> | Plus |
2R | 13407168..13407380 | 69..281 | 100 | -> | Plus |
2R | 13407440..13407871 | 282..713 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:41 Download gff for
BS13438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9294539..9294599 | 9..68 | 95 | -> | Plus |
arm_2R | 9294673..9294885 | 69..281 | 100 | -> | Plus |
arm_2R | 9294945..9295376 | 282..713 | 99 | | Plus |
BS13438.complete Sequence
806 bp assembled on 2006-11-01
GenBank Submission: FJ637451
> BS13438.complete
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAGGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAGCGTCCGGACGGACGCACTGTCACAATCGATAGGAATGGTCATAC
CATCGTGTCCGGAAGGGGACGTCCCGCTCAGCACTACTGAAAGCTTTCTA
GACCAT
BS13438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 774 | CG33470-PC | 1..774 | 17..790 | 3870 | 100 | Plus |
CG33470-RA | 774 | CG33470-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
IM10-RC | 774 | CG18279-PC | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 904 | CG33470-RC | 32..807 | 17..792 | 3880 | 100 | Plus |
CG33470-RA | 1159 | CG33470-RA | 32..807 | 17..792 | 3880 | 100 | Plus |
IM10-RC | 1160 | CG18279-RC | 33..808 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13407437..13407942 | 279..784 | 2530 | 100 | Plus |
2R | 25286936 | 2R | 13412164..13412669 | 279..784 | 2530 | 100 | Plus |
2R | 25286936 | 2R | 13407167..13407380 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 13411894..13412107 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 8934132..8934239 | 620..727 | 300 | 85.2 | Plus |
2R | 25286936 | 2R | 13407043..13407094 | 17..68 | 260 | 100 | Plus |
2R | 25286936 | 2R | 13411770..13411821 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:15:01 has no hits.
BS13438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:17 Download gff for
BS13438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:55 Download gff for
BS13438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RA | 29..820 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:26 Download gff for
BS13438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RC | 32..804 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:17 Download gff for
BS13438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RA | 29..820 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:55 Download gff for
BS13438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM10-RC | 33..805 | 17..789 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:55 Download gff for
BS13438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13407043..13407094 | 17..68 | 100 | -> | Plus |
2R | 13407168..13407380 | 69..281 | 100 | -> | Plus |
2R | 13407440..13407947 | 282..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:26 Download gff for
BS13438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9294548..9294599 | 17..68 | 100 | -> | Plus |
arm_2R | 9294673..9294885 | 69..281 | 100 | -> | Plus |
arm_2R | 9294945..9295452 | 282..789 | 99 | | Plus |
BS13438.pep Sequence
Translation from 16 to 789
> BS13438.pep
MKSFGLIALAICGVICVAAEPQHTYDGRNGPHVFGSPGNQVYIRGQNEGT
YSVPGVGGQFQNAPQRGEHVYTDEAGNTFVNRKNAGGPASHTISGPNFSA
KNLGPNGAKSVGIPQRARRSPQFHVERPGRTVDVGNGGFYIQRGRRSPQL
HVARPDRTVTIGNGGVYIQRSRRSPQFHVERPDRTVDFGNGGFSAQRFRR
GINDARVQGENFVARDDQAGIWDNNVSVWKRPDGRTVTIDRNGHTIVSGR
GRPAQHY*
BS13438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-PC | 257 | CG33470-PC | 1..257 | 1..257 | 1388 | 100 | Plus |
CG33470-PA | 257 | CG33470-PA | 1..257 | 1..257 | 1388 | 100 | Plus |
IM10-PC | 257 | CG18279-PC | 1..257 | 1..257 | 1388 | 100 | Plus |
IM10-PA | 257 | CG18279-PA | 1..257 | 1..257 | 1388 | 100 | Plus |
CG13749-PB | 183 | CG13749-PB | 17..176 | 18..182 | 557 | 61.8 | Plus |