Clone BS13438 Report

Search the DGRC for BS13438

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG33470-RA
Protein status:BS13438.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13438.3prime Sequence

715 bp (636 high quality bases) assembled on 2006-10-13

> BS13438.3prime
ATGGTCTAGAAAGCTTTCAGTAGTGCTGAGCGGGACGTCCCCTTCCGGAC
ACGATGGTATGACCATTCCTATCGATTGTGACAGTGCGTCCGTCCGGACG
CTTCCAAACGGAGACATTATTGTCCCAAATTCCTGCCTGATCGTCGCGGG
CCACAAAGTTCTCACCCTGGACGCGGGCATCGTTGATCCCACGGCGGAAA
CGTTGAGCGGAGAAGCCACCGTTACCGAAATCAACAGTGCGATCTGGTCG
CTCCACATGGAACTGTGGACTGCGTCGACTGCGTTGAATATAGACGCCGC
CATTACCAATGGTTACGGTGCGATCTGGGCGTGCCACATGAAGCTGTGGA
CTGCGTCGGCCACGCTGAATGTAGAATCCTCCGTTTCCAACGTCAACAGT
GCGACCGGGACGCTCTACGTGAAACTGCGGACTGCGCCGGGCACGTTGTG
GGATTCCCACGCTCTTAGCTCCATTGGGCCCTAAATTTTTGGCGGAAAAA
TTGGGACCACTGATGGTGTGGGAAGCTGGTCCACCAGCGTTCTTTCGGTT
AACAAACGTGTTGCCCGCCTCATCGGTGTACACATGCTCACCCCGTTGAG
GAGCGTTTTGGAACTGGCCACCCACTCCCGGCACGCTGTAGGTGCCTTCA
TTCTGGCCCCTTATATAGACCTGATTGCCCGGTGAACCGAAGACATGCGG
CCCATTGCGACCGTC

BS13438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-PA 774 CG33470-RA 76..774 715..17 3495 100 Minus
CG18279-PA 774 IM10-RA 76..774 715..17 3495 100 Minus
CG33470-PB 807 CG33470-RB 76..768 715..23 3465 100 Minus
CG18279-PB 807 IM10-RB 76..768 715..23 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 904 CG33470-RC 107..807 715..15 3505 100 Minus
CG33470-RA 1159 CG33470-RA 107..807 715..15 3505 100 Minus
IM10-RC 1160 CG18279-RC 108..808 715..15 3505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13407437..13407942 528..23 2530 100 Minus
2R 25286936 2R 13412164..13412669 528..23 2530 100 Minus
2R 25286936 2R 13411918..13412107 715..526 950 100 Minus
2R 25286936 2R 13407191..13407380 715..526 950 100 Minus
2R 25286936 2R 8934132..8934239 187..80 300 85.2 Minus
Blast to na_te.dros performed on 2015-02-10 17:17:52 has no hits.

BS13438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:49 Download gff for BS13438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18279-PA 76..774 17..715 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:25 Download gff for BS13438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33470-RC 107..814 9..715 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:13 Download gff for BS13438.3prime
Subject Subject Range Query Range Percent Splice Strand
IM10-RC 108..815 9..715 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:13 Download gff for BS13438.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13407191..13407380 526..715 100 -> Minus
2R 13407440..13407950 15..525 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:25 Download gff for BS13438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9294696..9294885 526..715 100 -> Minus
arm_2R 9294945..9295455 15..525 99   Minus

BS13438.5prime Sequence

713 bp (661 high quality bases) assembled on 2006-10-13

> BS13438.5prime
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAAGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAGCGTCCGG

BS13438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-PA 774 CG33470-RA 1..697 17..713 3460 99.8 Plus
CG33470-PB 807 CG33470-RB 1..697 17..713 3460 99.8 Plus
CG18279-PA 774 IM10-RA 1..697 17..713 3460 99.8 Plus
CG18279-PB 807 IM10-RB 1..697 17..713 3460 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 904 CG33470-RC 32..728 17..713 3470 99.9 Plus
CG33470-RA 1159 CG33470-RA 32..728 17..713 3470 99.9 Plus
IM10-RC 1160 CG18279-RC 33..729 17..713 3470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13407437..13407871 279..713 2160 99.8 Plus
2R 25286936 2R 13412164..13412598 279..713 2160 99.8 Plus
2R 25286936 2R 13407167..13407380 68..281 1070 100 Plus
2R 25286936 2R 13411894..13412107 68..281 1070 100 Plus
2R 25286936 2R 8934132..8934225 620..713 275 86.2 Plus
2R 25286936 2R 13407043..13407094 17..68 260 100 Plus
2R 25286936 2R 13411770..13411821 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:39:20 has no hits.

BS13438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:49 Download gff for BS13438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18279-PB 1..697 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:41 Download gff for BS13438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33470-RC 23..728 9..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:54 Download gff for BS13438.5prime
Subject Subject Range Query Range Percent Splice Strand
IM10-RC 24..729 9..713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:54 Download gff for BS13438.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13407034..13407094 9..68 95 -> Plus
2R 13407168..13407380 69..281 100 -> Plus
2R 13407440..13407871 282..713 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:41 Download gff for BS13438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9294539..9294599 9..68 95 -> Plus
arm_2R 9294673..9294885 69..281 100 -> Plus
arm_2R 9294945..9295376 282..713 99   Plus

BS13438.complete Sequence

806 bp assembled on 2006-11-01

GenBank Submission: FJ637451

> BS13438.complete
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAGGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAGCGTCCGGACGGACGCACTGTCACAATCGATAGGAATGGTCATAC
CATCGTGTCCGGAAGGGGACGTCCCGCTCAGCACTACTGAAAGCTTTCTA
GACCAT

BS13438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 774 CG33470-PC 1..774 17..790 3870 100 Plus
CG33470-RA 774 CG33470-PA 1..774 17..790 3870 100 Plus
IM10-RC 774 CG18279-PC 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 904 CG33470-RC 32..807 17..792 3880 100 Plus
CG33470-RA 1159 CG33470-RA 32..807 17..792 3880 100 Plus
IM10-RC 1160 CG18279-RC 33..808 17..792 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13407437..13407942 279..784 2530 100 Plus
2R 25286936 2R 13412164..13412669 279..784 2530 100 Plus
2R 25286936 2R 13407167..13407380 68..281 1070 100 Plus
2R 25286936 2R 13411894..13412107 68..281 1070 100 Plus
2R 25286936 2R 8934132..8934239 620..727 300 85.2 Plus
2R 25286936 2R 13407043..13407094 17..68 260 100 Plus
2R 25286936 2R 13411770..13411821 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:15:01 has no hits.

BS13438.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:17 Download gff for BS13438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:55 Download gff for BS13438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RA 29..820 9..798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:26 Download gff for BS13438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RC 32..804 17..789 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:17 Download gff for BS13438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RA 29..820 9..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:55 Download gff for BS13438.complete
Subject Subject Range Query Range Percent Splice Strand
IM10-RC 33..805 17..789 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:55 Download gff for BS13438.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13407043..13407094 17..68 100 -> Plus
2R 13407168..13407380 69..281 100 -> Plus
2R 13407440..13407947 282..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:26 Download gff for BS13438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9294548..9294599 17..68 100 -> Plus
arm_2R 9294673..9294885 69..281 100 -> Plus
arm_2R 9294945..9295452 282..789 99   Plus

BS13438.pep Sequence

Translation from 16 to 789

> BS13438.pep
MKSFGLIALAICGVICVAAEPQHTYDGRNGPHVFGSPGNQVYIRGQNEGT
YSVPGVGGQFQNAPQRGEHVYTDEAGNTFVNRKNAGGPASHTISGPNFSA
KNLGPNGAKSVGIPQRARRSPQFHVERPGRTVDVGNGGFYIQRGRRSPQL
HVARPDRTVTIGNGGVYIQRSRRSPQFHVERPDRTVDFGNGGFSAQRFRR
GINDARVQGENFVARDDQAGIWDNNVSVWKRPDGRTVTIDRNGHTIVSGR
GRPAQHY*

BS13438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-PC 257 CG33470-PC 1..257 1..257 1388 100 Plus
CG33470-PA 257 CG33470-PA 1..257 1..257 1388 100 Plus
IM10-PC 257 CG18279-PC 1..257 1..257 1388 100 Plus
IM10-PA 257 CG18279-PA 1..257 1..257 1388 100 Plus
CG13749-PB 183 CG13749-PB 17..176 18..182 557 61.8 Plus