Clone BS13440 Report

Search the DGRC for BS13440

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG3939-RA
Protein status:BS13440.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13440.5prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS13440.5prime
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAATAAAAGCTTTCTAGACC

BS13440.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-PA 408 CG3939-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 747 CG3939-RB 313..722 17..426 2050 100 Plus
CG3939-RA 931 CG3939-RA 497..906 17..426 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3175933..3176198 161..426 1330 100 Plus
X 23542271 X 3175514..3175658 17..161 725 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:45:57 has no hits.

BS13440.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:50 Download gff for BS13440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-PA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:36 Download gff for BS13440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..906 17..426 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:11 Download gff for BS13440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..906 17..426 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:11 Download gff for BS13440.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3175514..3175658 17..161 100 -> Plus
X 3175934..3176198 162..426 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:36 Download gff for BS13440.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3069547..3069691 17..161 100 -> Plus
arm_X 3069967..3070231 162..426 100   Plus

BS13440.3prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS13440.3prime
ATGGTCTAGAAAGCTTTTATTGGGCGACAAAATTGGACTTCTTCGGATCG
GTCTCCTCGAAAAAGAGCTCCAGAAGACTCGACTTGAGCAGCTGATCCCC
ATCCAGGCGCTCCACGCCCTTCCAGCGTATAAGGGTCGGTATGCCTTCCA
CCGAGTATGGCGGCTTTCGGAACATGTTGTCCTTGCCTATCCAGGATTCC
CGGCTACCCACGTCCACCACCAGGATCATGCAATCCGCCGGCGCGTGGTT
GCGAAAGGCACTCATGATAGTTTCCTCGGCCGCCACGCAGTCCGGACACC
AGCTGCGTCCGTCCTTGTCTTTCTCGCCGTAGAAGTAGATGTAGATGGGG
CTGCGCTGGTTCTCGTACAGCTTGATCAGATTTTCCATCTCCTTGAAGCC
CCGTGCCGGCACATATTCGGGCATGTCGACTGATAACT

BS13440.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-PA 408 CG3939-RA 1..408 424..17 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 747 CG3939-RB 313..722 424..15 2050 100 Minus
CG3939-RA 931 CG3939-RA 497..906 424..15 2050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3175933..3176198 280..15 1330 100 Minus
X 23542271 X 3175514..3175658 424..280 725 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:14:07 has no hits.

BS13440.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:50 Download gff for BS13440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-PA 1..408 17..424 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:49 Download gff for BS13440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..906 15..424 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:40 Download gff for BS13440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..906 15..424 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:40 Download gff for BS13440.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3175514..3175658 280..424 100 -> Minus
X 3175934..3176198 15..279 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:49 Download gff for BS13440.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3069547..3069691 280..424 100 -> Minus
arm_X 3069967..3070231 15..279 100   Minus

BS13440.complete Sequence

440 bp assembled on 2006-11-01

GenBank Submission: FJ637452

> BS13440.complete
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAATAAAAGCTTTCTAGACCAT

BS13440.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 408 CG3939-PB 1..408 17..424 2040 100 Plus
CG3939-RA 408 CG3939-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 747 CG3939-RB 313..722 17..426 2050 100 Plus
CG3939-RA 931 CG3939-RA 497..906 17..426 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3175933..3176198 161..426 1330 100 Plus
X 23542271 X 3175514..3175658 17..161 725 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:23:38 has no hits.

BS13440.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:18 Download gff for BS13440.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:56 Download gff for BS13440.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 396..805 17..426 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:53 Download gff for BS13440.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..902 17..422 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:18 Download gff for BS13440.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 396..805 17..426 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:00 Download gff for BS13440.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..902 17..422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:00 Download gff for BS13440.complete
Subject Subject Range Query Range Percent Splice Strand
X 3175514..3175658 17..161 100 -> Plus
X 3175934..3176194 162..422 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:53 Download gff for BS13440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3069547..3069691 17..161 100 -> Plus
arm_X 3069967..3070227 162..422 100   Plus

BS13440.pep Sequence

Translation from 16 to 423

> BS13440.pep
MPEYVPARGFKEMENLIKLYENQRSPIYIYFYGEKDKDGRSWCPDCVAAE
ETIMSAFRNHAPADCMILVVDVGSRESWIGKDNMFRKPPYSVEGIPTLIR
WKGVERLDGDQLLKSSLLELFFEETDPKKSNFVAQ*

BS13440.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-PB 135 CG3939-PB 1..135 1..135 725 100 Plus
CG3939-PA 135 CG3939-PA 1..135 1..135 725 100 Plus
cl-PC 126 CG11024-PC 8..126 8..126 224 39.2 Plus
cl-PB 126 CG11024-PB 8..126 8..126 224 39.2 Plus
cl-PA 126 CG11024-PA 8..126 8..126 224 39.2 Plus