Clone Sequence Records
BS13440.5prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS13440.5prime
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAATAAAAGCTTTCTAGACC
BS13440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-PA | 408 | CG3939-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 747 | CG3939-RB | 313..722 | 17..426 | 2050 | 100 | Plus |
CG3939-RA | 931 | CG3939-RA | 497..906 | 17..426 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3175933..3176198 | 161..426 | 1330 | 100 | Plus |
X | 23542271 | X | 3175514..3175658 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:45:57 has no hits.
BS13440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:50 Download gff for
BS13440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-PA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:36 Download gff for
BS13440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..906 | 17..426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:11 Download gff for
BS13440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..906 | 17..426 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:11 Download gff for
BS13440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3175514..3175658 | 17..161 | 100 | -> | Plus |
X | 3175934..3176198 | 162..426 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:36 Download gff for
BS13440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3069547..3069691 | 17..161 | 100 | -> | Plus |
arm_X | 3069967..3070231 | 162..426 | 100 | | Plus |
BS13440.3prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS13440.3prime
ATGGTCTAGAAAGCTTTTATTGGGCGACAAAATTGGACTTCTTCGGATCG
GTCTCCTCGAAAAAGAGCTCCAGAAGACTCGACTTGAGCAGCTGATCCCC
ATCCAGGCGCTCCACGCCCTTCCAGCGTATAAGGGTCGGTATGCCTTCCA
CCGAGTATGGCGGCTTTCGGAACATGTTGTCCTTGCCTATCCAGGATTCC
CGGCTACCCACGTCCACCACCAGGATCATGCAATCCGCCGGCGCGTGGTT
GCGAAAGGCACTCATGATAGTTTCCTCGGCCGCCACGCAGTCCGGACACC
AGCTGCGTCCGTCCTTGTCTTTCTCGCCGTAGAAGTAGATGTAGATGGGG
CTGCGCTGGTTCTCGTACAGCTTGATCAGATTTTCCATCTCCTTGAAGCC
CCGTGCCGGCACATATTCGGGCATGTCGACTGATAACT
BS13440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-PA | 408 | CG3939-RA | 1..408 | 424..17 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 747 | CG3939-RB | 313..722 | 424..15 | 2050 | 100 | Minus |
CG3939-RA | 931 | CG3939-RA | 497..906 | 424..15 | 2050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3175933..3176198 | 280..15 | 1330 | 100 | Minus |
X | 23542271 | X | 3175514..3175658 | 424..280 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:14:07 has no hits.
BS13440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:50 Download gff for
BS13440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-PA | 1..408 | 17..424 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:49 Download gff for
BS13440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..906 | 15..424 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:40 Download gff for
BS13440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..906 | 15..424 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:40 Download gff for
BS13440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3175514..3175658 | 280..424 | 100 | -> | Minus |
X | 3175934..3176198 | 15..279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:49 Download gff for
BS13440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3069547..3069691 | 280..424 | 100 | -> | Minus |
arm_X | 3069967..3070231 | 15..279 | 100 | | Minus |
BS13440.complete Sequence
440 bp assembled on 2006-11-01
GenBank Submission: FJ637452
> BS13440.complete
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAATAAAAGCTTTCTAGACCAT
BS13440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 408 | CG3939-PB | 1..408 | 17..424 | 2040 | 100 | Plus |
CG3939-RA | 408 | CG3939-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 747 | CG3939-RB | 313..722 | 17..426 | 2050 | 100 | Plus |
CG3939-RA | 931 | CG3939-RA | 497..906 | 17..426 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3175933..3176198 | 161..426 | 1330 | 100 | Plus |
X | 23542271 | X | 3175514..3175658 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:23:38 has no hits.
BS13440.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:18 Download gff for
BS13440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:56 Download gff for
BS13440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 396..805 | 17..426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:53 Download gff for
BS13440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..902 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:18 Download gff for
BS13440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 396..805 | 17..426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:00 Download gff for
BS13440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..902 | 17..422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:00 Download gff for
BS13440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3175514..3175658 | 17..161 | 100 | -> | Plus |
X | 3175934..3176194 | 162..422 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:53 Download gff for
BS13440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3069547..3069691 | 17..161 | 100 | -> | Plus |
arm_X | 3069967..3070227 | 162..422 | 100 | | Plus |
BS13440.pep Sequence
Translation from 16 to 423
> BS13440.pep
MPEYVPARGFKEMENLIKLYENQRSPIYIYFYGEKDKDGRSWCPDCVAAE
ETIMSAFRNHAPADCMILVVDVGSRESWIGKDNMFRKPPYSVEGIPTLIR
WKGVERLDGDQLLKSSLLELFFEETDPKKSNFVAQ*
BS13440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-PB | 135 | CG3939-PB | 1..135 | 1..135 | 725 | 100 | Plus |
CG3939-PA | 135 | CG3939-PA | 1..135 | 1..135 | 725 | 100 | Plus |
cl-PC | 126 | CG11024-PC | 8..126 | 8..126 | 224 | 39.2 | Plus |
cl-PB | 126 | CG11024-PB | 8..126 | 8..126 | 224 | 39.2 | Plus |
cl-PA | 126 | CG11024-PA | 8..126 | 8..126 | 224 | 39.2 | Plus |