Clone BS13444 Report

Search the DGRC for BS13444

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptRpS30-RA
Protein status:BS13444.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13444.3prime Sequence

429 bp (429 high quality bases) assembled on 2006-10-13

> BS13444.3prime
ATGGTCTAGAAAGCTTCTATGTGGAGTTGGCGTTGGGGCCGCGACGACGG
CCGAAGCCCTGCACAAAGTTGACGAACCGGCGGTTGTACTGGATCCTGCG
CTTGGCGCGTCCGGTCTTCTTCTTCTTCTTCTCCTGCTTCTCCACCTTGG
GCGTCTGTCCCTTGACCTTGCCGGCACGGGCCAGAGAACCGTGCACCTTA
CCTCCCAGCATGGGAATGTTGAGGTCCAGCTCAAAGGAGCTCAGGGCGGT
CACGGGAGTCTCGTTGGCCAGAGTGATGCCCTCGCAATCGAGGCTGAATT
CCTCGGCGTTGAATCCATGGATCTGGGCCAGTTGGTTCTTGACTCCGGCA
ATGGTGGCATCCTGGGAAACCTCCAGGGCCTCGATGGTCTCTAGTCCACG
GACGAACAGCTGCATGTCGACTGATAACT

BS13444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15697-PA 399 RpS30-RA 1..399 415..17 1995 100 Minus
CG15697-PB 399 RpS30-RB 1..399 415..17 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 598 CG15697-RC 123..525 416..14 2015 100 Minus
RpS30-RB 507 CG15697-RB 32..434 416..14 2015 100 Minus
RpS30-RA 517 CG15697-RA 42..444 416..14 2015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851029..20851354 339..14 1630 100 Minus
3R 32079331 3R 20850865..20850943 416..338 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:48:36 has no hits.

BS13444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:51 Download gff for BS13444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15697-PB 1..399 17..415 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:04 Download gff for BS13444.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 43..459 5..425 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:01 Download gff for BS13444.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 37..453 5..425 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:01 Download gff for BS13444.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20850860..20850943 338..425 95 -> Minus
3R 20851031..20851363 5..337 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:04 Download gff for BS13444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16676582..16676665 338..425 95 -> Minus
arm_3R 16676753..16677085 5..337 98   Minus

BS13444.5prime Sequence

429 bp (429 high quality bases) assembled on 2006-10-13

> BS13444.5prime
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACATAGAAGCTTTCTAGACC

BS13444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15697-PA 399 RpS30-RA 1..399 17..415 1995 100 Plus
CG15697-PB 399 RpS30-RB 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 598 CG15697-RC 123..525 16..418 2015 100 Plus
RpS30-RB 507 CG15697-RB 32..434 16..418 2015 100 Plus
RpS30-RA 517 CG15697-RA 42..444 16..418 2015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851029..20851354 93..418 1630 100 Plus
3R 32079331 3R 20850865..20850943 16..94 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:52:38 has no hits.

BS13444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:52 Download gff for BS13444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15697-PB 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:31 Download gff for BS13444.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 43..459 7..427 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:38 Download gff for BS13444.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 37..453 7..427 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:38 Download gff for BS13444.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20851031..20851363 95..427 98   Plus
3R 20850860..20850943 7..94 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:31 Download gff for BS13444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16676582..16676665 7..94 95 -> Plus
arm_3R 16676753..16677085 95..427 98   Plus

BS13444.complete Sequence

431 bp assembled on 2006-11-01

GenBank Submission: FJ637453

> BS13444.complete
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACATAGAAGCTTTCTAGACCAT

BS13444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 399 CG15697-PC 1..399 17..415 1995 100 Plus
RpS30-RB 399 CG15697-PB 1..399 17..415 1995 100 Plus
RpS30-RA 399 CG15697-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 598 CG15697-RC 123..525 16..418 2015 100 Plus
RpS30-RB 507 CG15697-RB 32..434 16..418 2015 100 Plus
RpS30-RA 517 CG15697-RA 42..444 16..418 2015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851029..20851354 93..418 1630 100 Plus
3R 32079331 3R 20850865..20850943 16..94 395 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:58:59 has no hits.

BS13444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:47 Download gff for BS13444.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RB 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:58 Download gff for BS13444.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 85..501 7..427 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:47 Download gff for BS13444.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 49..447 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:47 Download gff for BS13444.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 85..501 7..427 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:19 Download gff for BS13444.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 43..441 17..415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:19 Download gff for BS13444.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20850866..20850943 17..94 100 -> Plus
3R 20851031..20851351 95..415 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:47 Download gff for BS13444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16676588..16676665 17..94 100 -> Plus
arm_3R 16676753..16677073 95..415 100   Plus

BS13444.pep Sequence

Translation from 16 to 414

> BS13444.pep
MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLA
NETPVTALSSFELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKK
TGRAKRRIQYNRRFVNFVQGFGRRRGPNANST*

BS13444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-PC 132 CG15697-PC 1..132 1..132 668 100 Plus
RpS30-PB 132 CG15697-PB 1..132 1..132 668 100 Plus
RpS30-PA 132 CG15697-PA 1..132 1..132 668 100 Plus