Clone Sequence Records
BS13444.3prime Sequence
429 bp (429 high quality bases) assembled on 2006-10-13
> BS13444.3prime
ATGGTCTAGAAAGCTTCTATGTGGAGTTGGCGTTGGGGCCGCGACGACGG
CCGAAGCCCTGCACAAAGTTGACGAACCGGCGGTTGTACTGGATCCTGCG
CTTGGCGCGTCCGGTCTTCTTCTTCTTCTTCTCCTGCTTCTCCACCTTGG
GCGTCTGTCCCTTGACCTTGCCGGCACGGGCCAGAGAACCGTGCACCTTA
CCTCCCAGCATGGGAATGTTGAGGTCCAGCTCAAAGGAGCTCAGGGCGGT
CACGGGAGTCTCGTTGGCCAGAGTGATGCCCTCGCAATCGAGGCTGAATT
CCTCGGCGTTGAATCCATGGATCTGGGCCAGTTGGTTCTTGACTCCGGCA
ATGGTGGCATCCTGGGAAACCTCCAGGGCCTCGATGGTCTCTAGTCCACG
GACGAACAGCTGCATGTCGACTGATAACT
BS13444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15697-PA | 399 | RpS30-RA | 1..399 | 415..17 | 1995 | 100 | Minus |
CG15697-PB | 399 | RpS30-RB | 1..399 | 415..17 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 598 | CG15697-RC | 123..525 | 416..14 | 2015 | 100 | Minus |
RpS30-RB | 507 | CG15697-RB | 32..434 | 416..14 | 2015 | 100 | Minus |
RpS30-RA | 517 | CG15697-RA | 42..444 | 416..14 | 2015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851029..20851354 | 339..14 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 20850865..20850943 | 416..338 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:48:36 has no hits.
BS13444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:51 Download gff for
BS13444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15697-PB | 1..399 | 17..415 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:04 Download gff for
BS13444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 43..459 | 5..425 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:01 Download gff for
BS13444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 37..453 | 5..425 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:01 Download gff for
BS13444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20850860..20850943 | 338..425 | 95 | -> | Minus |
3R | 20851031..20851363 | 5..337 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:04 Download gff for
BS13444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16676582..16676665 | 338..425 | 95 | -> | Minus |
arm_3R | 16676753..16677085 | 5..337 | 98 | | Minus |
BS13444.5prime Sequence
429 bp (429 high quality bases) assembled on 2006-10-13
> BS13444.5prime
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACATAGAAGCTTTCTAGACC
BS13444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15697-PA | 399 | RpS30-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
CG15697-PB | 399 | RpS30-RB | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 598 | CG15697-RC | 123..525 | 16..418 | 2015 | 100 | Plus |
RpS30-RB | 507 | CG15697-RB | 32..434 | 16..418 | 2015 | 100 | Plus |
RpS30-RA | 517 | CG15697-RA | 42..444 | 16..418 | 2015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851029..20851354 | 93..418 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 20850865..20850943 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:52:38 has no hits.
BS13444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:52 Download gff for
BS13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15697-PB | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:31 Download gff for
BS13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 43..459 | 7..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:38 Download gff for
BS13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 37..453 | 7..427 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:38 Download gff for
BS13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20851031..20851363 | 95..427 | 98 | | Plus |
3R | 20850860..20850943 | 7..94 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:31 Download gff for
BS13444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16676582..16676665 | 7..94 | 95 | -> | Plus |
arm_3R | 16676753..16677085 | 95..427 | 98 | | Plus |
BS13444.complete Sequence
431 bp assembled on 2006-11-01
GenBank Submission: FJ637453
> BS13444.complete
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACATAGAAGCTTTCTAGACCAT
BS13444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 399 | CG15697-PC | 1..399 | 17..415 | 1995 | 100 | Plus |
RpS30-RB | 399 | CG15697-PB | 1..399 | 17..415 | 1995 | 100 | Plus |
RpS30-RA | 399 | CG15697-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 598 | CG15697-RC | 123..525 | 16..418 | 2015 | 100 | Plus |
RpS30-RB | 507 | CG15697-RB | 32..434 | 16..418 | 2015 | 100 | Plus |
RpS30-RA | 517 | CG15697-RA | 42..444 | 16..418 | 2015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851029..20851354 | 93..418 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 20850865..20850943 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:58:59 has no hits.
BS13444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:47 Download gff for
BS13444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RB | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:58 Download gff for
BS13444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 85..501 | 7..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:47 Download gff for
BS13444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 49..447 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:47 Download gff for
BS13444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 85..501 | 7..427 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:19 Download gff for
BS13444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 43..441 | 17..415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:19 Download gff for
BS13444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20850866..20850943 | 17..94 | 100 | -> | Plus |
3R | 20851031..20851351 | 95..415 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:47 Download gff for
BS13444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16676588..16676665 | 17..94 | 100 | -> | Plus |
arm_3R | 16676753..16677073 | 95..415 | 100 | | Plus |
BS13444.pep Sequence
Translation from 16 to 414
> BS13444.pep
MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLA
NETPVTALSSFELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKK
TGRAKRRIQYNRRFVNFVQGFGRRRGPNANST*
BS13444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-PC | 132 | CG15697-PC | 1..132 | 1..132 | 668 | 100 | Plus |
RpS30-PB | 132 | CG15697-PB | 1..132 | 1..132 | 668 | 100 | Plus |
RpS30-PA | 132 | CG15697-PA | 1..132 | 1..132 | 668 | 100 | Plus |