Clone Sequence Records
BS13445.5prime Sequence
681 bp (595 high quality bases) assembled on 2006-10-13
> BS13445.5prime
GAAGTTATCAGTCGACATGTTAAGCATTCGTGTTTTAAGGCTACAAAATG
GACACTCCGTTCTTAACAACGCCTGCCAATTGGCACTTTCGCGAAACAAG
AGCTCCAAAAGGTCGAGCAAAGACAACGTAACGCGACAGGGAAAAATATT
TGGCTCGTTGTTTGGAAATCGGCTTAAAGGCAGCAAAAGCCATTGGTATC
CATCGCCCGATGCAGGAACATCAGGCAATCAAAAGTCGCTGCACGCCTTA
AAGTTTGGAACCCCACACTCGAAGACAACTTGCAGCCACAACAATCGACG
CATGTCTGTTCTGAACAAGTTGTTCATGACGAACATCACTGATATTCTGG
CCACCGGCGCAGTTGCCGATTCCATCGTGGGACACGGAGTGCAGATTTCC
TATGTCAAGATCACCAGCGACTTCTCCCGCATCAATGTCTATTGGATGGG
CAAGGATGGCGGGGAGAACCAAGAGCTCGAGAACACATTGAATCGCATGA
GCGGCAAACTGCAGCACGAGCTATCGCAGCTCCATCTGATGGGCGAAGTG
CCAAAGATCAAGTTTGTCCGGGACAAAACGAGCACTGGTCTCCATCAGGT
CCACGAGGTTCTGTCCAAAATCGATCTTCAGCACAGTTACTCTAGTTCAA
ATGCGGAAGTTGAAAAAAGCGACGCACAGAG
BS13445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15916-PA | 816 | CG15916-RA | 1..665 | 17..681 | 3300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15916-RA | 959 | CG15916-RA | 84..748 | 17..681 | 3310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15890672..15891336 | 17..681 | 3310 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:51:02 has no hits.
BS13445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:52 Download gff for
BS13445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15916-PA | 1..665 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:44 Download gff for
BS13445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15916-RA | 77..748 | 10..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:24 Download gff for
BS13445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15916-RA | 77..748 | 10..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:24 Download gff for
BS13445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15890665..15891336 | 10..681 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:44 Download gff for
BS13445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15784698..15785369 | 10..681 | 99 | | Plus |
BS13445.complete Sequence
848 bp assembled on 2010-07-02
GenBank Submission: KX803215
> BS13445.complete
GAAGTTATCAGTCGACATGTTAAGCATTCGTGTTTTAAGGCTACAAAATG
GACACTCCGTTCTTAACAACGCCTGCCAATTGGCACTTTCGCGAAACAAG
AGCTCCAAAAGGTCGAGCAAAGACAACGTAACGCGACAGGGAAAAATATT
TGGCTCGTTGTTTGGAAATCGGCTTAAAGGCAGCAAAAGCCATTGGTATC
CATCGCCCGATGCAGGAACATCAGGCAATCAAAAGTCGCTGCACGCCTTA
AAGTTTGGAACCCCACACTCGAAGACAACTTGCAGCCACAACAATCGACG
CATGTCTGTTCTGAACAAGTTGTTCATGACGAACATCACTGATATTCTGG
CCACCGGCGCAGTTGCCGATTCCATCGTGGGACACGGAGTGCAGATTTCC
TATGTCAAGATCACCAGCGACTTCTCCCGCATCAATGTCTATTGGATGGG
CAAGGATGGCGGGGAGAACCAAGAGCTCGAGAACACATTGAATCGCATGA
GCGGCAAACTGCAGCACGAGCTATCGCAGCTCCATCTGATGGGCGAAGTG
CCAAAGATCAAGTTTGTCCGGGACAAAACGAGCACTGGTCTCCATCAGGT
CCACGAGGTTCTGTCCAAAATCGATCTTCAGCACAGTTACTCTAGTTCAA
ATGCGGAAGTTGAAGAAAGCGACGCACAGAGTTGTCAGACGGCTGCGGAT
GAGGAATGGCCGGAGATGCGACAGGATTTCCTCAGTTTTAACCATAGCTT
AGTTATGGACAAGATTCTCGGCAAGATGCGCAAGTCCAAAGATGCCTGGG
TTAATCATAGACAAAATATTGCGAAAACCTAAAAGCTTTCTAGACCAT
BS13445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15916-RA | 816 | CG15916-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15916-RA | 959 | CG15916-RA | 84..899 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15890672..15891487 | 17..832 | 4080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:19:10 has no hits.
BS13445.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:37 Download gff for
BS13445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15916-RA | 79..887 | 22..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:30 Download gff for
BS13445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15916-RA | 89..897 | 22..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:39 Download gff for
BS13445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15916-RA | 89..897 | 22..830 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:39 Download gff for
BS13445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15890677..15891485 | 22..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:30 Download gff for
BS13445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15784710..15785518 | 22..830 | 100 | | Plus |
BS13445.pep Sequence
Translation from 16 to 831
> BS13445.pep
MLSIRVLRLQNGHSVLNNACQLALSRNKSSKRSSKDNVTRQGKIFGSLFG
NRLKGSKSHWYPSPDAGTSGNQKSLHALKFGTPHSKTTCSHNNRRMSVLN
KLFMTNITDILATGAVADSIVGHGVQISYVKITSDFSRINVYWMGKDGGE
NQELENTLNRMSGKLQHELSQLHLMGEVPKIKFVRDKTSTGLHQVHEVLS
KIDLQHSYSSSNAEVEESDAQSCQTAADEEWPEMRQDFLSFNHSLVMDKI
LGKMRKSKDAWVNHRQNIAKT*
BS13445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15916-PA | 271 | CG15916-PA | 1..271 | 1..271 | 1407 | 100 | Plus |