Clone BS13445 Report

Search the DGRC for BS13445

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG15916-RA
Protein status:BS13445.pep: full length peptide match
Sequenced Size:848

Clone Sequence Records

BS13445.5prime Sequence

681 bp (595 high quality bases) assembled on 2006-10-13

> BS13445.5prime
GAAGTTATCAGTCGACATGTTAAGCATTCGTGTTTTAAGGCTACAAAATG
GACACTCCGTTCTTAACAACGCCTGCCAATTGGCACTTTCGCGAAACAAG
AGCTCCAAAAGGTCGAGCAAAGACAACGTAACGCGACAGGGAAAAATATT
TGGCTCGTTGTTTGGAAATCGGCTTAAAGGCAGCAAAAGCCATTGGTATC
CATCGCCCGATGCAGGAACATCAGGCAATCAAAAGTCGCTGCACGCCTTA
AAGTTTGGAACCCCACACTCGAAGACAACTTGCAGCCACAACAATCGACG
CATGTCTGTTCTGAACAAGTTGTTCATGACGAACATCACTGATATTCTGG
CCACCGGCGCAGTTGCCGATTCCATCGTGGGACACGGAGTGCAGATTTCC
TATGTCAAGATCACCAGCGACTTCTCCCGCATCAATGTCTATTGGATGGG
CAAGGATGGCGGGGAGAACCAAGAGCTCGAGAACACATTGAATCGCATGA
GCGGCAAACTGCAGCACGAGCTATCGCAGCTCCATCTGATGGGCGAAGTG
CCAAAGATCAAGTTTGTCCGGGACAAAACGAGCACTGGTCTCCATCAGGT
CCACGAGGTTCTGTCCAAAATCGATCTTCAGCACAGTTACTCTAGTTCAA
ATGCGGAAGTTGAAAAAAGCGACGCACAGAG

BS13445.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-PA 816 CG15916-RA 1..665 17..681 3300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-RA 959 CG15916-RA 84..748 17..681 3310 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15890672..15891336 17..681 3310 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 12:51:02 has no hits.

BS13445.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:52 Download gff for BS13445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15916-PA 1..665 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:44 Download gff for BS13445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 77..748 10..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:24 Download gff for BS13445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 77..748 10..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:24 Download gff for BS13445.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15890665..15891336 10..681 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:44 Download gff for BS13445.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15784698..15785369 10..681 99   Plus

BS13445.complete Sequence

848 bp assembled on 2010-07-02

GenBank Submission: KX803215

> BS13445.complete
GAAGTTATCAGTCGACATGTTAAGCATTCGTGTTTTAAGGCTACAAAATG
GACACTCCGTTCTTAACAACGCCTGCCAATTGGCACTTTCGCGAAACAAG
AGCTCCAAAAGGTCGAGCAAAGACAACGTAACGCGACAGGGAAAAATATT
TGGCTCGTTGTTTGGAAATCGGCTTAAAGGCAGCAAAAGCCATTGGTATC
CATCGCCCGATGCAGGAACATCAGGCAATCAAAAGTCGCTGCACGCCTTA
AAGTTTGGAACCCCACACTCGAAGACAACTTGCAGCCACAACAATCGACG
CATGTCTGTTCTGAACAAGTTGTTCATGACGAACATCACTGATATTCTGG
CCACCGGCGCAGTTGCCGATTCCATCGTGGGACACGGAGTGCAGATTTCC
TATGTCAAGATCACCAGCGACTTCTCCCGCATCAATGTCTATTGGATGGG
CAAGGATGGCGGGGAGAACCAAGAGCTCGAGAACACATTGAATCGCATGA
GCGGCAAACTGCAGCACGAGCTATCGCAGCTCCATCTGATGGGCGAAGTG
CCAAAGATCAAGTTTGTCCGGGACAAAACGAGCACTGGTCTCCATCAGGT
CCACGAGGTTCTGTCCAAAATCGATCTTCAGCACAGTTACTCTAGTTCAA
ATGCGGAAGTTGAAGAAAGCGACGCACAGAGTTGTCAGACGGCTGCGGAT
GAGGAATGGCCGGAGATGCGACAGGATTTCCTCAGTTTTAACCATAGCTT
AGTTATGGACAAGATTCTCGGCAAGATGCGCAAGTCCAAAGATGCCTGGG
TTAATCATAGACAAAATATTGCGAAAACCTAAAAGCTTTCTAGACCAT

BS13445.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-RA 816 CG15916-PA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-RA 959 CG15916-RA 84..899 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15890672..15891487 17..832 4080 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:19:10 has no hits.

BS13445.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:37 Download gff for BS13445.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 79..887 22..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:30 Download gff for BS13445.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 89..897 22..830 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:39 Download gff for BS13445.complete
Subject Subject Range Query Range Percent Splice Strand
CG15916-RA 89..897 22..830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:39 Download gff for BS13445.complete
Subject Subject Range Query Range Percent Splice Strand
X 15890677..15891485 22..830 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:30 Download gff for BS13445.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15784710..15785518 22..830 100   Plus

BS13445.pep Sequence

Translation from 16 to 831

> BS13445.pep
MLSIRVLRLQNGHSVLNNACQLALSRNKSSKRSSKDNVTRQGKIFGSLFG
NRLKGSKSHWYPSPDAGTSGNQKSLHALKFGTPHSKTTCSHNNRRMSVLN
KLFMTNITDILATGAVADSIVGHGVQISYVKITSDFSRINVYWMGKDGGE
NQELENTLNRMSGKLQHELSQLHLMGEVPKIKFVRDKTSTGLHQVHEVLS
KIDLQHSYSSSNAEVEESDAQSCQTAADEEWPEMRQDFLSFNHSLVMDKI
LGKMRKSKDAWVNHRQNIAKT*

BS13445.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15916-PA 271 CG15916-PA 1..271 1..271 1407 100 Plus